V1ra8 (vomeronasal 1 receptor, A8) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: V1ra8 (vomeronasal 1 receptor, A8) Mus musculus
Analyze
No known orthologs.
Symbol: V1ra8
Name: vomeronasal 1 receptor, A8
RGD ID: 1618223
MGI Page MGI
Description: Orthologous to human VN1R17P (vomeronasal 1 receptor 17 pseudogene); INTERACTS WITH 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl; dextran sulfate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Vmn1r; Vmn1r-ps33; vomeronasal 1 receptor, pseudogene 33; vomeronasal type-1 receptor A8
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,179,799 - 90,180,638 (+)NCBIGRCm39mm39
GRCm39 Ensembl690,179,768 - 90,182,848 (+)Ensembl
GRCm38690,202,817 - 90,203,656 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,202,786 - 90,205,866 (+)EnsemblGRCm38mm10GRCm38
MGSCv37690,152,811 - 90,153,650 (+)NCBIGRCm37mm9NCBIm37
MGSCv36690,168,321 - 90,169,160 (+)NCBImm8
Celera692,096,966 - 92,097,805 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11116090   PMID:11802169   PMID:12214233   PMID:12477932   PMID:19952141   PMID:20003482   PMID:21873635   PMID:27568566  


Genomics

Position Markers
UniSTS:489262  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,202,817 - 90,203,748UniSTSGRCm38
GRCm38690,178,716 - 90,179,645UniSTSGRCm38
MGSCv37690,152,811 - 90,153,742UniSTSGRCm37
MGSCv37690,128,710 - 90,129,639UniSTSGRCm37
Celera692,072,835 - 92,073,764UniSTS
Celera692,096,966 - 92,097,897UniSTS
Cytogenetic Map6D1UniSTS
UniSTS:491536  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,202,793 - 90,203,682UniSTSGRCm38
GRCm38690,178,692 - 90,179,580UniSTSGRCm38
MGSCv37690,152,787 - 90,153,676UniSTSGRCm37
MGSCv37690,128,686 - 90,129,574UniSTSGRCm37
Celera692,072,811 - 92,073,699UniSTS
Celera692,096,942 - 92,097,831UniSTS
Cytogenetic Map6D1UniSTS
UniSTS:494231  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,202,728 - 90,203,801UniSTSGRCm38
GRCm38690,178,627 - 90,179,697UniSTSGRCm38
MGSCv37690,152,722 - 90,153,795UniSTSGRCm37
MGSCv37690,128,621 - 90,129,691UniSTSGRCm37
Celera692,072,746 - 92,073,816UniSTS
Celera692,096,877 - 92,097,950UniSTS
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:84
Interacting mature miRNAs:88
Transcripts:ENSMUST00000078371
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000078371   ⟹   ENSMUSP00000077479
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,202,786 - 90,205,866 (+)Ensembl
RefSeq Acc Id: NM_053223   ⟹   NP_444453
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,179,799 - 90,180,638 (+)NCBI
GRCm38690,202,817 - 90,203,656 (+)ENTREZGENE
MGSCv37690,152,811 - 90,153,650 (+)RGD
Celera692,096,966 - 92,097,805 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_444453 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG42081 (Get FASTA)   NCBI Sequence Viewer  
  AAI38393 (Get FASTA)   NCBI Sequence Viewer  
  AAI38395 (Get FASTA)   NCBI Sequence Viewer  
  Q9EQ48 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_444453   ⟸   NM_053223
- UniProtKB: Q9EQ48 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000077479   ⟸   ENSMUST00000078371


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148513 AgrOrtholog
Ensembl Genes ENSMUSG00000062546 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000077479 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000078371 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Vmron_rcpt_1 UniProtKB/Swiss-Prot
KEGG Report mmu:113850 UniProtKB/Swiss-Prot
MGD MGI:2148513 ENTREZGENE
NCBI Gene 113850 ENTREZGENE
PANTHER PTHR24062 UniProtKB/Swiss-Prot
Pfam V1R UniProtKB/Swiss-Prot
PhenoGen V1ra8 PhenoGen
PRINTS VOMERONASL1R UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
UniProt Q9EQ48 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B9EHS8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 V1ra8  vomeronasal 1 receptor, A8  Vmn1r-ps33  vomeronasal 1 receptor, pseudogene 33  Data Merged 737654 PROVISIONAL