Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | oligospermia | | ISO | PIWIL4 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:20940137 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | oligospermia | | ISO | PIWIL4 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:20940137 | |
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# | Reference Title | Reference Citation |
1. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12414724 | PMID:12466851 | PMID:16141072 | PMID:16141073 | PMID:16787967 | PMID:17395546 | PMID:18381894 | PMID:18922463 |
PMID:19584108 | PMID:20011505 | PMID:20059948 | PMID:20439430 | PMID:20534472 | PMID:20547853 | PMID:21267068 | PMID:21383078 | PMID:21397847 | PMID:21566194 | PMID:21687940 | PMID:21873635 |
PMID:22008794 | PMID:22020280 | PMID:22902560 | PMID:23714778 | PMID:24058407 | PMID:24067652 | PMID:24183939 | PMID:24376547 | PMID:24464225 | PMID:24939875 | PMID:25238487 | PMID:25416063 |
PMID:25503965 | PMID:25762440 | PMID:25772451 | PMID:26109049 | PMID:26279574 | PMID:26669262 | PMID:27072294 | PMID:27626653 | PMID:27655786 | PMID:28115634 | PMID:28461596 | PMID:28530707 |
PMID:28633017 | PMID:28920925 | PMID:29437694 | PMID:29941866 | PMID:30108053 | PMID:30304676 | PMID:30805989 | PMID:30951587 | PMID:32325033 | PMID:32381626 | PMID:32674113 | PMID:32719317 |
PMID:34650118 | PMID:34912016 | PMID:36473462 | PMID:36934857 |
Piwil4 (Mus musculus - house mouse) |
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PIWIL4 (Homo sapiens - human) |
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Piwil4 (Rattus norvegicus - Norway rat) |
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Piwil4 (Chinchilla lanigera - long-tailed chinchilla) |
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PIWIL4 (Pan paniscus - bonobo/pygmy chimpanzee) |
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PIWIL4 (Canis lupus familiaris - dog) |
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Piwil4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PIWIL4 (Sus scrofa - pig) |
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PIWIL4 (Chlorocebus sabaeus - green monkey) |
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Piwil4 (Heterocephalus glaber - naked mole-rat) |
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Variants in Piwil4
1407 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RefSeq Transcripts | NM_001368831 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001368832 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001368836 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006510433 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036155070 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036155071 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AB258534 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK033746 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK143022 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY135692 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466522 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CT030247 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000076946 ⟹ ENSMUSP00000076213 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000115643 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000115644 ⟹ ENSMUSP00000111308 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000136399 ⟹ ENSMUSP00000120851 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001368831 ⟹ NP_001355760 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001368832 ⟹ NP_001355761 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001368836 ⟹ NP_001355765 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006510433 ⟹ XP_006510496 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036155070 ⟹ XP_036010963 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036155071 ⟹ XP_036010964 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001355760 | (Get FASTA) | NCBI Sequence Viewer |
NP_001355761 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001355765 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006510496 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036010963 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036010964 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAN75583 | (Get FASTA) | NCBI Sequence Viewer |
BAC28462 | (Get FASTA) | NCBI Sequence Viewer | |
BAF65667 | (Get FASTA) | NCBI Sequence Viewer | |
EDL24999 | (Get FASTA) | NCBI Sequence Viewer | |
EDL25000 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000076213.4 | ||
ENSMUSP00000111308 | |||
ENSMUSP00000111308.4 | |||
ENSMUSP00000120851.2 | |||
GenBank Protein | Q8CGT6 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | XP_006510496 ⟸ XM_006510433 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | NP_001355761 ⟸ NM_001368832 |
- Peptide Label: | isoform 2 |
- UniProtKB: | A0A6Q6QBZ6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001355760 ⟸ NM_001368831 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q8CGT6 (UniProtKB/Swiss-Prot), A6X964 (UniProtKB/Swiss-Prot), A6X963 (UniProtKB/Swiss-Prot), A6P4B9 (UniProtKB/Swiss-Prot), Q8CC75 (UniProtKB/Swiss-Prot), A0A6Q6QBZ6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001355765 ⟸ NM_001368836 |
- Peptide Label: | isoform 3 |
RefSeq Acc Id: | ENSMUSP00000076213 ⟸ ENSMUST00000076946 |
RefSeq Acc Id: | ENSMUSP00000111308 ⟸ ENSMUST00000115644 |
RefSeq Acc Id: | ENSMUSP00000120851 ⟸ ENSMUST00000136399 |
RefSeq Acc Id: | XP_036010964 ⟸ XM_036155071 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_036010963 ⟸ XM_036155070 |
- Peptide Label: | isoform X2 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q8CGT6-F1-model_v2 | AlphaFold | Q8CGT6 | 1-848 | view protein structure |
RGD ID: | 6844955 | ||||||||
Promoter ID: | MM_KWN:56396 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_2Hour, Lung | ||||||||
Transcripts: | ENSMUST00000115643 | ||||||||
Position: |
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RGD ID: | 8668814 | ||||||||
Promoter ID: | EPDNEW_M12438 | ||||||||
Type: | single initiation site | ||||||||
Name: | Piwil4_1 | ||||||||
Description: | Mus musculus piwi-like RNA-mediated gene silencing 4 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M12439 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 8668816 | ||||||||
Promoter ID: | EPDNEW_M12439 | ||||||||
Type: | initiation region | ||||||||
Name: | Piwil4_2 | ||||||||
Description: | Mus musculus piwi-like RNA-mediated gene silencing 4 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M12438 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:3041167 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000036912 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000076946.4 | UniProtKB/TrEMBL |
ENSMUST00000115643 | ENTREZGENE | |
ENSMUST00000115644 | ENTREZGENE | |
ENSMUST00000115644.10 | UniProtKB/TrEMBL | |
ENSMUST00000136399.8 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.30.420.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.40.50.2300 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
paz domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | PAZ_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PAZ_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Piwi | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNaseH-like_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNaseH_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
MGD | MGI:3041167 | ENTREZGENE |
NCBI Gene | 330890 | ENTREZGENE |
PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PIWI-LIKE PROTEIN 4 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | PAZ | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Piwi | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Piwil4 | PhenoGen |
PROSITE | PAZ | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PIWI | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | PAZ | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Piwi | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF101690 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF53098 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | A0A0R4J0Y7_MOUSE | UniProtKB/TrEMBL |
A0A6Q6QBZ6 | ENTREZGENE, UniProtKB/TrEMBL | |
A6P4B9 | ENTREZGENE | |
A6X963 | ENTREZGENE | |
A6X964 | ENTREZGENE | |
F6VRE5_MOUSE | UniProtKB/TrEMBL | |
PIWL4_MOUSE | UniProtKB/Swiss-Prot | |
Q8CC75 | ENTREZGENE | |
Q8CGT6 | ENTREZGENE | |
UniProt Secondary | A6P4B9 | UniProtKB/Swiss-Prot |
A6X963 | UniProtKB/Swiss-Prot | |
A6X964 | UniProtKB/Swiss-Prot | |
Q8CC75 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2013-02-27 | Piwil4 | piwi-like RNA-mediated gene silencing 4 | piwi-like homolog 4 (Drosophila) | Symbol and/or name change | 5135510 | APPROVED |