Vmn1r42 (vomeronasal 1 receptor 42)

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Gene: Vmn1r42 (vomeronasal 1 receptor 42) Mus musculus

Analyze

No known orthologs.

Symbol:

Vmn1r42

Name:

vomeronasal 1 receptor 42

RGD ID:

1618225

MGI Page

MGI

Description:

Orthologous to several human genes including VN1R17P (vomeronasal 1 receptor 17 pseudogene); INTERACTS WITH 1,2-dimethylhydrazine; dextran sulfate; pirinixic acid.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

V1; V1RA1; V1RA3; V1ra6; vomernasal 1 receptor Vmn1r42; vomeronasal 1 receptor, A6; vomeronasal receptor 1 A1; vomeronasal receptor 1 A3; vomeronasal receptor V1RA10; vomeronasal type-1 receptor 42; vomeronasal type-1 receptor A1; vomeronasal type-1 receptor A10; vomeronasal type-1 receptor A3; vomeronasal type-1 receptor A6

RGD Orthologs

Alliance Genes

More Info

homologs ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	89,821,500 - 89,822,597 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	89,819,555 - 89,853,395 (-)	Ensembl
GRCm38	6	89,844,518 - 89,845,615 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	89,842,573 - 89,876,413 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	89,794,590 - 89,795,531 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	89,810,100 - 89,811,041 (-)	NCBI			mm8
Celera	6	91,752,556 - 91,753,497 (-)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

dextran sulfate (EXP)

pirinixic acid (EXP)

titanium dioxide (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G protein-coupled receptor signaling pathway (IEA)

response to pheromone (IEA)

sensory perception of chemical stimulus (TAS)

signal transduction (IEA)

Cellular Component

integral component of membrane (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

pheromone receptor activity (IEA)

signaling receptor activity (ISS)

References

References - curated


1.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11116090	PMID:12214233	PMID:12466851	PMID:12477932	PMID:19519663	PMID:19952141	PMID:20003482	PMID:21873635	PMID:32968282

Genomics

Position Markers

UniSTS:490656

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	89,844,596 - 89,845,537	UniSTS	GRCm38
MGSCv37	6	89,794,590 - 89,795,531	UniSTS	GRCm37
Celera	6	91,752,556 - 91,753,497	UniSTS
Cytogenetic Map	6	D1	UniSTS

UniSTS:494013

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	90,129,105 - 90,130,238	UniSTS	GRCm38
GRCm38	6	89,844,518 - 89,845,615	UniSTS	GRCm38
MGSCv37	6	90,079,099 - 90,080,232	UniSTS	GRCm37
MGSCv37	6	89,794,512 - 89,795,609	UniSTS	GRCm37
Celera	6	91,752,478 - 91,753,575	UniSTS
Celera	6	92,023,231 - 92,024,364	UniSTS
Cytogenetic Map	6	D1	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71575060	105575178	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71981024	105981170	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71981024	105981170	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73500000	134700000	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75447583	104503555	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75544356	92607450	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75544356	94225955	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75544356	94225955	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75607306	109607450	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75716503	109716697	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76463949	110464093	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77100000	90000000	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	78000000	97000000	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78629504	121115387	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81500000	102200000	Mouse
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83713869	147052561	Mouse
11251720	Ewc4_m	ethanol withdrawal and consumption 4 (mouse)					6	84122513	118122513	Mouse
1301687	Mnic2_m	macronutrient intake (mouse)			Not determined		6	86806805	113544602	Mouse
1301744	Hdlq11_m	HDL QTL 11 (mouse)			Not determined		6	87503360	121503555	Mouse
1301262	Gasa3_m	gastritis type A susceptibility locus 3 (mouse)			Not determined		6	89005405	123005603	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	55
Interacting mature miRNAs:	55
Transcripts:	ENSMUST00000089419
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB062891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB062892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC051638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF291485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY044662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC125372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000089419 ⟹ ENSMUSP00000086840

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	89,844,518 - 89,845,615 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000226436 ⟹ ENSMUSP00000154788

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	89,842,573 - 89,848,051 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000227279 ⟹ ENSMUSP00000154442

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	89,842,573 - 89,876,413 (-)	Ensembl

RefSeq Acc Id:

NM_053221 ⟹ NP_444451

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	89,821,500 - 89,822,597 (-)	NCBI
GRCm38	6	89,844,518 - 89,845,615 (-)	ENTREZGENE
MGSCv37	6	89,794,590 - 89,795,531 (-)	RGD
Celera	6	91,752,478 - 91,753,575 (-)	ENTREZGENE
cM Map	6		ENTREZGENE

Sequence:

show sequence

TGCTGAGGGGAGCAGAGTTGCCCAGGAGGGATGGGTGATATTCTGTTCTCTTCTCCTCAGTCAA
TGTTCTCACATACAATGAATAAGAACAGCATACTACATACTCATTCTATCATAGGAAAAACATT
TTTCTCTGAAATTGGCATTGGGATCTCAGGCAACAGCTTCCTTCTTCTTGTCCACATCCTAAAG
TTCATTCGTGGGCACAGGCCCAGACTCACTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACC
TACTGATGCTACTGGTCGCAGCATTCATAGCCACAGACATTTTTATCTCTCGGAGGGGCTGGGA
TGACATCATATGTAAATTCCTTGTGTACCTGTACAGAGTTTTGAGGGGTTTCTCCCTTTGCACC
ACCAGCATGTTGAGTATCCTCCAGGCCATCATTCTTAGTCCCAGAAGCTCCTGTTTAGCAAAGT
TCAAGCATATATCTCCTCATCACATATCAGGTGCCATTCTTTTCCTGAGTGTCCTCTATATGTT
AATTGGCAGTCAACTCTTGGTATCCATCATTGCCACCCCCAATTTGACCATGAATGACTTTATT
TATGTTACTCAGTCCTGCTCTATTCTACCCTTGAGTTACCTCATGCAAAGCATATATTCTACAC
TGCTAGCCATCAGGGAATTCTTTCTTATTAGTCTCATGGTCCTCTCTAATTGGTACATGGTAGC
CCTCTTAAGCATGCACAGGAAACAGACACAGCATCTTCATGGAACCAACCTGTCCCCCAAAAAA
TCCCCAGAGCAAAGTGCCACCCAGACCATCCTGATGCTCATAAGCTTCTTTTTGCTGATGACCA
TCTATGACACCATAGTCTCCTGCTCAAGAACTATGTTCCTGAATGATCCAACATCTTACTCTAT
CGAACTCTTTATAATGCACATCTATGCCACTGTCAGCCCTTTTGTGTTTATGAGCACTGAAAAA
CATATAGTTAACTTTTTGAGATCCTTGGGTAAGAGGGTGATAAATTTTAATCTTCATTGATGAG
AATATACTTAAGAAGAGACATTGTTCTGCCATCAGAACTGTCAGTCATGGCATGCTGTCTATGT
GCTTTGCCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_444451	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG42079	(Get FASTA)	NCBI Sequence Viewer
	AAI25373	(Get FASTA)	NCBI Sequence Viewer
	AAK98772	(Get FASTA)	NCBI Sequence Viewer
	BAB79209	(Get FASTA)	NCBI Sequence Viewer
	BAB79210	(Get FASTA)	NCBI Sequence Viewer
	EDK99271	(Get FASTA)	NCBI Sequence Viewer
	Q8VBS7	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_444451 ⟸ NM_053221

- UniProtKB:

Q8VBS7 (UniProtKB/Swiss-Prot), Q05A83 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGDILFSSPQSMFSHTMNKNSILHTHSIIGKTFFSEIGIGISGNSFLLLVHILKFIRGHRPRLT
DLPIGLLSLIHLLMLLVAAFIATDIFISRRGWDDIICKFLVYLYRVLRGFSLCTTSMLSILQAI
ILSPRSSCLAKFKHISPHHISGAILFLSVLYMLIGSQLLVSIIATPNLTMNDFIYVTQSCSILP
LSYLMQSIYSTLLAIREFFLISLMVLSNWYMVALLSMHRKQTQHLHGTNLSPKKSPEQSATQTI
LMLISFFLLMTIYDTIVSCSRTMFLNDPTSYSIELFIMHIYATVSPFVFMSTEKHIVNFLRSLG
KRVINFNLH

hide sequence

RefSeq Acc Id:

ENSMUSP00000154442 ⟸ ENSMUST00000227279

RefSeq Acc Id:

ENSMUSP00000086840 ⟸ ENSMUST00000089419

RefSeq Acc Id:

ENSMUSP00000154788 ⟸ ENSMUST00000226436

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2148511	AgrOrtholog
Ensembl Genes	ENSMUSG00000068232	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000086840	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000154442	UniProtKB/Swiss-Prot
	ENSMUSP00000154788	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000089419	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000226436	UniProtKB/Swiss-Prot
	ENSMUST00000227279	UniProtKB/Swiss-Prot
InterPro	GPCR_Rhodpsn_7TM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Vmron_rcpt_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:113848	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:2148511	ENTREZGENE
NCBI Gene	113848	ENTREZGENE
PANTHER	PTHR24062	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	V1R	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Vmn1r42	PhenoGen
PRINTS	VOMERONASL1R	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	Q05A83	ENTREZGENE, UniProtKB/TrEMBL
	Q8VBS7	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q9EQ49	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-27	Vmn1r42	vomeronasal 1 receptor 42	V1ra6	vomeronasal 1 receptor, A6	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)