Pnkd (paroxysmal nonkinesiogenic dyskinesia) - Rat Genome Database

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Gene: Pnkd (paroxysmal nonkinesiogenic dyskinesia) Mus musculus
Analyze
Symbol: Pnkd
Name: paroxysmal nonkinesiogenic dyskinesia
RGD ID: 1618392
MGI Page MGI
Description: Predicted to enable hydroxyacylglutathione hydrolase activity and metal ion binding activity. Acts upstream of or within modulation of chemical synaptic transmission; neuromuscular process controlling posture; and regulation of dopamine metabolic process. Located in mitochondrion. Is active in presynaptic cytosol. Is expressed in central nervous system and retina. Used to study paroxysmal nonkinesigenic dyskinesia 1. Human ortholog(s) of this gene implicated in paroxysmal nonkinesigenic dyskinesia 1. Orthologous to human PNKD (PNKD metallo-beta-lactamase domain containing).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210013N15Rik; 2810403H05Rik; AI854243; brain protein 17; Brp; Brp17; MNCb-5687; MR-1; myofibrillogenesis regulator 1; paroxysmal nonkinesiogenic dyskinesia protein; probable hydrolase PNKD; Tahccp2; trans-activated by hepatitis C virus core protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,323,757 - 74,392,851 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,324,089 - 74,392,853 (+)EnsemblGRCm39 Ensembl
GRCm38174,284,599 - 74,353,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,284,930 - 74,353,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,331,608 - 74,400,266 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,218,241 - 74,286,899 (+)NCBIMGSCv36mm8
Celera174,846,387 - 74,914,676 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP)
calcitriol  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (ISO)
dibenzofurans  (EXP)
dibutyl phthalate  (EXP,ISO)
dioxygen  (EXP)
disodium selenite  (ISO)
epoxiconazole  (EXP)
folic acid  (EXP)
fulvestrant  (ISO)
genistein  (ISO)
glafenine  (ISO)
glyphosate  (ISO)
hypochlorous acid  (EXP)
imidacloprid  (ISO)
L-methionine  (EXP)
mercury dichloride  (ISO)
methyl methanesulfonate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
Salinomycin  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP,ISO)
thiabendazole  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
tributylstannane  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (ISO)
mitochondrion  (HDA,IBA,ISO)
nucleus  (IEA)
presynaptic cytosol  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15188498   PMID:15368895   PMID:15496428  
PMID:15782199   PMID:15859324   PMID:16141072   PMID:16141073   PMID:16537572   PMID:16602821   PMID:17420335   PMID:18614015   PMID:18799693   PMID:20040360   PMID:20562862   PMID:21487022  
PMID:21677750   PMID:21873635   PMID:22214848   PMID:25730884   PMID:35165171  


Genomics

Comparative Map Data
Pnkd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,323,757 - 74,392,851 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,324,089 - 74,392,853 (+)EnsemblGRCm39 Ensembl
GRCm38174,284,599 - 74,353,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,284,930 - 74,353,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,331,608 - 74,400,266 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,218,241 - 74,286,899 (+)NCBIMGSCv36mm8
Celera174,846,387 - 74,914,676 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.53NCBI
PNKD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,270,519 - 218,346,793 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,269,651 - 218,346,793 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,135,242 - 219,211,516 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,843,359 - 218,919,760 (+)NCBINCBI36Build 36hg18NCBI36
Celera2212,901,694 - 212,978,127 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2210,988,212 - 211,064,476 (+)NCBIHuRef
CHM1_12219,141,604 - 219,218,160 (+)NCBICHM1_1
T2T-CHM13v2.02218,756,220 - 218,832,888 (+)NCBIT2T-CHM13v2.0
Pnkd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,317,757 - 83,386,263 (+)NCBIGRCr8
mRatBN7.2975,868,620 - 75,937,126 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl975,867,468 - 75,937,124 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,314,159 - 84,382,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,443,080 - 89,511,569 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0987,829,296 - 87,897,762 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,566,074 - 81,634,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,566,074 - 81,634,534 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,332,155 - 81,400,726 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,611,610 - 73,697,690 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera973,445,105 - 73,513,517 (+)NCBICelera
Cytogenetic Map9q33NCBI
Pnkd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545315,030,436 - 15,104,084 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545315,030,436 - 15,104,084 (-)NCBIChiLan1.0ChiLan1.0
PNKD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213120,902,654 - 120,979,020 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B120,917,602 - 120,993,993 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,529,775 - 105,606,207 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,127,504 - 224,204,046 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,127,504 - 224,204,046 (+)Ensemblpanpan1.1panPan2
PNKD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13724,948,763 - 25,008,542 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3724,948,932 - 25,005,144 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3725,769,014 - 25,828,461 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03724,964,913 - 25,024,609 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3724,964,994 - 25,024,608 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13724,870,239 - 24,929,662 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03724,804,494 - 24,863,959 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03724,824,128 - 24,883,632 (+)NCBIUU_Cfam_GSD_1.0
Pnkd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,457,181 - 174,522,677 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936569799,926 - 865,700 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936569799,963 - 865,462 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNKD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,387,113 - 120,410,476 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,345,541 - 120,411,648 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,367,669 - 133,370,492 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PNKD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,152,005 - 104,227,624 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,152,081 - 104,229,219 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604095,173,913 - 95,249,814 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pnkd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,674,917 - 6,761,025 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,675,702 - 6,761,133 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3102
Count of miRNA genes:670
Interacting mature miRNAs:803
Transcripts:ENSMUST00000027370, ENSMUST00000087225, ENSMUST00000087226, ENSMUST00000113805, ENSMUST00000129219, ENSMUST00000138620, ENSMUST00000152492
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse

Markers in Region
RH128628  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381787,968,795 - 87,969,000UniSTSGRCm38
GRCm38174,287,105 - 74,287,310UniSTSGRCm38
MGSCv371788,368,135 - 88,368,340UniSTSGRCm37
MGSCv37174,333,679 - 74,333,884UniSTSGRCm37
Celera1792,379,093 - 92,379,298UniSTS
Celera174,848,458 - 74,848,663UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1C3UniSTS
AU024746  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,288,651 - 74,288,767UniSTSGRCm38
MGSCv37174,335,225 - 74,335,341UniSTSGRCm37
Celera174,850,004 - 74,850,120UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH11104.13UniSTS
AA960455  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,288,362 - 74,288,581UniSTSGRCm38
MGSCv37174,334,936 - 74,335,155UniSTSGRCm37
Celera174,849,715 - 74,849,934UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH16318.51UniSTS
RH126458  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,288,255 - 74,288,504UniSTSGRCm38
MGSCv37174,334,829 - 74,335,078UniSTSGRCm37
Celera174,849,608 - 74,849,857UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH11103.82UniSTS
RH127186  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,298,884 - 74,299,094UniSTSGRCm38
MGSCv37174,345,458 - 74,345,668UniSTSGRCm37
Celera174,860,234 - 74,860,444UniSTS
Cytogenetic Map1C3UniSTS
cM Map141.0UniSTS
Whitehead/MRC_RH11098.45UniSTS
AI854243  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381787,968,945 - 87,969,066UniSTSGRCm38
GRCm38174,285,958 - 74,287,160UniSTSGRCm38
MGSCv371788,368,285 - 88,368,406UniSTSGRCm37
MGSCv37174,332,532 - 74,333,734UniSTSGRCm37
Celera1792,379,243 - 92,379,364UniSTS
Celera174,847,311 - 74,848,513UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1C3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB041609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC098570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF318058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY039041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY039042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY299972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU604861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK623847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000027370   ⟹   ENSMUSP00000027370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,204 - 74,392,843 (+)Ensembl
GRCm38.p6 Ensembl174,285,045 - 74,353,684 (+)Ensembl
Ensembl Acc Id: ENSMUST00000087225   ⟹   ENSMUSP00000084477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,371,769 - 74,392,845 (+)Ensembl
GRCm38.p6 Ensembl174,332,610 - 74,353,686 (+)Ensembl
Ensembl Acc Id: ENSMUST00000087226   ⟹   ENSMUSP00000084478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,214 - 74,392,853 (+)Ensembl
GRCm38.p6 Ensembl174,285,055 - 74,353,694 (+)Ensembl
Ensembl Acc Id: ENSMUST00000113805   ⟹   ENSMUSP00000109436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,089 - 74,326,613 (+)Ensembl
GRCm38.p6 Ensembl174,284,930 - 74,287,454 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,209 - 74,325,793 (+)Ensembl
GRCm38.p6 Ensembl174,285,050 - 74,286,634 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,213 - 74,386,725 (+)Ensembl
GRCm38.p6 Ensembl174,285,054 - 74,347,566 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152492
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,324,936 - 74,326,432 (+)Ensembl
GRCm38.p6 Ensembl174,285,777 - 74,287,273 (+)Ensembl
Ensembl Acc Id: ENSMUST00000190398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,371,822 - 74,375,420 (+)Ensembl
GRCm38.p6 Ensembl174,332,663 - 74,336,261 (+)Ensembl
RefSeq Acc Id: NM_001039509   ⟹   NP_001034598
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,324,193 - 74,392,851 (+)NCBI
GRCm38174,285,034 - 74,353,692 (+)NCBI
MGSCv37174,331,608 - 74,400,266 (+)RGD
Celera174,846,387 - 74,914,676 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_019999   ⟹   NP_064383
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,371,769 - 74,392,851 (+)NCBI
GRCm38174,332,610 - 74,353,692 (+)NCBI
MGSCv37174,331,608 - 74,400,266 (+)RGD
Celera174,846,387 - 74,914,676 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_025580   ⟹   NP_079856
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,324,193 - 74,326,613 (+)NCBI
GRCm38174,285,034 - 74,287,454 (+)NCBI
MGSCv37174,331,608 - 74,400,266 (+)RGD
Celera174,846,387 - 74,914,676 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496167   ⟹   XP_006496230
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,323,757 - 74,392,849 (+)NCBI
GRCm38174,284,599 - 74,353,690 (+)NCBI
Sequence:
RefSeq Acc Id: NP_079856   ⟸   NM_025580
- Peptide Label: isoform 2
- UniProtKB: A0A0R4J1J1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034598   ⟸   NM_001039509
- Peptide Label: isoform 3
- UniProtKB: Q9D765 (UniProtKB/Swiss-Prot),   Q9CSF5 (UniProtKB/Swiss-Prot),   Q920D4 (UniProtKB/Swiss-Prot),   Q8BRV8 (UniProtKB/Swiss-Prot),   Q6PD45 (UniProtKB/Swiss-Prot),   Q3TLE6 (UniProtKB/Swiss-Prot),   Q9JJA3 (UniProtKB/Swiss-Prot),   Q69ZP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_064383   ⟸   NM_019999
- Peptide Label: isoform 1
- UniProtKB: Q69ZP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496230   ⟸   XM_006496167
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000027370   ⟸   ENSMUST00000027370
Ensembl Acc Id: ENSMUSP00000109436   ⟸   ENSMUST00000113805
Ensembl Acc Id: ENSMUSP00000084478   ⟸   ENSMUST00000087226
Ensembl Acc Id: ENSMUSP00000084477   ⟸   ENSMUST00000087225

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q69ZP3-F1-model_v2 AlphaFold Q69ZP3 1-385 view protein structure

Promoters
RGD ID:6874054
Promoter ID:EPDNEW_M478
Type:multiple initiation site
Name:Pnkd_1
Description:Mus musculus paroxysmal nonkinesiogenic dyskinesia , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M481  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38174,285,058 - 74,285,118EPDNEW
RGD ID:6818271
Promoter ID:MM_KWN:1156
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000006462,   ENSMUST00000113805,   NM_001039509,   OTTMUST00000051564,   OTTMUST00000051566,   UC007BLU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,330,421 - 74,331,672 (+)MPROMDB
RGD ID:6818268
Promoter ID:MM_KWN:1157
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000051565
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,331,721 - 74,332,472 (+)MPROMDB
RGD ID:6874060
Promoter ID:EPDNEW_M481
Type:initiation region
Name:Pnkd_2
Description:Mus musculus paroxysmal nonkinesiogenic dyskinesia , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M478  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38174,332,660 - 74,332,720EPDNEW
RGD ID:6818266
Promoter ID:MM_KWN:1162
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:NM_019999
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,378,761 - 74,379,261 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1930773 AgrOrtholog
Ensembl Genes ENSMUSG00000026179 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027370 ENTREZGENE
  ENSMUST00000027370.13 UniProtKB/Swiss-Prot
  ENSMUST00000087225 ENTREZGENE
  ENSMUST00000087225.6 UniProtKB/Swiss-Prot
  ENSMUST00000087226.11 UniProtKB/Swiss-Prot
  ENSMUST00000113805 ENTREZGENE
  ENSMUST00000113805.8 UniProtKB/TrEMBL
Gene3D-CATH 3.60.15.10 UniProtKB/Swiss-Prot
InterPro Clx_II_MBL UniProtKB/Swiss-Prot
  DUF4748 UniProtKB/TrEMBL
  HAGH_C UniProtKB/Swiss-Prot
  Hydroxyacylglutathione_Hdrlase UniProtKB/Swiss-Prot
  Metallo-B-lactamas UniProtKB/Swiss-Prot
  RibonucZ/Hydroxyglut_hydro UniProtKB/Swiss-Prot
KEGG Report mmu:56695 UniProtKB/Swiss-Prot
MGD MGI:1930773 ENTREZGENE
NCBI Gene 56695 ENTREZGENE
PANTHER BETA LACTAMASE DOMAIN UniProtKB/Swiss-Prot
  HYDROLASE PNKD-RELATED UniProtKB/Swiss-Prot
Pfam DUF4748 UniProtKB/TrEMBL
  HAGH_C UniProtKB/Swiss-Prot
  Lactamase_B UniProtKB/Swiss-Prot
PhenoGen Pnkd PhenoGen
SMART Lactamase_B UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56281 UniProtKB/Swiss-Prot
UniProt A0A0R4J1J1 ENTREZGENE, UniProtKB/TrEMBL
  PNKD_MOUSE UniProtKB/Swiss-Prot
  Q3TLE6 ENTREZGENE
  Q69ZP3 ENTREZGENE
  Q6PD45 ENTREZGENE
  Q8BRV8 ENTREZGENE
  Q920D4 ENTREZGENE
  Q9CSF5 ENTREZGENE
  Q9D765 ENTREZGENE
  Q9JJA3 ENTREZGENE
UniProt Secondary Q3TLE6 UniProtKB/Swiss-Prot
  Q6PD45 UniProtKB/Swiss-Prot
  Q8BRV8 UniProtKB/Swiss-Prot
  Q920D4 UniProtKB/Swiss-Prot
  Q9CSF5 UniProtKB/Swiss-Prot
  Q9D765 UniProtKB/Swiss-Prot
  Q9JJA3 UniProtKB/Swiss-Prot