Acsm3 (acyl-CoA synthetase medium-chain family member 3) - Rat Genome Database

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Gene: Acsm3 (acyl-CoA synthetase medium-chain family member 3) Mus musculus
Analyze
Symbol: Acsm3
Name: acyl-CoA synthetase medium-chain family member 3
RGD ID: 1618411
MGI Page MGI
Description: Enables butyrate-CoA ligase activity; fatty acid ligase activity; and propionate CoA-transferase activity. Acts upstream of or within fatty acid biosynthetic process. Located in mitochondrial matrix. Is expressed in alimentary system; integumental system; and lower urinary tract. Human ortholog(s) of this gene implicated in IgA glomerulonephritis. Orthologous to human ACSM3 (acyl-CoA synthetase medium chain family member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: acyl-coenzyme A synthetase ACSM3, mitochondrial; butyrate--CoA ligase 3; butyryl coenzyme A synthetase 3; butyryl-coenzyme A synthetase 3; middle-chain acyl-CoA synthetase 3; propionate--CoA ligase; protein SA homolog; S; Sa; SA hypertension-associated homolog; Sah
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397119,360,106 - 119,384,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7119,360,146 - 119,386,736 (+)EnsemblGRCm39 Ensembl
GRCm387119,760,883 - 119,784,896 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7119,760,923 - 119,787,513 (+)EnsemblGRCm38mm10GRCm38
MGSCv377126,904,437 - 126,928,410 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367119,552,072 - 119,576,045 (+)NCBIMGSCv36mm8
Celera7119,680,775 - 119,704,303 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map764.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-chloropropane-1,2-diol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
bexarotene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorohydrocarbon  (ISO)
chromium(6+)  (EXP)
ciglitazone  (ISO)
cisplatin  (EXP,ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
dextran sulfate  (EXP)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dieldrin  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
folic acid  (EXP)
fructose  (EXP)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucose  (EXP)
glycidol  (EXP)
Heliotrine  (ISO)
hydrogen peroxide  (ISO)
Indeno[1,2,3-cd]pyrene  (EXP)
indole-3-methanol  (ISO)
indometacin  (ISO)
iron dichloride  (ISO)
isotretinoin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
melatonin  (EXP)
metformin  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
Muraglitazar  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
nickel atom  (ISO)
nitrofen  (ISO)
O-methyleugenol  (ISO)
orphenadrine  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
tetracycline  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trametinib  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrial matrix  (IBA,IDA,TAS)
mitochondrion  (HDA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Overweight, but not hypertension, is associated with SAH polymorphisms in Caucasians with essential hypertension. Benjafield AV, etal., Hypertens Res. 2003 Aug;26(8):591-5.
2. Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics Chen Y, etal., Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2001 Oct;18(5):366-70.
3. Impaired butyrate oxidation in ulcerative colitis is due to decreased butyrate uptake and a defect in the oxidation pathway. De Preter V, etal., Inflamm Bowel Dis. 2012 Jun;18(6):1127-36. doi: 10.1002/ibd.21894. Epub 2011 Oct 10.
4. SA gene and blood pressure cosegregation using Dahl salt-sensitive rats. Harris EL, etal., Am J Hypertens 1993 Apr;6(4):330-4.
5. Molecular genetics of the SA-gene: cosegregation with hypertension and mapping to rat chromosome 1. Lindpaintner K, etal., J Hypertens 1993 Jan;11(1):19-23
6. Role of genetic polymorphism in the SA gene on the blood pressure and prognosis of renal function in patients with immunoglobulin A nephropathy. Narita I, etal., Hypertens Res. 2002 Nov;25(6):831-6.
7. Retinal gene profiling in a hereditary rodent model of elevated intraocular pressure. Naskar R and Thanos S, Mol Vis. 2006 Oct 18;12:1199-210.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Evidence for 26 distinct acyl-coenzyme A synthetase genes in the human genome. Watkins PA, etal., J Lipid Res. 2007 Dec;48(12):2736-50. Epub 2007 Aug 30.
Additional References at PubMed
PMID:8812459   PMID:9507200   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11255012   PMID:11470804   PMID:12466851   PMID:12477932   PMID:12707288   PMID:14651853  
PMID:14681479   PMID:15525578   PMID:16141072   PMID:16141073   PMID:18614015   PMID:21267068   PMID:21873635   PMID:25744306   PMID:38191811  


Genomics

Comparative Map Data
Acsm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397119,360,106 - 119,384,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7119,360,146 - 119,386,736 (+)EnsemblGRCm39 Ensembl
GRCm387119,760,883 - 119,784,896 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7119,760,923 - 119,787,513 (+)EnsemblGRCm38mm10GRCm38
MGSCv377126,904,437 - 126,928,410 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367119,552,072 - 119,576,045 (+)NCBIMGSCv36mm8
Celera7119,680,775 - 119,704,303 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map764.17NCBI
ACSM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381620,674,405 - 20,797,581 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1620,610,243 - 20,797,581 (+)EnsemblGRCh38hg38GRCh38
GRCh371620,775,336 - 20,808,903 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361620,682,813 - 20,715,980 (+)NCBINCBI36Build 36hg18NCBI36
Build 341620,682,812 - 20,715,979NCBI
Celera1620,085,531 - 20,118,378 (+)NCBICelera
Cytogenetic Map16p12.3NCBI
HuRef1619,310,909 - 19,343,750 (+)NCBIHuRef
CHM1_11620,862,551 - 20,895,398 (+)NCBICHM1_1
T2T-CHM13v2.01620,605,311 - 20,728,512 (+)NCBIT2T-CHM13v2.0
Acsm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81183,564,652 - 183,591,328 (+)NCBIGRCr8
mRatBN7.21174,133,260 - 174,159,966 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1174,133,288 - 174,160,184 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1182,448,828 - 182,475,531 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01189,634,871 - 189,661,572 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,371,819 - 182,397,104 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01189,514,504 - 189,541,233 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1189,514,553 - 189,541,224 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01196,449,042 - 196,475,596 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41178,054,386 - 178,081,751 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11178,212,017 - 178,214,310 (+)NCBI
Celera1171,883,756 - 171,910,443 (+)NCBICelera
Cytogenetic Map1q35NCBI
Acsm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495549372,633 - 96,348 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495549373,306 - 95,521 (+)NCBIChiLan1.0ChiLan1.0
ACSM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21821,917,691 - 21,964,777 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11626,438,183 - 26,485,179 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01617,611,715 - 17,644,587 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11620,796,425 - 20,829,734 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1620,796,425 - 20,829,315 (+)Ensemblpanpan1.1panPan2
ACSM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1624,558,010 - 24,594,326 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl624,558,142 - 24,582,728 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha622,794,570 - 22,815,828 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0624,713,351 - 24,738,717 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl624,713,760 - 24,738,638 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1624,514,283 - 24,539,642 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0624,409,510 - 24,434,851 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0624,793,586 - 24,812,573 (-)NCBIUU_Cfam_GSD_1.0
Acsm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344117,980,363 - 117,997,679 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365016,078,219 - 6,095,538 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365016,077,366 - 6,095,432 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACSM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl325,247,725 - 25,283,709 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1325,247,723 - 25,284,063 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2326,031,989 - 26,068,440 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACSM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1518,876,390 - 18,929,914 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl518,904,110 - 18,929,729 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606810,973,567 - 11,023,810 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acsm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247826,930,505 - 6,959,069 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247826,930,461 - 6,958,867 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Acsm3
867 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1095
Count of miRNA genes:415
Interacting mature miRNAs:496
Transcripts:ENSMUST00000063770, ENSMUST00000106526, ENSMUST00000106527, ENSMUST00000106528, ENSMUST00000106529, ENSMUST00000149598, ENSMUST00000149766, ENSMUST00000154828
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse

Markers in Region
G67046  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387119,786,451 - 119,786,979UniSTSGRCm38
MGSCv377126,929,965 - 126,930,493UniSTSGRCm37
Celera7119,705,858 - 119,706,386UniSTS
Cytogenetic Map7F3UniSTS
UniSTS:235765  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387119,783,947 - 119,784,220UniSTSGRCm38
MGSCv377126,927,461 - 126,927,734UniSTSGRCm37
Celera7119,703,354 - 119,703,627UniSTS
Cytogenetic Map7F3UniSTS
UniSTS:235768  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387119,784,625 - 119,784,824UniSTSGRCm38
MGSCv377126,928,139 - 126,928,338UniSTSGRCm37
Celera7119,704,032 - 119,704,231UniSTS
Cytogenetic Map7F3UniSTS
BE108110  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387119,780,818 - 119,780,989UniSTSGRCm38
MGSCv377126,924,332 - 126,924,503UniSTSGRCm37
Celera7119,700,222 - 119,700,393UniSTS
Cytogenetic Map7F3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_016870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_212441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_212442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017322060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017322061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017322062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017322063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB022340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF068246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY064696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB846489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000063770   ⟹   ENSMUSP00000068803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7119,360,147 - 119,384,114 (+)Ensembl
GRCm38.p6 Ensembl7119,760,924 - 119,784,891 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106526   ⟹   ENSMUSP00000102136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7119,365,594 - 119,384,119 (+)Ensembl
GRCm38.p6 Ensembl7119,766,371 - 119,784,896 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106527   ⟹   ENSMUSP00000102137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7119,360,146 - 119,384,116 (+)Ensembl
GRCm38.p6 Ensembl7119,760,923 - 119,784,893 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106528   ⟹   ENSMUSP00000102138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7119,360,146 - 119,384,112 (+)Ensembl
GRCm38.p6 Ensembl7119,760,923 - 119,784,889 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106529   ⟹   ENSMUSP00000102139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7119,360,147 - 119,386,736 (+)Ensembl
GRCm38.p6 Ensembl7119,760,924 - 119,787,513 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149598
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7119,376,269 - 119,380,236 (+)Ensembl
GRCm38.p6 Ensembl7119,777,046 - 119,781,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7119,373,767 - 119,378,452 (+)Ensembl
GRCm38.p6 Ensembl7119,774,544 - 119,779,229 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7119,379,959 - 119,380,277 (+)Ensembl
GRCm38.p6 Ensembl7119,780,736 - 119,781,054 (+)Ensembl
RefSeq Acc Id: NM_016870   ⟹   NP_058566
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397119,360,174 - 119,384,119 (+)NCBI
GRCm387119,760,923 - 119,784,896 (+)NCBI
MGSCv377126,904,437 - 126,928,410 (+)RGD
Celera7119,680,775 - 119,704,303 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_212441   ⟹   NP_997606
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397119,360,174 - 119,384,119 (+)NCBI
GRCm387119,760,923 - 119,784,889 (+)NCBI
MGSCv377126,904,437 - 126,928,410 (+)RGD
Celera7119,680,775 - 119,704,303 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_212442   ⟹   NP_997607
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397119,360,174 - 119,384,119 (+)NCBI
GRCm387119,760,923 - 119,784,893 (+)NCBI
MGSCv377126,904,437 - 126,928,410 (+)RGD
Celera7119,680,775 - 119,704,303 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507475   ⟹   XP_006507538
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397119,360,106 - 119,384,117 (+)NCBI
GRCm387119,760,883 - 119,784,896 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017322060   ⟹   XP_017177549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397119,360,106 - 119,384,117 (+)NCBI
GRCm387119,760,883 - 119,784,896 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017322061   ⟹   XP_017177550
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397119,360,128 - 119,384,117 (+)NCBI
GRCm387119,760,904 - 119,784,896 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017322062   ⟹   XP_017177551
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397119,360,156 - 119,384,117 (+)NCBI
GRCm387119,760,932 - 119,784,896 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017322063   ⟹   XP_017177552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397119,360,106 - 119,384,117 (+)NCBI
GRCm387119,760,883 - 119,784,896 (+)NCBI
Sequence:
RefSeq Acc Id: NP_997607   ⟸   NM_212442
- UniProtKB: Q9Z2F3 (UniProtKB/Swiss-Prot),   Q91WI1 (UniProtKB/Swiss-Prot),   Q8BRY2 (UniProtKB/Swiss-Prot),   Q9Z2X0 (UniProtKB/Swiss-Prot),   Q3UNX5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_997606   ⟸   NM_212441
- UniProtKB: Q9Z2F3 (UniProtKB/Swiss-Prot),   Q91WI1 (UniProtKB/Swiss-Prot),   Q8BRY2 (UniProtKB/Swiss-Prot),   Q9Z2X0 (UniProtKB/Swiss-Prot),   Q3UNX5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_058566   ⟸   NM_016870
- UniProtKB: Q9Z2F3 (UniProtKB/Swiss-Prot),   Q91WI1 (UniProtKB/Swiss-Prot),   Q8BRY2 (UniProtKB/Swiss-Prot),   Q9Z2X0 (UniProtKB/Swiss-Prot),   Q3UNX5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006507538   ⟸   XM_006507475
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017177549   ⟸   XM_017322060
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017177552   ⟸   XM_017322063
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017177550   ⟸   XM_017322061
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017177551   ⟸   XM_017322062
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000102136   ⟸   ENSMUST00000106526
RefSeq Acc Id: ENSMUSP00000102138   ⟸   ENSMUST00000106528
RefSeq Acc Id: ENSMUSP00000102137   ⟸   ENSMUST00000106527
RefSeq Acc Id: ENSMUSP00000102139   ⟸   ENSMUST00000106529
RefSeq Acc Id: ENSMUSP00000068803   ⟸   ENSMUST00000063770

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UNX5-F1-model_v2 AlphaFold Q3UNX5 1-580 view protein structure

Promoters
RGD ID:8665391
Promoter ID:EPDNEW_M10727
Type:initiation region
Name:Acsm3_1
Description:Mus musculus acyl-CoA synthetase medium-chain family member 3, transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387119,760,952 - 119,761,012EPDNEW
RGD ID:6840483
Promoter ID:MM_KWN:52482
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ENSMUST00000098081,   ENSMUST00000106529,   NM_016870,   UC009JLR.1,   UC009JLS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367126,904,131 - 126,904,631 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99538 AgrOrtholog
Ensembl Genes ENSMUSG00000030935 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000063770 ENTREZGENE
  ENSMUST00000063770.10 UniProtKB/Swiss-Prot
  ENSMUST00000106526.2 UniProtKB/Swiss-Prot
  ENSMUST00000106527 ENTREZGENE
  ENSMUST00000106527.8 UniProtKB/Swiss-Prot
  ENSMUST00000106528 ENTREZGENE
  ENSMUST00000106528.8 UniProtKB/Swiss-Prot
  ENSMUST00000106529.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.300.30 UniProtKB/Swiss-Prot
  3.40.50.12780 UniProtKB/Swiss-Prot
InterPro AMP-bd_C UniProtKB/Swiss-Prot
  AMP-bd_C_sf UniProtKB/Swiss-Prot
  AMP-binding_CS UniProtKB/Swiss-Prot
  AMP-dep_Synth/Lig UniProtKB/Swiss-Prot
  AMP-dep_Synthh-like_sf UniProtKB/Swiss-Prot
KEGG Report mmu:20216 UniProtKB/Swiss-Prot
MGD MGI:99538 ENTREZGENE
NCBI Gene 20216 ENTREZGENE
PANTHER ACYL-COENZYME A SYNTHETASE UniProtKB/Swiss-Prot
  ACYL-COENZYME A SYNTHETASE ACSM3, MITOCHONDRIAL UniProtKB/Swiss-Prot
Pfam AMP-binding UniProtKB/Swiss-Prot
  AMP-binding_C UniProtKB/Swiss-Prot
PhenoGen Acsm3 PhenoGen
PROSITE AMP_BINDING UniProtKB/Swiss-Prot
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/Swiss-Prot
UniProt ACSM3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BRY2 ENTREZGENE
  Q91WI1 ENTREZGENE
  Q9Z2F3 ENTREZGENE
  Q9Z2X0 ENTREZGENE
UniProt Secondary Q8BRY2 UniProtKB/Swiss-Prot
  Q91WI1 UniProtKB/Swiss-Prot
  Q9Z2F3 UniProtKB/Swiss-Prot
  Q9Z2X0 UniProtKB/Swiss-Prot