Vmn1r50 (vomeronasal 1 receptor 50) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Vmn1r50 (vomeronasal 1 receptor 50) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r50
Name: vomeronasal 1 receptor 50
RGD ID: 1618221
MGI Page MGI
Description: Orthologous to several human genes including VN1R17P (vomeronasal 1 receptor 17 pseudogene); INTERACTS WITH 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: MGC130072; pheromone receptor VN2; V; V1r; V1RA5; V1rb1; VN2; vomernasal 1 receptor Vmn1r50; vomeronasal 1 receptor, B1; vomeronasal receptor 1 A5; vomeronasal receptor 2; vomeronasal type 1 receptor B1; vomeronasal type-1 receptor 50; vomeronasal type-1 receptor A5; vomeronasal type-1 receptor B1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,084,257 - 90,085,189 (+)NCBIGRCm39mm39
GRCm39 Ensembl690,078,412 - 90,086,091 (+)Ensembl
GRCm38690,107,275 - 90,108,207 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,101,430 - 90,109,109 (+)EnsemblGRCm38mm10GRCm38
MGSCv37690,057,269 - 90,058,201 (+)NCBIGRCm37mm9NCBIm37
MGSCv36690,072,779 - 90,073,711 (+)NCBImm8
Celera692,001,396 - 92,002,328 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10219242   PMID:11116090   PMID:11752409   PMID:12214233   PMID:12466851   PMID:12477932   PMID:15489334   PMID:15618518   PMID:16602821   PMID:16731509   PMID:18287559   PMID:19952141  
PMID:20003482   PMID:21752992   PMID:21873635  


Genomics

Position Markers
UniSTS:490616  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,107,275 - 90,108,207UniSTSGRCm38
MGSCv37690,057,269 - 90,058,201UniSTSGRCm37
Celera692,001,396 - 92,002,328UniSTS
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:49
Interacting mature miRNAs:50
Transcripts:ENSMUST00000081706
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB062902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF129005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000081706   ⟹   ENSMUSP00000080407
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,107,275 - 90,108,207 (+)Ensembl
RefSeq Acc Id: ENSMUST00000089417   ⟹   ENSMUSP00000100705
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,101,430 - 90,109,109 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226577   ⟹   ENSMUSP00000154560
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,101,430 - 90,109,109 (+)Ensembl
RefSeq Acc Id: NM_053225   ⟹   NP_444455
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,084,257 - 90,085,189 (+)NCBI
GRCm38690,107,275 - 90,108,207 (+)ENTREZGENE
MGSCv37690,057,269 - 90,058,201 (+)RGD
Celera692,001,396 - 92,002,328 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_444455 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG42083 (Get FASTA)   NCBI Sequence Viewer  
  AAG43248 (Get FASTA)   NCBI Sequence Viewer  
  AAI07184 (Get FASTA)   NCBI Sequence Viewer  
  AAI15707 (Get FASTA)   NCBI Sequence Viewer  
  AEE99814 (Get FASTA)   NCBI Sequence Viewer  
  AEE99815 (Get FASTA)   NCBI Sequence Viewer  
  AEE99816 (Get FASTA)   NCBI Sequence Viewer  
  AEE99817 (Get FASTA)   NCBI Sequence Viewer  
  AEE99818 (Get FASTA)   NCBI Sequence Viewer  
  AEE99819 (Get FASTA)   NCBI Sequence Viewer  
  AEE99820 (Get FASTA)   NCBI Sequence Viewer  
  AEE99821 (Get FASTA)   NCBI Sequence Viewer  
  AEE99822 (Get FASTA)   NCBI Sequence Viewer  
  AEE99823 (Get FASTA)   NCBI Sequence Viewer  
  AEE99824 (Get FASTA)   NCBI Sequence Viewer  
  AEE99825 (Get FASTA)   NCBI Sequence Viewer  
  AEE99826 (Get FASTA)   NCBI Sequence Viewer  
  AEE99827 (Get FASTA)   NCBI Sequence Viewer  
  AEE99828 (Get FASTA)   NCBI Sequence Viewer  
  AEE99829 (Get FASTA)   NCBI Sequence Viewer  
  AEE99830 (Get FASTA)   NCBI Sequence Viewer  
  AEE99831 (Get FASTA)   NCBI Sequence Viewer  
  AEE99832 (Get FASTA)   NCBI Sequence Viewer  
  AEE99833 (Get FASTA)   NCBI Sequence Viewer  
  BAB79219 (Get FASTA)   NCBI Sequence Viewer  
  EDK99276 (Get FASTA)   NCBI Sequence Viewer  
  Q9EP51 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_444455   ⟸   NM_053225
- UniProtKB: Q9EP51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000080407   ⟸   ENSMUST00000081706
RefSeq Acc Id: ENSMUSP00000100705   ⟸   ENSMUST00000089417
RefSeq Acc Id: ENSMUSP00000154560   ⟸   ENSMUST00000226577
Protein Domains
G_PROTEIN_RECEP_F1_2


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148515 AgrOrtholog
Ensembl Genes ENSMUSG00000094553 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000080407 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000100705 UniProtKB/Swiss-Prot
  ENSMUSP00000154560 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000081706 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000089417 UniProtKB/Swiss-Prot
  ENSMUST00000226577 UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:113852 UniProtKB/Swiss-Prot
MGD MGI:2148515 ENTREZGENE
NCBI Gene 113852 ENTREZGENE
PANTHER PTHR24062 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vmn1r50 PhenoGen
PRINTS VOMERONASL1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q1LZM7_MOUSE UniProtKB/TrEMBL
  Q9EP51 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8VIC3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r50  vomeronasal 1 receptor 50  V1rb1  vomeronasal 1 receptor, B1  Symbol and/or name change 5135510 APPROVED