Vmn1r54 (vomeronasal 1 receptor 54) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Vmn1r54 (vomeronasal 1 receptor 54) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r54
Name: vomeronasal 1 receptor 54
RGD ID: 1618222
MGI Page MGI
Description: Orthologous to several human genes including VN1R17P (vomeronasal 1 receptor 17 pseudogene); INTERACTS WITH 1,2-dichloroethane; dichloroacetic acid; tetrachloroethene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: pheromone receptor VN7; V; V1; V1ra9; VN7; vomernasal 1 receptor Vmn1r54; vomeronasal 1 receptor, A9; vomeronasal receptor 7; vomeronasal type 1 receptor A9; vomeronasal type-1 receptor 54; vomeronasal type-1 receptor A9
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,246,088 - 90,247,035 (+)NCBIGRCm39mm39
GRCm39 Ensembl690,223,282 - 90,248,195 (+)Ensembl
GRCm38690,269,106 - 90,270,053 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,246,300 - 90,271,213 (+)EnsemblGRCm38mm10GRCm38
MGSCv37690,219,100 - 90,220,047 (+)NCBIGRCm37mm9NCBIm37
MGSCv36690,234,610 - 90,235,557 (+)NCBImm8
Celera692,162,757 - 92,163,704 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11116090   PMID:11752409   PMID:12214233   PMID:12466851   PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

Position Markers
UniSTS:493167  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,269,106 - 90,270,053UniSTSGRCm38
MGSCv37690,219,100 - 90,220,047UniSTSGRCm37
Celera692,162,757 - 92,163,704UniSTS
Cytogenetic Map6D1UniSTS
UniSTS:495549  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,269,076 - 90,270,081UniSTSGRCm38
MGSCv37690,219,070 - 90,220,075UniSTSGRCm37
Celera692,162,727 - 92,163,732UniSTS
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:95
Interacting mature miRNAs:98
Transcripts:ENSMUST00000058039
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC165969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF129005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000058039   ⟹   ENSMUSP00000063052
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,269,106 - 90,270,053 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226921   ⟹   ENSMUSP00000154354
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,246,300 - 90,271,213 (+)Ensembl
RefSeq Acc Id: NM_053224   ⟹   NP_444454
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,246,088 - 90,247,035 (+)NCBI
GRCm38690,269,106 - 90,270,053 (+)ENTREZGENE
MGSCv37690,219,100 - 90,220,047 (+)RGD
Celera692,162,757 - 92,163,704 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_444454 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG42082 (Get FASTA)   NCBI Sequence Viewer  
  AAG43252 (Get FASTA)   NCBI Sequence Viewer  
  AEE99789 (Get FASTA)   NCBI Sequence Viewer  
  AEE99790 (Get FASTA)   NCBI Sequence Viewer  
  AEE99791 (Get FASTA)   NCBI Sequence Viewer  
  AEE99792 (Get FASTA)   NCBI Sequence Viewer  
  AEE99793 (Get FASTA)   NCBI Sequence Viewer  
  AEE99794 (Get FASTA)   NCBI Sequence Viewer  
  AEE99795 (Get FASTA)   NCBI Sequence Viewer  
  AEE99796 (Get FASTA)   NCBI Sequence Viewer  
  AEE99797 (Get FASTA)   NCBI Sequence Viewer  
  AEE99798 (Get FASTA)   NCBI Sequence Viewer  
  AEE99799 (Get FASTA)   NCBI Sequence Viewer  
  AEE99800 (Get FASTA)   NCBI Sequence Viewer  
  AEE99801 (Get FASTA)   NCBI Sequence Viewer  
  AEE99802 (Get FASTA)   NCBI Sequence Viewer  
  AEE99803 (Get FASTA)   NCBI Sequence Viewer  
  AEE99804 (Get FASTA)   NCBI Sequence Viewer  
  AEE99805 (Get FASTA)   NCBI Sequence Viewer  
  AEE99806 (Get FASTA)   NCBI Sequence Viewer  
  AEE99807 (Get FASTA)   NCBI Sequence Viewer  
  AEE99808 (Get FASTA)   NCBI Sequence Viewer  
  AEE99809 (Get FASTA)   NCBI Sequence Viewer  
  AEE99810 (Get FASTA)   NCBI Sequence Viewer  
  AEE99811 (Get FASTA)   NCBI Sequence Viewer  
  AEE99812 (Get FASTA)   NCBI Sequence Viewer  
  AEE99813 (Get FASTA)   NCBI Sequence Viewer  
  EDK99280 (Get FASTA)   NCBI Sequence Viewer  
  Q9EPB8 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_444454   ⟸   NM_053224
- UniProtKB: Q9EPB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000154354   ⟸   ENSMUST00000226921
RefSeq Acc Id: ENSMUSP00000063052   ⟸   ENSMUST00000058039


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148514 AgrOrtholog
Ensembl Genes ENSMUSG00000047203 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000063052 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000154354 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000058039 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000226921 UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Vmron_rcpt_1 UniProtKB/Swiss-Prot
KEGG Report mmu:113851 UniProtKB/Swiss-Prot
MGD MGI:2148514 ENTREZGENE
NCBI Gene 113851 ENTREZGENE
PANTHER PTHR24062 UniProtKB/Swiss-Prot
Pfam V1R UniProtKB/Swiss-Prot
PhenoGen Vmn1r54 PhenoGen
PRINTS VOMERONASL1R UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
UniProt Q9EPB8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r54  vomeronasal 1 receptor 54  V1ra9  vomeronasal 1 receptor, A9  Symbol and/or name change 5135510 APPROVED