Eif3s6-ps1 (eukaryotic translation initiation factor 3, subunit 6, pseudogene 1) - Rat Genome Database

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Gene: Eif3s6-ps1 (eukaryotic translation initiation factor 3, subunit 6, pseudogene 1) Mus musculus
Analyze
Symbol: Eif3s6-ps1
Name: eukaryotic translation initiation factor 3, subunit 6, pseudogene 1
RGD ID: 1618419
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Gm11994; Int6; Int6-ps1; predicted gene 11994
Related Functional Gene: Eif3e  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39119,687,011 - 9,687,611 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl119,687,152 - 9,687,621 (-)EnsemblGRCm39 Ensembl
GRCm38119,737,011 - 9,737,611 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl119,737,152 - 9,737,621 (-)EnsemblGRCm38mm10GRCm38
MGSCv37119,636,907 - 9,637,714 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36119,636,995 - 9,702,590 (-)NCBIMGSCv36mm8
Celera1110,167,505 - 10,168,314 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map116.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:7558022   PMID:10501973  


Genomics

Variants

.
Variants in Eif3s6-ps1
21 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSMUST00000117907
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226794Feml9_mfemur length 9, 5 week (mouse)11705000016750000Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse

Markers in Region
D11Mit259  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38119,736,728 - 9,736,842UniSTSGRCm38
MGSCv37119,636,731 - 9,636,845UniSTSGRCm37
Celera1110,167,329 - 10,167,443UniSTS
Cytogenetic Map11A1UniSTS
cM Map115.0UniSTS
Whitehead Genetic115.5UniSTS
Whitehead/MRC_RH11258.11UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000117907
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl119,687,152 - 9,687,621 (-)Ensembl
GRCm38.p6 Ensembl119,737,152 - 9,737,621 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081629 Ensembl
MGD MGI:103203 ENTREZGENE
NCBI Gene 16342 ENTREZGENE
PhenoGen Eif3s6-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Eif3s6-ps1  eukaryotic translation initiation factor 3, subunit 6, pseudogene 1  Gm11994  predicted gene 11994  Data merged from RGD:2295468 737654 PROVISIONAL