Vmn1r49 (vomeronasal 1, receptor 49) - Rat Genome Database
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Gene: Vmn1r49 (vomeronasal 1, receptor 49) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r49
Name: vomeronasal 1, receptor 49
RGD ID: 1618401
MGI Page MGI
Description: Orthologous to several human genes including VN1R17P (vomeronasal 1 receptor 17 pseudogene); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; potassium dichromate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: V; V1; V1r; V1r5; V1rb2; vomernasal 1 receptor Vmn1r49; vomeronasal 1 receptor Vmn1r49; vomeronasal 1, receptor B2; vomeronasal organ family 1, receptor 5; vomeronasal organ family 1, receptor B2; vomeronasal receptor VRi2; vomeronasal type 1 receptor B2; vomeronasal type-1 receptor 49; vomeronasal type-1 receptor B2; VRi2
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,049,068 - 90,050,000 (-)NCBIGRCm39mm39
GRCm39 Ensembl690,048,875 - 90,055,488 (-)Ensembl
GRCm38690,072,086 - 90,073,018 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,071,893 - 90,078,506 (-)EnsemblGRCm38mm10GRCm38
MGSCv37690,022,080 - 90,023,012 (-)NCBIGRCm37mm9NCBIm37
MGSCv36690,037,590 - 90,038,522 (-)NCBImm8
Celera691,966,217 - 91,967,149 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. RGD automated import pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10219241   PMID:11116090   PMID:12214233   PMID:12466851   PMID:16531066   PMID:17273929   PMID:17537788   PMID:17942483   PMID:19200072   PMID:19952141   PMID:20003482   PMID:21873635  
PMID:23664818  


Genomics

Position Markers
UniSTS:490596  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,072,086 - 90,073,018UniSTSGRCm38
MGSCv37690,022,080 - 90,023,012UniSTSGRCm37
Celera691,966,217 - 91,967,149UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.0UniSTS
UniSTS:493936  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,072,062 - 90,073,105UniSTSGRCm38
MGSCv37690,022,056 - 90,023,099UniSTSGRCm37
Celera691,966,193 - 91,967,236UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:28
Interacting mature miRNAs:28
Transcripts:ENSMUST00000071865
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF132114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ849309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000071865   ⟹   ENSMUSP00000071762
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,072,086 - 90,073,018 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203791   ⟹   ENSMUSP00000145107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,071,893 - 90,078,506 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226368   ⟹   ENSMUSP00000154456
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,071,893 - 90,078,506 (-)Ensembl
RefSeq Acc Id: NM_011911   ⟹   NP_036041
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,049,068 - 90,050,000 (-)NCBI
GRCm38690,072,086 - 90,073,018 (-)NCBI
MGSCv37690,022,080 - 90,023,012 (-)RGD
Celera691,966,217 - 91,967,149 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_036041 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD28626 (Get FASTA)   NCBI Sequence Viewer  
  AAG42084 (Get FASTA)   NCBI Sequence Viewer  
  AEE99834 (Get FASTA)   NCBI Sequence Viewer  
  AEE99835 (Get FASTA)   NCBI Sequence Viewer  
  AEE99836 (Get FASTA)   NCBI Sequence Viewer  
  AEE99837 (Get FASTA)   NCBI Sequence Viewer  
  AEE99838 (Get FASTA)   NCBI Sequence Viewer  
  AEE99839 (Get FASTA)   NCBI Sequence Viewer  
  AEE99840 (Get FASTA)   NCBI Sequence Viewer  
  AEE99841 (Get FASTA)   NCBI Sequence Viewer  
  AEE99842 (Get FASTA)   NCBI Sequence Viewer  
  AEE99843 (Get FASTA)   NCBI Sequence Viewer  
  AEE99844 (Get FASTA)   NCBI Sequence Viewer  
  AEE99845 (Get FASTA)   NCBI Sequence Viewer  
  AEE99846 (Get FASTA)   NCBI Sequence Viewer  
  AEE99847 (Get FASTA)   NCBI Sequence Viewer  
  AEE99848 (Get FASTA)   NCBI Sequence Viewer  
  AEE99849 (Get FASTA)   NCBI Sequence Viewer  
  AEE99850 (Get FASTA)   NCBI Sequence Viewer  
  AEE99851 (Get FASTA)   NCBI Sequence Viewer  
  AEE99852 (Get FASTA)   NCBI Sequence Viewer  
  AEE99853 (Get FASTA)   NCBI Sequence Viewer  
  AEE99854 (Get FASTA)   NCBI Sequence Viewer  
  AEE99855 (Get FASTA)   NCBI Sequence Viewer  
  AEE99856 (Get FASTA)   NCBI Sequence Viewer  
  AEE99857 (Get FASTA)   NCBI Sequence Viewer  
  AEE99858 (Get FASTA)   NCBI Sequence Viewer  
  AEE99859 (Get FASTA)   NCBI Sequence Viewer  
  AEE99860 (Get FASTA)   NCBI Sequence Viewer  
  CAH18507 (Get FASTA)   NCBI Sequence Viewer  
  EDK99275 (Get FASTA)   NCBI Sequence Viewer  
  Q9WUF1 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_036041   ⟸   NM_011911
- UniProtKB: Q9WUF1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000145107   ⟸   ENSMUST00000203791
RefSeq Acc Id: ENSMUSP00000071762   ⟸   ENSMUST00000071865
RefSeq Acc Id: ENSMUSP00000154456   ⟸   ENSMUST00000226368


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1344384 AgrOrtholog
Ensembl Genes ENSMUSG00000095932 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000071762 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145107 UniProtKB/Swiss-Prot
  ENSMUSP00000154456 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000071865 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000203791 UniProtKB/Swiss-Prot
  ENSMUST00000226368 UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Vmron_rcpt_1 UniProtKB/Swiss-Prot
KEGG Report mmu:24112 UniProtKB/Swiss-Prot
MGD MGI:1344384 ENTREZGENE
NCBI Gene 24112 ENTREZGENE
PANTHER PTHR24062 UniProtKB/Swiss-Prot
Pfam V1R UniProtKB/Swiss-Prot
PhenoGen Vmn1r49 PhenoGen
PRINTS VOMERONASL1R UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
UniProt Q9WUF1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r49  vomeronasal 1, receptor 49  V1rb2  vomeronasal 1, receptor B2  Symbol and/or name change 5135510 APPROVED