Pnkd (paroxysmal nonkinesiogenic dyskinesia) - Rat Genome Database

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Gene: Pnkd (paroxysmal nonkinesiogenic dyskinesia) Mus musculus
Analyze
Symbol: Pnkd
Name: paroxysmal nonkinesiogenic dyskinesia
RGD ID: 1618392
MGI Page MGI
Description: Predicted to enable hydroxyacylglutathione hydrolase activity and metal ion binding activity. Acts upstream of or within modulation of chemical synaptic transmission; neuromuscular process controlling posture; and regulation of dopamine metabolic process. Located in mitochondrion. Is expressed in central nervous system and retina. Used to study paroxysmal nonkinesigenic dyskinesia 1. Human ortholog(s) of this gene implicated in paroxysmal nonkinesigenic dyskinesia 1. Orthologous to human PNKD (PNKD metallo-beta-lactamase domain containing); INTERACTS WITH 1,1-dichloroethene; 1,2-dichloroethane; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2210013N15Rik; 2810403H05Rik; AI854243; brain protein 17; Brp; Brp17; MNCb-5687; MR-1; myofibrillogenesis regulator 1; paroxysmal nonkinesiogenic dyskinesia protein; probable hydrolase PNKD; Tahccp2; trans-activated by hepatitis C virus core protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,323,757 - 74,392,851 (+)NCBIGRCm39mm39
GRCm39 Ensembl174,324,089 - 74,392,853 (+)Ensembl
GRCm38174,284,599 - 74,353,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,284,930 - 74,353,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,331,608 - 74,400,266 (+)NCBIGRCm37mm9NCBIm37
MGSCv36174,218,241 - 74,286,899 (+)NCBImm8
Celera174,846,387 - 74,914,676 (+)NCBICelera
Cytogenetic Map1C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
membrane  (ISO)
mitochondrion  (HDA,ISO)
nucleus  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15188498   PMID:15368895   PMID:15496428  
PMID:15782199   PMID:15859324   PMID:16141072   PMID:16141073   PMID:16537572   PMID:16602821   PMID:17420335   PMID:18614015   PMID:18799693   PMID:20040360   PMID:20562862   PMID:21487022  
PMID:21677750   PMID:22214848   PMID:25730884  


Genomics

Comparative Map Data
Pnkd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,323,757 - 74,392,851 (+)NCBIGRCm39mm39
GRCm39 Ensembl174,324,089 - 74,392,853 (+)Ensembl
GRCm38174,284,599 - 74,353,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,284,930 - 74,353,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,331,608 - 74,400,266 (+)NCBIGRCm37mm9NCBIm37
MGSCv36174,218,241 - 74,286,899 (+)NCBImm8
Celera174,846,387 - 74,914,676 (+)NCBICelera
Cytogenetic Map1C3NCBI
PNKD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2218,270,392 - 218,346,793 (+)EnsemblGRCh38hg38GRCh38
GRCh382218,270,485 - 218,346,793 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372219,135,242 - 219,211,516 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,843,359 - 218,919,760 (+)NCBINCBI36hg18NCBI36
Celera2212,901,694 - 212,978,127 (+)NCBI
Cytogenetic Map2q35NCBI
HuRef2210,988,212 - 211,064,476 (+)NCBIHuRef
CHM1_12219,141,604 - 219,218,160 (+)NCBICHM1_1
Pnkd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2975,868,620 - 75,937,126 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl975,867,468 - 75,937,124 (+)Ensembl
Rnor_6.0981,566,074 - 81,634,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,566,074 - 81,634,534 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,332,155 - 81,400,726 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,611,610 - 73,697,690 (+)NCBIRGSC3.4rn4RGSC3.4
Celera973,445,105 - 73,513,517 (+)NCBICelera
Cytogenetic Map9q33NCBI
Pnkd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545315,030,436 - 15,104,084 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545315,030,436 - 15,104,084 (-)NCBIChiLan1.0ChiLan1.0
PNKD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B224,127,504 - 224,204,046 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,127,504 - 224,204,046 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B105,529,775 - 105,606,207 (+)NCBIMhudiblu_PPA_v0panPan3
PNKD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13724,948,763 - 25,008,542 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3724,948,932 - 25,005,144 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3725,769,014 - 25,828,461 (+)NCBI
ROS_Cfam_1.03724,964,913 - 25,024,609 (+)NCBI
UMICH_Zoey_3.13724,870,239 - 24,929,662 (+)NCBI
UNSW_CanFamBas_1.03724,804,494 - 24,863,959 (+)NCBI
UU_Cfam_GSD_1.03724,824,128 - 24,883,632 (+)NCBI
Pnkd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,457,181 - 174,522,677 (+)NCBI
SpeTri2.0NW_004936569799,963 - 865,462 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNKD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,345,551 - 120,413,353 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,345,541 - 120,411,648 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,367,669 - 133,370,492 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PNKD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,152,005 - 104,227,624 (+)NCBI
ChlSab1.1 Ensembl10104,152,081 - 104,229,219 (+)Ensembl
Vero_WHO_p1.0NW_02366604095,173,913 - 95,249,814 (-)NCBI
Pnkd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248236,675,702 - 6,761,133 (-)NCBI

Position Markers
RH128628  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381787,968,795 - 87,969,000UniSTSGRCm38
GRCm38174,287,105 - 74,287,310UniSTSGRCm38
MGSCv371788,368,135 - 88,368,340UniSTSGRCm37
MGSCv37174,333,679 - 74,333,884UniSTSGRCm37
Celera1792,379,093 - 92,379,298UniSTS
Celera174,848,458 - 74,848,663UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1C3UniSTS
AU024746  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,288,651 - 74,288,767UniSTSGRCm38
MGSCv37174,335,225 - 74,335,341UniSTSGRCm37
Celera174,850,004 - 74,850,120UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH11104.13UniSTS
AA960455  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,288,362 - 74,288,581UniSTSGRCm38
MGSCv37174,334,936 - 74,335,155UniSTSGRCm37
Celera174,849,715 - 74,849,934UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH16318.51UniSTS
RH126458  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,288,255 - 74,288,504UniSTSGRCm38
MGSCv37174,334,829 - 74,335,078UniSTSGRCm37
Celera174,849,608 - 74,849,857UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH11103.82UniSTS
RH127186  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,298,884 - 74,299,094UniSTSGRCm38
MGSCv37174,345,458 - 74,345,668UniSTSGRCm37
Celera174,860,234 - 74,860,444UniSTS
Cytogenetic Map1C3UniSTS
cM Map141.0UniSTS
Whitehead/MRC_RH11098.45UniSTS
AI854243  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381787,968,945 - 87,969,066UniSTSGRCm38
GRCm38174,285,958 - 74,287,160UniSTSGRCm38
MGSCv371788,368,285 - 88,368,406UniSTSGRCm37
MGSCv37174,332,532 - 74,333,734UniSTSGRCm37
Celera1792,379,243 - 92,379,364UniSTS
Celera174,847,311 - 74,848,513UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1C3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134721057150318120Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134721057150318120Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134721057150318120Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13909372774477206Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139093727126517573Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14123396575234112Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14123624075236240Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4222050876220508Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14289887276899008Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14590759679907723Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14681553180815680Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14681553180815680Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14731073581310854Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14884984782850051Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14884984782850051Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14885318682853326Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15085105784851057Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5138244685382446Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15593578989935898Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15622705590227201Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15622705590227201Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15668776390687918Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15668776390687918Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15790219291902192Mouse
14747009Manh49_mmandible shape 49 (mouse)15790219291902192Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15795281891952921Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15795281891952921Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15795281891952921Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15857254792572799Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15857254792572799Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162907596120601949Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163880843153681816Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16584984788568379Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167300000129800000Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6803218686307305Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170205811104211835Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7158552078206507Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173227055108910684Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73687970107688108Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173687970107688108Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173716016147249632Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17410000081800000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3102
Count of miRNA genes:670
Interacting mature miRNAs:803
Transcripts:ENSMUST00000027370, ENSMUST00000087225, ENSMUST00000087226, ENSMUST00000113805, ENSMUST00000129219, ENSMUST00000138620, ENSMUST00000152492
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB041609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC098570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF318058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY039041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY039042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY299972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU604861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK623847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000027370   ⟹   ENSMUSP00000027370
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,204 - 74,392,843 (+)Ensembl
GRCm38.p6 Ensembl174,285,045 - 74,353,684 (+)Ensembl
RefSeq Acc Id: ENSMUST00000087225   ⟹   ENSMUSP00000084477
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,371,769 - 74,392,845 (+)Ensembl
GRCm38.p6 Ensembl174,332,610 - 74,353,686 (+)Ensembl
RefSeq Acc Id: ENSMUST00000087226   ⟹   ENSMUSP00000084478
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,214 - 74,392,853 (+)Ensembl
GRCm38.p6 Ensembl174,285,055 - 74,353,694 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113805   ⟹   ENSMUSP00000109436
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,089 - 74,326,613 (+)Ensembl
GRCm38.p6 Ensembl174,284,930 - 74,287,454 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129219
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,209 - 74,325,793 (+)Ensembl
GRCm38.p6 Ensembl174,285,050 - 74,286,634 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138620
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,213 - 74,386,725 (+)Ensembl
GRCm38.p6 Ensembl174,285,054 - 74,347,566 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152492
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,936 - 74,326,432 (+)Ensembl
GRCm38.p6 Ensembl174,285,777 - 74,287,273 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190398
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,371,822 - 74,375,420 (+)Ensembl
GRCm38.p6 Ensembl174,332,663 - 74,336,261 (+)Ensembl
RefSeq Acc Id: NM_001039509   ⟹   NP_001034598
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,324,193 - 74,392,851 (+)NCBI
GRCm38174,285,034 - 74,353,692 (+)NCBI
MGSCv37174,331,608 - 74,400,266 (+)RGD
Celera174,846,387 - 74,914,676 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_019999   ⟹   NP_064383
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,371,769 - 74,392,851 (+)NCBI
GRCm38174,332,610 - 74,353,692 (+)NCBI
MGSCv37174,331,608 - 74,400,266 (+)RGD
Celera174,846,387 - 74,914,676 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_025580   ⟹   NP_079856
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,324,193 - 74,326,613 (+)NCBI
GRCm38174,285,034 - 74,287,454 (+)NCBI
MGSCv37174,331,608 - 74,400,266 (+)RGD
Celera174,846,387 - 74,914,676 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496167   ⟹   XP_006496230
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,323,757 - 74,392,849 (+)NCBI
GRCm38174,284,599 - 74,353,690 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_079856   ⟸   NM_025580
- Peptide Label: isoform 2
- UniProtKB: Q69ZP3 (UniProtKB/Swiss-Prot),   A0A0R4J1J1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034598   ⟸   NM_001039509
- Peptide Label: isoform 3
- UniProtKB: Q69ZP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_064383   ⟸   NM_019999
- Peptide Label: isoform 1
- UniProtKB: Q69ZP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496230   ⟸   XM_006496167
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000027370   ⟸   ENSMUST00000027370
RefSeq Acc Id: ENSMUSP00000109436   ⟸   ENSMUST00000113805
RefSeq Acc Id: ENSMUSP00000084478   ⟸   ENSMUST00000087226
RefSeq Acc Id: ENSMUSP00000084477   ⟸   ENSMUST00000087225

Promoters
RGD ID:6874054
Promoter ID:EPDNEW_M478
Type:multiple initiation site
Name:Pnkd_1
Description:Mus musculus paroxysmal nonkinesiogenic dyskinesia , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M481  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38174,285,058 - 74,285,118EPDNEW
RGD ID:6818271
Promoter ID:MM_KWN:1156
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000006462,   ENSMUST00000113805,   NM_001039509,   OTTMUST00000051564,   OTTMUST00000051566,   UC007BLU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,330,421 - 74,331,672 (+)MPROMDB
RGD ID:6818268
Promoter ID:MM_KWN:1157
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000051565
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,331,721 - 74,332,472 (+)MPROMDB
RGD ID:6874060
Promoter ID:EPDNEW_M481
Type:initiation region
Name:Pnkd_2
Description:Mus musculus paroxysmal nonkinesiogenic dyskinesia , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M478  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38174,332,660 - 74,332,720EPDNEW
RGD ID:6818266
Promoter ID:MM_KWN:1162
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:NM_019999
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,378,761 - 74,379,261 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1930773 AgrOrtholog
Ensembl Genes ENSMUSG00000026179 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000027370 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000084477 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000084478 UniProtKB/Swiss-Prot
  ENSMUSP00000109436 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027370 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000087225 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000087226 UniProtKB/Swiss-Prot
  ENSMUST00000113805 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.60.15.10 UniProtKB/Swiss-Prot
InterPro Clx_II_MBL UniProtKB/Swiss-Prot
  DUF4748 UniProtKB/TrEMBL
  HAGH_C UniProtKB/Swiss-Prot
  Hydroxyacylglutathione_Hdrlase UniProtKB/Swiss-Prot
  Metallo-B-lactamas UniProtKB/Swiss-Prot
  RibonucZ/Hydroxyglut_hydro UniProtKB/Swiss-Prot
KEGG Report mmu:56695 UniProtKB/Swiss-Prot
MGD MGI:1930773 ENTREZGENE
NCBI Gene 56695 ENTREZGENE
Pfam DUF4748 UniProtKB/TrEMBL
  HAGH_C UniProtKB/Swiss-Prot
  Lactamase_B UniProtKB/Swiss-Prot
PhenoGen Pnkd PhenoGen
SMART Lactamase_B UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56281 UniProtKB/Swiss-Prot
TIGRFAMs GSH_gloB UniProtKB/Swiss-Prot
UniProt A0A0R4J1J1 ENTREZGENE, UniProtKB/TrEMBL
  PNKD_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3TLE6 UniProtKB/Swiss-Prot
  Q6PD45 UniProtKB/Swiss-Prot
  Q8BRV8 UniProtKB/Swiss-Prot
  Q920D4 UniProtKB/Swiss-Prot
  Q9CSF5 UniProtKB/Swiss-Prot
  Q9D765 UniProtKB/Swiss-Prot
  Q9JJA3 UniProtKB/Swiss-Prot