Vmn1r42 (vomeronasal 1 receptor 42) - Rat Genome Database
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Gene: Vmn1r42 (vomeronasal 1 receptor 42) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r42
Name: vomeronasal 1 receptor 42
RGD ID: 1618225
MGI Page MGI
Description: Orthologous to several human genes including VN1R17P (vomeronasal 1 receptor 17 pseudogene); INTERACTS WITH 1,2-dimethylhydrazine; dextran sulfate; pirinixic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: V1; V1RA1; V1RA3; V1ra6; vomernasal 1 receptor Vmn1r42; vomeronasal 1 receptor, A6; vomeronasal receptor 1 A1; vomeronasal receptor 1 A3; vomeronasal receptor V1RA10; vomeronasal type-1 receptor 42; vomeronasal type-1 receptor A1; vomeronasal type-1 receptor A10; vomeronasal type-1 receptor A3; vomeronasal type-1 receptor A6
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39689,821,500 - 89,822,597 (-)NCBIGRCm39mm39
GRCm39 Ensembl689,819,555 - 89,853,395 (-)Ensembl
GRCm38689,844,518 - 89,845,615 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl689,842,573 - 89,876,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv37689,794,590 - 89,795,531 (-)NCBIGRCm37mm9NCBIm37
MGSCv36689,810,100 - 89,811,041 (-)NCBImm8
Celera691,752,556 - 91,753,497 (-)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11116090   PMID:12214233   PMID:12466851   PMID:12477932   PMID:19519663   PMID:19952141   PMID:20003482   PMID:21873635   PMID:32968282  


Genomics

Position Markers
UniSTS:490656  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38689,844,596 - 89,845,537UniSTSGRCm38
MGSCv37689,794,590 - 89,795,531UniSTSGRCm37
Celera691,752,556 - 91,753,497UniSTS
Cytogenetic Map6D1UniSTS
UniSTS:494013  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,129,105 - 90,130,238UniSTSGRCm38
GRCm38689,844,518 - 89,845,615UniSTSGRCm38
MGSCv37690,079,099 - 90,080,232UniSTSGRCm37
MGSCv37689,794,512 - 89,795,609UniSTSGRCm37
Celera691,752,478 - 91,753,575UniSTS
Celera692,023,231 - 92,024,364UniSTS
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:55
Interacting mature miRNAs:55
Transcripts:ENSMUST00000089419
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000089419   ⟹   ENSMUSP00000086840
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,844,518 - 89,845,615 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226436   ⟹   ENSMUSP00000154788
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,842,573 - 89,848,051 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227279   ⟹   ENSMUSP00000154442
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,842,573 - 89,876,413 (-)Ensembl
RefSeq Acc Id: NM_053221   ⟹   NP_444451
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39689,821,500 - 89,822,597 (-)NCBI
GRCm38689,844,518 - 89,845,615 (-)ENTREZGENE
MGSCv37689,794,590 - 89,795,531 (-)RGD
Celera691,752,478 - 91,753,575 (-)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_444451   ⟸   NM_053221
- UniProtKB: Q8VBS7 (UniProtKB/Swiss-Prot),   Q05A83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000154442   ⟸   ENSMUST00000227279
RefSeq Acc Id: ENSMUSP00000086840   ⟸   ENSMUST00000089419
RefSeq Acc Id: ENSMUSP00000154788   ⟸   ENSMUST00000226436


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148511 AgrOrtholog
Ensembl Genes ENSMUSG00000068232 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000086840 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000154442 UniProtKB/Swiss-Prot
  ENSMUSP00000154788 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000089419 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000226436 UniProtKB/Swiss-Prot
  ENSMUST00000227279 UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:113848 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2148511 ENTREZGENE
NCBI Gene 113848 ENTREZGENE
PANTHER PTHR24062 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vmn1r42 PhenoGen
PRINTS VOMERONASL1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q05A83 ENTREZGENE, UniProtKB/TrEMBL
  Q8VBS7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q9EQ49 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r42  vomeronasal 1 receptor 42  V1ra6  vomeronasal 1 receptor, A6  Symbol and/or name change 5135510 APPROVED