Vmn1r53 (vomeronasal 1 receptor 53) - Rat Genome Database
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Gene: Vmn1r53 (vomeronasal 1 receptor 53) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r53
Name: vomeronasal 1 receptor 53
RGD ID: 1618220
MGI Page MGI
Description: Orthologous to human VN1R17P (vomeronasal 1 receptor 17 pseudogene); INTERACTS WITH genistein.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: pheromone receptor VN5; V; V1r; V1rb3; VN5; vomernasal 1 receptor Vmn1r53; vomeronasal 1 receptor, B3; vomeronasal receptor 5; vomeronasal type 1 receptor B3; vomeronasal type-1 receptor 53; vomeronasal type-1 receptor B3
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,200,299 - 90,201,420 (-)NCBIGRCm39mm39
GRCm39 Ensembl690,200,299 - 90,201,420 (-)Ensembl
GRCm38690,223,317 - 90,224,438 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,223,317 - 90,224,438 (-)EnsemblGRCm38mm10GRCm38
MGSCv37690,173,311 - 90,174,432 (-)NCBIGRCm37mm9NCBIm37
MGSCv36690,188,912 - 90,189,844 (-)NCBImm8
Celera692,112,618 - 92,113,739 (-)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
genistein  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11116090   PMID:11752409   PMID:12214233   PMID:12466851   PMID:12477932   PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

Position Markers
UniSTS:493163  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,223,408 - 90,224,340UniSTSGRCm38
GRCm38689,893,274 - 89,894,206UniSTSGRCm38
MGSCv37690,173,402 - 90,174,334UniSTSGRCm37
MGSCv37689,843,268 - 89,844,200UniSTSGRCm37
Celera691,801,211 - 91,802,143UniSTS
Celera692,112,709 - 92,113,641UniSTS
Cytogenetic Map6D1UniSTS
UniSTS:494014  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,223,317 - 90,224,438UniSTSGRCm38
MGSCv37690,173,311 - 90,174,432UniSTSGRCm37
Celera692,112,618 - 92,113,739UniSTS
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:133
Interacting mature miRNAs:141
Transcripts:ENSMUST00000076086
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC165969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF129005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000076086   ⟹   ENSMUSP00000075455
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,223,317 - 90,224,438 (-)Ensembl
RefSeq Acc Id: NM_053226   ⟹   NP_444456
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,200,299 - 90,201,420 (-)NCBI
GRCm38690,223,317 - 90,224,438 (-)ENTREZGENE
MGSCv37690,173,311 - 90,174,432 (-)RGD
Celera692,112,618 - 92,113,739 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_444456 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG42085 (Get FASTA)   NCBI Sequence Viewer  
  AAG43251 (Get FASTA)   NCBI Sequence Viewer  
  AAI25606 (Get FASTA)   NCBI Sequence Viewer  
  AAI32003 (Get FASTA)   NCBI Sequence Viewer  
  AEE99861 (Get FASTA)   NCBI Sequence Viewer  
  AEE99862 (Get FASTA)   NCBI Sequence Viewer  
  AEE99863 (Get FASTA)   NCBI Sequence Viewer  
  AEE99864 (Get FASTA)   NCBI Sequence Viewer  
  AEE99865 (Get FASTA)   NCBI Sequence Viewer  
  AEE99866 (Get FASTA)   NCBI Sequence Viewer  
  AEE99867 (Get FASTA)   NCBI Sequence Viewer  
  AEE99868 (Get FASTA)   NCBI Sequence Viewer  
  AEE99869 (Get FASTA)   NCBI Sequence Viewer  
  AEE99870 (Get FASTA)   NCBI Sequence Viewer  
  AEE99871 (Get FASTA)   NCBI Sequence Viewer  
  AEE99872 (Get FASTA)   NCBI Sequence Viewer  
  AEE99873 (Get FASTA)   NCBI Sequence Viewer  
  AEE99874 (Get FASTA)   NCBI Sequence Viewer  
  AEE99875 (Get FASTA)   NCBI Sequence Viewer  
  AEE99876 (Get FASTA)   NCBI Sequence Viewer  
  AEE99877 (Get FASTA)   NCBI Sequence Viewer  
  AEE99878 (Get FASTA)   NCBI Sequence Viewer  
  AEE99879 (Get FASTA)   NCBI Sequence Viewer  
  AEE99880 (Get FASTA)   NCBI Sequence Viewer  
  AEE99881 (Get FASTA)   NCBI Sequence Viewer  
  AEE99882 (Get FASTA)   NCBI Sequence Viewer  
  AEE99883 (Get FASTA)   NCBI Sequence Viewer  
  AEE99884 (Get FASTA)   NCBI Sequence Viewer  
  AEE99885 (Get FASTA)   NCBI Sequence Viewer  
  AEE99886 (Get FASTA)   NCBI Sequence Viewer  
  AEE99887 (Get FASTA)   NCBI Sequence Viewer  
  AEE99888 (Get FASTA)   NCBI Sequence Viewer  
  Q9EP93 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_444456   ⟸   NM_053226
- UniProtKB: A2RS76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000075455   ⟸   ENSMUST00000076086
Protein Domains
G_PROTEIN_RECEP_F1_2


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148516 AgrOrtholog
Ensembl Genes ENSMUSG00000057697 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000075455 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000076086 ENTREZGENE, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:113853 UniProtKB/TrEMBL
MGD MGI:2148516 ENTREZGENE
NCBI Gene 113853 ENTREZGENE
PANTHER PTHR24062 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vmn1r53 PhenoGen
PRINTS VOMERONASL1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2RS76 ENTREZGENE, UniProtKB/TrEMBL
  Q9EP93 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q059M1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r53  vomeronasal 1 receptor 53  V1rb3  vomeronasal 1 receptor, B3  Symbol and/or name change 5135510 APPROVED