Fancl (Fanconi anemia, complementation group L) - Rat Genome Database

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Gene: Fancl (Fanconi anemia, complementation group L) Mus musculus
Analyze
Symbol: Fancl
Name: Fanconi anemia, complementation group L
RGD ID: 1618380
MGI Page MGI
Description: Enables ubiquitin protein ligase activity. Acts upstream of or within gamete generation and regulation of cell population proliferation. Located in nuclear envelope. Is expressed in several structures, including early embryo; gonad; heart; lung; and telencephalon ventricular layer. Used to study 46 XX gonadal dysgenesis. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group L. Orthologous to human FANCL (FA complementation group L).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 2010322C19Rik; AW554273; B230118H11Rik; E3 ubiquitin-protein ligase FANCL; fanconi anemia group L protein homolog; gcd; germ cell deficient; P; PHD finger protein 9; Phf; Phf9; Pog; proliferation of germ cells protein; RING-type E3 ubiquitin transferase FANCL
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18802  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391126,337,084 - 26,421,883 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1126,336,135 - 26,421,876 (+)EnsemblGRCm39 Ensembl
GRCm381126,387,084 - 26,471,883 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1126,386,135 - 26,471,876 (+)EnsemblGRCm38mm10GRCm38
MGSCv371126,287,084 - 26,371,876 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361126,287,084 - 26,371,876 (+)NCBIMGSCv36mm8
Celera1128,994,935 - 29,000,755 (-)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1115.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Downregulation of Fanconi anemia genes in sporadic head and neck squamous cell carcinoma. Wreesmann VB, etal., ORL J Otorhinolaryngol Relat Spec. 2007;69(4):218-25. Epub 2007 Apr 4.
Additional References at PubMed
PMID:1297335   PMID:1924340   PMID:8373945   PMID:8563166   PMID:8889548   PMID:9988212   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12417526  
PMID:12466851   PMID:12477932   PMID:12520002   PMID:12574169   PMID:12606378   PMID:12973351   PMID:14610273   PMID:15489334   PMID:15761153   PMID:15970507   PMID:16141072   PMID:16141073  
PMID:16822657   PMID:16919269   PMID:19521500   PMID:20407210   PMID:21229326   PMID:21267068   PMID:21297076   PMID:21731673   PMID:21775430   PMID:21873635   PMID:22653977   PMID:23055939  
PMID:23451117   PMID:26496610   PMID:26625197   PMID:27626380   PMID:35596251  


Genomics

Comparative Map Data
Fancl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391126,337,084 - 26,421,883 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1126,336,135 - 26,421,876 (+)EnsemblGRCm39 Ensembl
GRCm381126,387,084 - 26,471,883 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1126,386,135 - 26,471,876 (+)EnsemblGRCm38mm10GRCm38
MGSCv371126,287,084 - 26,371,876 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361126,287,084 - 26,371,876 (+)NCBIMGSCv36mm8
Celera1128,994,935 - 29,000,755 (-)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1115.85NCBI
FANCL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38258,159,243 - 58,241,380 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl258,159,243 - 58,241,410 (-)EnsemblGRCh38hg38GRCh38
GRCh37258,386,378 - 58,468,515 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36258,239,882 - 58,322,018 (-)NCBINCBI36Build 36hg18NCBI36
Build 34258,298,030 - 58,380,165NCBI
Celera258,229,548 - 58,311,691 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef258,127,658 - 58,209,806 (-)NCBIHuRef
CHM1_1258,316,641 - 58,398,744 (-)NCBICHM1_1
T2T-CHM13v2.0258,164,077 - 58,246,209 (-)NCBIT2T-CHM13v2.0
Fancl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814104,449,403 - 104,515,297 (+)NCBIGRCr8
mRatBN7.214100,249,733 - 100,317,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14100,248,875 - 100,314,255 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14104,569,751 - 104,647,120 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014105,813,840 - 105,891,206 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014102,285,669 - 102,363,036 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014110,675,306 - 110,740,880 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14110,676,090 - 110,740,317 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014110,368,478 - 110,433,487 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414107,211,448 - 107,276,828 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114107,230,315 - 107,299,602 (+)NCBI
Celera1499,184,205 - 99,249,128 (+)NCBICelera
Cytogenetic Map14q22NCBI
Fancl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542425,251,689 - 25,307,180 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542425,251,701 - 25,307,236 (+)NCBIChiLan1.0ChiLan1.0
FANCL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21268,116,184 - 68,198,583 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A68,120,135 - 68,202,535 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A58,270,620 - 58,353,001 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A59,417,463 - 59,499,863 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A59,418,265 - 59,499,496 (-)Ensemblpanpan1.1panPan2
FANCL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11058,521,480 - 58,637,352 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1058,521,552 - 58,637,482 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1058,474,427 - 58,590,338 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01059,525,256 - 59,641,260 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1059,525,317 - 59,636,793 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11059,221,915 - 59,337,621 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01059,506,524 - 59,622,215 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01059,798,922 - 59,915,100 (-)NCBIUU_Cfam_GSD_1.0
Fancl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629224,451,294 - 24,543,595 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364914,029,388 - 4,119,976 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364914,057,312 - 4,119,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FANCL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl383,337,253 - 83,436,942 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1383,136,355 - 83,436,948 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2387,936,631 - 88,021,151 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FANCL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11448,725,447 - 48,803,892 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1448,725,541 - 48,805,356 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604562,939,983 - 63,017,950 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fancl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248333,603,383 - 3,663,572 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248333,603,712 - 3,692,540 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fancl
3141 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:326
Count of miRNA genes:248
Interacting mature miRNAs:281
Transcripts:ENSMUST00000004120, ENSMUST00000109509, ENSMUST00000134445, ENSMUST00000136830, ENSMUST00000143471
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1302179Mndl2_mmandible length 2 (mouse)Not determined112590609727673304Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse

Markers in Region
AI854003  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381126,386,901 - 26,387,034UniSTSGRCm38
MGSCv371126,286,901 - 26,287,034UniSTSGRCm37
Celera1128,725,938 - 28,726,071UniSTS
Cytogenetic Map11A2-A3UniSTS
Whitehead/MRC_RH11421.01UniSTS
AW554273  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381126,471,587 - 26,471,695UniSTSGRCm38
MGSCv371126,371,587 - 26,371,695UniSTSGRCm37
Celera1128,995,116 - 28,995,224UniSTS
Cytogenetic Map11A2-A3UniSTS
Cytogenetic Map11A3.3UniSTS
Whitehead/MRC_RH11425.79UniSTS
AI447698  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381126,471,540 - 26,471,695UniSTSGRCm38
MGSCv371126,371,540 - 26,371,695UniSTSGRCm37
Celera1128,995,116 - 28,995,271UniSTS
Cytogenetic Map11A2-A3UniSTS
Cytogenetic Map11A3.3UniSTS
Whitehead/MRC_RH11426.96UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_102382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_872208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA476004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC083815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF513619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI854815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW554273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN455644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000004120   ⟹   ENSMUSP00000004120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1126,336,135 - 26,421,876 (+)Ensembl
GRCm38.p6 Ensembl1126,386,135 - 26,471,876 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109509   ⟹   ENSMUSP00000105135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1126,337,202 - 26,421,421 (+)Ensembl
GRCm38.p6 Ensembl1126,387,202 - 26,471,421 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134445   ⟹   ENSMUSP00000119873
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1126,418,335 - 26,421,430 (+)Ensembl
GRCm38.p6 Ensembl1126,468,335 - 26,471,430 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136830   ⟹   ENSMUSP00000117073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1126,337,202 - 26,372,460 (+)Ensembl
GRCm38.p6 Ensembl1126,387,202 - 26,422,460 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143471
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1126,337,202 - 26,419,124 (+)Ensembl
GRCm38.p6 Ensembl1126,387,202 - 26,469,124 (+)Ensembl
RefSeq Acc Id: NM_001277273   ⟹   NP_001264202
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391126,337,084 - 26,421,883 (+)NCBI
GRCm381126,387,084 - 26,471,883 (+)NCBI
Celera1128,994,928 - 29,000,740 (-)NCBI
Sequence:
RefSeq Acc Id: NM_025923   ⟹   NP_080199
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391126,337,084 - 26,421,883 (+)NCBI
GRCm381126,387,084 - 26,471,883 (+)NCBI
MGSCv371126,287,084 - 26,371,876 (+)RGD
Celera1128,994,928 - 29,000,740 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_102382
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391126,337,084 - 26,421,883 (+)NCBI
GRCm381126,387,084 - 26,471,883 (+)NCBI
Celera1128,994,928 - 29,000,740 (-)NCBI
Sequence:
RefSeq Acc Id: XR_872208
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391126,337,186 - 26,421,878 (+)NCBI
GRCm381126,387,163 - 26,471,878 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080199   ⟸   NM_025923
- Peptide Label: isoform 1
- UniProtKB: Q3TGY2 (UniProtKB/Swiss-Prot),   Q9D017 (UniProtKB/Swiss-Prot),   Q9CR14 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001264202   ⟸   NM_001277273
- Peptide Label: isoform 2
- UniProtKB: Q9CR14 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000105135   ⟸   ENSMUST00000109509
RefSeq Acc Id: ENSMUSP00000119873   ⟸   ENSMUST00000134445
RefSeq Acc Id: ENSMUSP00000004120   ⟸   ENSMUST00000004120
RefSeq Acc Id: ENSMUSP00000117073   ⟸   ENSMUST00000136830
Protein Domains
FANCL C-terminal   FANCL UBC-like   Fanconi anemia complex subunit FancL WD-repeat

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CR14-F1-model_v2 AlphaFold Q9CR14 1-375 view protein structure

Promoters
RGD ID:8674144
Promoter ID:EPDNEW_M15103
Type:multiple initiation site
Name:Fancl_1
Description:Mus musculus Fanconi anemia, complementation group L , transcriptvariant 3, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381126,387,202 - 26,387,262EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914280 AgrOrtholog
Ensembl Genes ENSMUSG00000004018 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000004120 ENTREZGENE
  ENSMUST00000004120.9 UniProtKB/Swiss-Prot
  ENSMUST00000109509 ENTREZGENE
  ENSMUST00000109509.8 UniProtKB/Swiss-Prot
  ENSMUST00000134445.2 UniProtKB/TrEMBL
  ENSMUST00000136830.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.10.110.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Fancl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCL_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCL_d2 UniProtKB/Swiss-Prot
  FANCL_d3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FancL_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FancL_WD-rpt_cont_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67030 UniProtKB/Swiss-Prot
MGD MGI:1914280 ENTREZGENE
NCBI Gene 67030 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE FANCL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13206 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FANCL_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCL_d2 UniProtKB/Swiss-Prot
  FANCL_d3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fancl PhenoGen
SMART FANCL_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot
UniProt D3Z6C0_MOUSE UniProtKB/TrEMBL
  F6Q7G3_MOUSE UniProtKB/TrEMBL
  FANCL_MOUSE UniProtKB/Swiss-Prot
  Q3TGY2 ENTREZGENE
  Q9CR14 ENTREZGENE
  Q9D017 ENTREZGENE
UniProt Secondary Q3TGY2 UniProtKB/Swiss-Prot
  Q9D017 UniProtKB/Swiss-Prot