Scp2-ps2 (sterol carrier protein 2, pseudogene 2)

Functional Annotation unavailable	Annotation Distribution unavailable	Genomic Variants unavailble Genomic Variants unavailable
Functional Annotation	Annotation Distribution	Genomic Variants

Protein-Protein Interactions unavailable	Genome Viewer unavailable	Damaging Variants unavailble Damaging Variants unavailable
Protein-Protein Interactions	Genome Viewer	Damaging Variants

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Gene: Scp2-ps2 (sterol carrier protein 2, pseudogene 2) Mus musculus

Analyze

General
Array IDs
References

Symbol:

Scp2-ps2

Name:

sterol carrier protein 2, pseudogene 2

Description:

INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene; clofibrate

Type:

pseudo

RefSeq Status:

INFERRED

Related Functional Gene:

Scp2

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm38	9	123,307,508 - 123,307,986 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
MGSCv37	9	123,216,626 - 123,217,104 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	123,156,206 - 123,156,684 (-)	NCBI			mm8
Celera	9	123,759,960 - 123,760,438 (-)	NCBI		Celera
Cytogenetic Map	9	F4	NCBI
cM Map	9	73.92	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Gene-Chemical Interaction Annotations

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	EXP		6480464	AHR protein inhibits the reaction [Tetrachlorodibenzodioxin results in increased expression of SCP2-PS2 mRNA]	CTD	PMID:15034205
2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of SCP2-PS2 mRNA	CTD	PMID:15034205
benzo[a]pyrene	multiple interactions	EXP		6480464	AHR protein inhibits the reaction [Benzo(a)pyrene results in increased expression of SCP2-PS2 mRNA]	CTD	PMID:15034205
benzo[a]pyrene	increases expression	EXP		6480464	Benzo(a)pyrene results in increased expression of SCP2-PS2 mRNA	CTD	PMID:15034205
clofibrate	decreases expression	EXP		6480464	Clofibrate results in decreased expression of SCP2-PS2 mRNA	CTD	PMID:17585979

Gene-Chemical Interaction Annotations

	2,3,7,8-tetrachlorodibenzodioxine (EXP)
	benzo[a]pyrene (EXP)

clofibrate (EXP)

References - curated

1.	RGD automated import pipeline for gene-chemical interactions

References - uncurated

PubMed

8751375 12461651

Genomics

Position Markers

RH128646

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	123,307,307 - 123,307,516	UniSTS	GRCm38
GRCm38	4	108,044,549 - 108,044,758	UniSTS	GRCm38
MGSCv37	4	107,717,154 - 107,717,363	UniSTS	GRCm37
MGSCv37	9	123,216,425 - 123,216,634	UniSTS	GRCm37
Celera	9	123,759,759 - 123,759,968	UniSTS
Celera	4	106,394,172 - 106,394,381	UniSTS
Cytogenetic Map	9	F4	UniSTS
Cytogenetic Map	4	C7	UniSTS
cM Map	9	70.5	UniSTS
cM Map	4	52.0	UniSTS

RH125881

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	123,307,218 - 123,307,383	UniSTS	GRCm38
GRCm38	4	108,044,460 - 108,044,625	UniSTS	GRCm38
MGSCv37	4	107,717,065 - 107,717,230	UniSTS	GRCm37
MGSCv37	9	123,216,336 - 123,216,501	UniSTS	GRCm37
Celera	9	123,759,670 - 123,759,835	UniSTS
Celera	4	106,394,083 - 106,394,248	UniSTS
Cytogenetic Map	9	F4	UniSTS
Cytogenetic Map	4	C7	UniSTS
cM Map	9	70.5	UniSTS
cM Map	4	52.0	UniSTS

RH126486

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	123,307,234 - 123,307,478	UniSTS	GRCm38
GRCm38	4	108,044,476 - 108,044,720	UniSTS	GRCm38
MGSCv37	4	107,717,081 - 107,717,325	UniSTS	GRCm37
MGSCv37	9	123,216,352 - 123,216,596	UniSTS	GRCm37
Celera	9	123,759,686 - 123,759,930	UniSTS
Celera	4	106,394,099 - 106,394,343	UniSTS
Cytogenetic Map	9	F4	UniSTS
Cytogenetic Map	4	C7	UniSTS
cM Map	9	70.5	UniSTS
cM Map	4	52.0	UniSTS
Whitehead/MRC_RH	4	1471.55	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301649	Psl1_m	promotion susceptibility QTL 1 (mouse)			Not determined		9	89412277	123412396	Mouse
12910770	Splic1_m	spleen iron content 1 (mouse)					9	91413879	124595110	Mouse
12910772	Lvic6_m	liver iron content 6 (mouse)					9	91413879	124595110	Mouse
12910773	Splic3_m	spleen iron content 3 (mouse)					9	91413879	124595110	Mouse
1558767	Skmw11_m	skeletal muscle weight 11 (mouse)			Not determined		9	91641084	124595110	Mouse
13463474	Hbbcq5_m	hemoglobin concentration QTL 5 (mouse)					9	91641084	124595110	Mouse
13463475	Hctq7_m	hematocrit QTL 7 (mouse)					9	91641084	124595110	Mouse
13463477	Rbc9_m	red blood cell count 9 (mouse)					9	91641084	124595110	Mouse
13463478	Mchq18_m	mean corpuscular hemoglobin QTL 18 (mouse)					9	91641084	124595110	Mouse
13463480	Mchcq2_m	mean corpuscular hemoglobin concentration QTL 2 (mouse)					9	91641084	124595110	Mouse
12904937	Edlmmq9_m	extensor digitorum longus muscle mass QTL 9 (mouse)					9	91683173	124595110	Mouse
12904947	Tammq7_m	tibialis anterior muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
12904961	Gmmq7_m	gastrocnemius muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
1302001	Bdln5_m	body length 5 (mouse)			Not determined		9	93762590	124595110	Mouse
1301484	Bwq6_m	body weight (mouse)			Not determined		9	93762590	124595110	Mouse
14746992	Manh67_m	mandible shape 67 (mouse)					9	94036768	124595110	Mouse
11537364	Cnes5_m	C. neoformans susceptibility locus 5 (mouse)					9	96917590	124595110	Mouse
1301297	Lcho1_m	liver cholesterol 1 (mouse)			Not determined		9	101060861	124595110	Mouse
1357627	Tgq2_m	triglyceride QTL 2 (mouse)			Not determined		9	102000187	124595110	Mouse
1357648	Obq18_m	obesity QTL 18 (mouse)			Not determined		9	102000187	124595110	Mouse
1301789	Pbwg4_m	postnatal body weight growth 4 (mouse)			Not determined		9	103289445	124595110	Mouse
10412290	Pvacm1l_m	plasma vascular cell adhesion molecule 1 levels (mouse)			Not determined		9	103289445	124595110	Mouse
12879896	Berr3_m	berghei resistance locus 3 (mouse)					9	103289445	124595110	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	90
Count of miRNA genes:	89
Interacting mature miRNAs:	89
Transcripts:	ENSMUST00000072166
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Sequence

Nucleotide Sequences

RefSeq Transcripts	NG_001457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC164123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X87685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:107679	ENTREZGENE
NCBI Gene	20282	ENTREZGENE
PhenoGen	Scp2-ps2	PhenoGen

More on Scp2-ps2
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: mm9 mm10
	MGI Report
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	1618408
Created:	2007-05-01
Species:	Mus musculus
Last Modified:	2019-09-12
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.