Rps12-ps11 (ribosomal protein S12, pseudogene 11) - Rat Genome Database

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Gene: Rps12-ps11 (ribosomal protein S12, pseudogene 11) Mus musculus
Analyze
Symbol: Rps12-ps11
Name: ribosomal protein S12, pseudogene 11
RGD ID: 1618711
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S12-like; EG434843; Gm5642; predicted gene, EG434843; predicted pseudogene 5642
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X123,379,643 - 123,380,104 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX123,379,656 - 123,380,054 (-)EnsemblGRCm39 Ensembl
GRCm38X124,469,946 - 124,470,383 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX124,469,959 - 124,470,357 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X121,583,568 - 121,583,966 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X120,586,855 - 120,587,388 (-)NCBIMGSCv36mm8
Cytogenetic MapXE3NCBI
cM MapX49.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSMUST00000178427
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036162169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX005206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000178427
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX123,379,656 - 123,380,054 (-)Ensembl
GRCm38.p6 EnsemblX124,469,959 - 124,470,357 (-)Ensembl
RefSeq Acc Id: XM_036162169   ⟹   XP_036018062
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X123,379,643 - 123,380,104 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036018062 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_036018062   ⟸   XM_036162169
- UniProtKB: F7AEH4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094238 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000178427 ENTREZGENE
MGD MGI:3646126 ENTREZGENE
NCBI Gene 434843 ENTREZGENE
PhenoGen Rps12-ps11 PhenoGen
UniProt F7AEH4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-30 Rps12-ps11  ribosomal protein S12, pseudogene 11  Gm5642  predicted pseudogene 5642  Symbol and/or name change 5135510 APPROVED
2011-07-27 Gm5642  predicted pseudogene 5642  Gm5642  predicted gene 5642  Symbol and/or name change 5135510 APPROVED