4930402F06Rik (RIKEN cDNA 4930402F06 gene) - Rat Genome Database

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Gene: 4930402F06Rik (RIKEN cDNA 4930402F06 gene) Mus musculus
Analyze
No known orthologs.
Symbol: 4930402F06Rik
Name: RIKEN cDNA 4930402F06 gene
RGD ID: 1618293
MGI Page MGI
Description: Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be active in Golgi apparatus and vesicle.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC74854; RP23-458A10.2; uncharacterized protein LOC74854
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39235,265,483 - 35,287,217 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl235,265,574 - 35,287,187 (-)EnsemblGRCm39 Ensembl
GRCm38235,375,471 - 35,397,174 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl235,375,562 - 35,397,175 (-)EnsemblGRCm38mm10GRCm38
MGSCv37235,231,082 - 35,252,695 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36235,197,571 - 35,219,183 (-)NCBIMGSCv36mm8
Celera235,070,179 - 35,091,799 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map223.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IBA)
vesicle  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:32561905  


Genomics

Variants

.
Variants in 4930402F06Rik
697 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:162
Count of miRNA genes:93
Interacting mature miRNAs:96
Transcripts:ENSMUST00000113009, ENSMUST00000113010
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000113009   ⟹   ENSMUSP00000108632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl235,265,594 - 35,287,069 (-)Ensembl
GRCm38.p6 Ensembl235,375,582 - 35,397,057 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113010   ⟹   ENSMUSP00000108633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl235,265,574 - 35,287,187 (-)Ensembl
GRCm38.p6 Ensembl235,375,562 - 35,397,175 (-)Ensembl
RefSeq Acc Id: NM_001080709   ⟹   NP_001074178
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39235,265,561 - 35,287,217 (-)NCBI
GRCm38235,375,562 - 35,397,174 (-)NCBI
MGSCv37235,231,082 - 35,252,695 (-)RGD
Celera235,070,179 - 35,091,798 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001272040   ⟹   NP_001258969
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39235,265,561 - 35,287,217 (-)NCBI
GRCm38235,375,562 - 35,397,174 (-)NCBI
Celera235,070,179 - 35,091,798 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006498395   ⟹   XP_006498458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39235,265,483 - 35,280,501 (-)NCBI
GRCm38235,375,471 - 35,390,489 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001074178   ⟸   NM_001080709
- Peptide Label: isoform 1 precursor
- UniProtKB: A2AUQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258969   ⟸   NM_001272040
- Peptide Label: isoform 2
- UniProtKB: Q14BP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498458   ⟸   XM_006498395
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000108632   ⟸   ENSMUST00000113009
RefSeq Acc Id: ENSMUSP00000108633   ⟸   ENSMUST00000113010

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2AUQ8-F1-model_v2 AlphaFold A2AUQ8 1-332 view protein structure

Promoters
RGD ID:6830600
Promoter ID:MM_KWN:28888
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour
Transcripts:NM_001080709,   UC008JKJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36235,252,431 - 35,253,147 (-)MPROMDB
RGD ID:6877132
Promoter ID:EPDNEW_M2017
Type:multiple initiation site
Name:4930402F06Rik_1
Description:Mus musculus RIKEN cDNA 4930402F06 gene , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38235,397,195 - 35,397,255EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922104 AgrOrtholog
Ensembl Genes ENSMUSG00000079421 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000113009 ENTREZGENE
  ENSMUST00000113009.2 UniProtKB/TrEMBL
  ENSMUST00000113010 ENTREZGENE
  ENSMUST00000113010.9 UniProtKB/TrEMBL
InterPro Glyco_trans_6 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report mmu:74854 UniProtKB/TrEMBL
MGD MGI:1922104 ENTREZGENE
NCBI Gene 74854 ENTREZGENE
PANTHER Glyco_trans_6 UniProtKB/TrEMBL
  RIKEN CDNA 4930402F06 GENE UniProtKB/TrEMBL
Pfam Glyco_transf_6 UniProtKB/TrEMBL
PhenoGen 4930402F06Rik PhenoGen
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A2AUQ8 ENTREZGENE, UniProtKB/TrEMBL
  Q14BP7 ENTREZGENE, UniProtKB/TrEMBL