Scp2-ps2 (sterol carrier protein 2, pseudogene 2) - Rat Genome Database
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Gene: Scp2-ps2 (sterol carrier protein 2, pseudogene 2) Mus musculus
Analyze
Symbol: Scp2-ps2
Name: sterol carrier protein 2, pseudogene 2
RGD ID: 1618408
MGI Page MGI
Description: INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene; clofibrate
Type: pseudo
RefSeq Status: INFERRED
Related Functional Gene: Scp2  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399123,136,573 - 123,137,051 (-)NCBIGRCm39mm39
GRCm389123,307,508 - 123,307,986 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9123,306,600 - 123,317,998 (-)EnsemblGRCm38mm10GRCm38
MGSCv379123,216,626 - 123,217,104 (-)NCBIGRCm37mm9NCBIm37
MGSCv369123,156,206 - 123,156,684 (-)NCBImm8
Celera9123,759,960 - 123,760,438 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map973.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8751375   PMID:12461651  


Genomics

Position Markers
RH128646  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389123,307,307 - 123,307,516UniSTSGRCm38
GRCm384108,044,549 - 108,044,758UniSTSGRCm38
MGSCv374107,717,154 - 107,717,363UniSTSGRCm37
MGSCv379123,216,425 - 123,216,634UniSTSGRCm37
Celera9123,759,759 - 123,759,968UniSTS
Celera4106,394,172 - 106,394,381UniSTS
Cytogenetic Map9F4UniSTS
Cytogenetic Map4C7UniSTS
cM Map970.5UniSTS
cM Map452.0UniSTS
RH125881  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389123,307,218 - 123,307,383UniSTSGRCm38
GRCm384108,044,460 - 108,044,625UniSTSGRCm38
MGSCv374107,717,065 - 107,717,230UniSTSGRCm37
MGSCv379123,216,336 - 123,216,501UniSTSGRCm37
Celera9123,759,670 - 123,759,835UniSTS
Celera4106,394,083 - 106,394,248UniSTS
Cytogenetic Map9F4UniSTS
Cytogenetic Map4C7UniSTS
cM Map970.5UniSTS
cM Map452.0UniSTS
RH126486  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389123,307,234 - 123,307,478UniSTSGRCm38
GRCm384108,044,476 - 108,044,720UniSTSGRCm38
MGSCv374107,717,081 - 107,717,325UniSTSGRCm37
MGSCv379123,216,352 - 123,216,596UniSTSGRCm37
Celera9123,759,686 - 123,759,930UniSTS
Celera4106,394,099 - 106,394,343UniSTS
Cytogenetic Map9F4UniSTS
Cytogenetic Map4C7UniSTS
cM Map970.5UniSTS
cM Map452.0UniSTS
Whitehead/MRC_RH41471.55UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:89
Interacting mature miRNAs:89
Transcripts:ENSMUST00000072166
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000072166
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9123,307,512 - 123,307,989 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213851
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9123,307,201 - 123,317,998 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216438
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9123,306,600 - 123,307,969 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000058492 Ensembl
MGD MGI:107679 ENTREZGENE
NCBI Gene 20282 ENTREZGENE
PhenoGen Scp2-ps2 PhenoGen