Slu7 (SLU7 splicing factor homolog (S. cerevisiae)) - Rat Genome Database

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Gene: Slu7 (SLU7 splicing factor homolog (S. cerevisiae)) Mus musculus
Analyze
Symbol: Slu7
Name: SLU7 splicing factor homolog (S. cerevisiae)
RGD ID: 1618204
MGI Page MGI
Description: Predicted to enable pre-mRNA 3'-splice site binding activity; second spliceosomal transesterification activity; and zinc ion binding activity. Predicted to be involved in cellular response to heat; intracellular protein transport; and mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytosol and nuclear speck. Predicted to be part of catalytic step 2 spliceosome and small nuclear ribonucleoprotein complex. Is expressed in eye; heart; islets of Langerhans; and lung epithelium. Orthologous to human SLU7 (SLU7 homolog, splicing factor).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AU018913; D11Ertd730; D11Ertd730e; D3Bwg0878e; MGC31026; pre-mRNA-splicing factor SLU7; RP23-26M1.8; step II splicing factor SLU7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,324,550 - 43,338,809 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,324,571 - 43,338,808 (+)EnsemblGRCm39 Ensembl
GRCm381143,433,726 - 43,447,982 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,433,744 - 43,447,981 (+)EnsemblGRCm38mm10GRCm38
MGSCv371143,247,233 - 43,261,483 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361143,277,154 - 43,291,404 (+)NCBIMGSCv36mm8
Celera1148,062,245 - 48,076,494 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.68NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. A day in the life of the spliceosome. Matera AG and Wang Z, Nat Rev Mol Cell Biol. 2014 Feb;15(2):108-21. doi: 10.1038/nrm3742.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9371744   PMID:10349636   PMID:10647016   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11238888   PMID:11544199   PMID:12466851  
PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17804646   PMID:21677750   PMID:21873635   PMID:22922362   PMID:24586484   PMID:24865429   PMID:29870742   PMID:30973865  
PMID:32325033   PMID:34170569  


Genomics

Comparative Map Data
Slu7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,324,550 - 43,338,809 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,324,571 - 43,338,808 (+)EnsemblGRCm39 Ensembl
GRCm381143,433,726 - 43,447,982 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,433,744 - 43,447,981 (+)EnsemblGRCm38mm10GRCm38
MGSCv371143,247,233 - 43,261,483 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361143,277,154 - 43,291,404 (+)NCBIMGSCv36mm8
Celera1148,062,245 - 48,076,494 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.68NCBI
SLU7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385160,401,641 - 160,419,081 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5160,401,641 - 160,421,711 (-)EnsemblGRCh38hg38GRCh38
GRCh375159,828,648 - 159,846,088 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365159,761,226 - 159,778,746 (-)NCBINCBI36Build 36hg18NCBI36
Celera5155,861,110 - 155,878,652 (-)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5154,922,340 - 154,939,594 (-)NCBIHuRef
CHM1_15159,261,546 - 159,279,087 (-)NCBICHM1_1
T2T-CHM13v2.05160,930,130 - 160,947,593 (-)NCBIT2T-CHM13v2.0
Slu7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,406,908 - 28,425,253 (+)NCBIGRCr8
mRatBN7.21027,908,325 - 27,923,784 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1027,908,396 - 27,923,349 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1032,668,805 - 32,683,754 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0101,207,188 - 1,222,137 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01027,639,304 - 27,654,247 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,029,556 - 29,044,919 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,029,590 - 29,044,583 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01028,871,433 - 28,886,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41028,536,630 - 28,551,427 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11028,537,678 - 28,550,757 (+)NCBI
Celera1027,401,434 - 27,416,356 (+)NCBICelera
Cytogenetic Map10q21NCBI
Slu7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540814,267,369 - 14,288,213 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540814,268,958 - 14,288,114 (-)NCBIChiLan1.0ChiLan1.0
SLU7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24155,587,032 - 155,604,972 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15153,726,578 - 153,744,518 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05155,792,494 - 155,810,474 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15162,486,743 - 162,504,316 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5162,486,743 - 162,504,316 (-)Ensemblpanpan1.1panPan2
SLU7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1450,314,063 - 50,328,999 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl450,314,086 - 50,327,733 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha450,209,676 - 50,224,618 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0450,749,579 - 50,764,516 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl450,748,743 - 50,764,508 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1450,557,999 - 50,572,951 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0450,681,739 - 50,696,726 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0451,202,029 - 51,216,993 (+)NCBIUU_Cfam_GSD_1.0
Slu7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213104,723,568 - 104,730,569 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365153,168,838 - 3,178,588 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365153,172,962 - 3,179,915 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLU7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1663,118,733 - 63,136,640 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11663,118,426 - 63,145,655 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21668,469,349 - 68,507,713 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLU7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12362,761,466 - 62,778,613 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2362,764,335 - 62,778,910 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603414,825,845 - 14,843,018 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slu7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473329,146,579 - 29,162,074 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473329,147,329 - 29,161,687 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slu7
378 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1514
Count of miRNA genes:576
Interacting mature miRNAs:692
Transcripts:ENSMUST00000020681, ENSMUST00000126128, ENSMUST00000136541, ENSMUST00000149402, ENSMUST00000151880, ENSMUST00000178622
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
10043922Alcw9_malcohol withdrawal 9 (mouse)Not determined113557861644065931Mouse
1301718Pbw3_mpentobarbital withdrawal QTL 3 (mouse)Not determined113557861644065931Mouse
1558769Zolw1_mzolpidem withdrawal 1 (mouse)Not determined113557861644065931Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse

Markers in Region
BE200474  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381143,438,174 - 43,438,262UniSTSGRCm38
MGSCv371143,251,676 - 43,251,764UniSTSGRCm37
Celera1148,066,687 - 48,066,775UniSTS
Cytogenetic Map11A5-B1.1UniSTS
Whitehead/MRC_RH11587.89UniSTS
BB260036  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381143,447,789 - 43,447,921UniSTSGRCm38
MGSCv371143,261,291 - 43,261,423UniSTSGRCm37
Celera1148,076,302 - 48,076,434UniSTS
Cytogenetic Map11A5-B1.1UniSTS
Whitehead/MRC_RH11591.44UniSTS
RH136514  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381143,446,566 - 43,446,769UniSTSGRCm38
MGSCv371143,260,068 - 43,260,271UniSTSGRCm37
Celera1148,075,079 - 48,075,282UniSTS
Cytogenetic Map11A5-B1.1UniSTS
01.MMHAP59FRA7.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381143,433,745 - 43,433,901UniSTSGRCm38
MGSCv371143,247,247 - 43,247,403UniSTSGRCm37
Celera1148,062,259 - 48,062,415UniSTS
Cytogenetic Map11A5-B1.1UniSTS
Whitehead_YAC11 UniSTS
Slu7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A5-B1.1UniSTS
D11Ertd730e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381143,446,823 - 43,447,032UniSTSGRCm38
MGSCv371143,260,325 - 43,260,534UniSTSGRCm37
Celera1148,075,336 - 48,075,545UniSTS
Cytogenetic Map11A5-B1.1UniSTS
cM Map1124.0UniSTS
D3Bwg0878e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A5-B1.1UniSTS
cM Map333.0UniSTS
cM Map11 UniSTS
cM Map3 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_148673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK029117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL670472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC106099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY243619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020681   ⟹   ENSMUSP00000020681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,324,586 - 43,338,808 (+)Ensembl
GRCm38.p6 Ensembl1143,433,759 - 43,447,981 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126128   ⟹   ENSMUSP00000122142
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,324,571 - 43,329,103 (+)Ensembl
GRCm38.p6 Ensembl1143,433,744 - 43,438,276 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,332,234 - 43,333,459 (+)Ensembl
GRCm38.p6 Ensembl1143,441,407 - 43,442,632 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149402
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,328,202 - 43,330,036 (+)Ensembl
GRCm38.p6 Ensembl1143,437,375 - 43,439,209 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151880   ⟹   ENSMUSP00000116609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,324,571 - 43,336,212 (+)Ensembl
GRCm38.p6 Ensembl1143,433,744 - 43,445,385 (+)Ensembl
RefSeq Acc Id: ENSMUST00000178622   ⟹   ENSMUSP00000137281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1143,328,170 - 43,338,808 (+)Ensembl
GRCm38.p6 Ensembl1143,437,343 - 43,447,981 (+)Ensembl
RefSeq Acc Id: NM_148673   ⟹   NP_683514
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,324,558 - 43,338,808 (+)NCBI
GRCm381143,433,731 - 43,447,981 (+)NCBI
MGSCv371143,247,233 - 43,261,483 (+)RGD
Celera1148,062,245 - 48,076,494 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_198936   ⟹   NP_945174
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,324,558 - 43,338,808 (+)NCBI
GRCm381143,433,731 - 43,447,981 (+)NCBI
MGSCv371143,247,233 - 43,261,483 (+)RGD
Celera1148,062,245 - 48,076,494 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248823   ⟹   XP_011247125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,324,550 - 43,338,809 (+)NCBI
GRCm381143,433,726 - 43,447,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156451   ⟹   XP_036012344
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391143,328,202 - 43,338,809 (+)NCBI
Sequence:
RefSeq Acc Id: NP_683514   ⟸   NM_148673
- UniProtKB: Q8R5C1 (UniProtKB/Swiss-Prot),   Q8BXD5 (UniProtKB/Swiss-Prot),   Q8BL59 (UniProtKB/Swiss-Prot),   Q6P923 (UniProtKB/Swiss-Prot),   Q63ZX3 (UniProtKB/Swiss-Prot),   Q5SRU1 (UniProtKB/Swiss-Prot),   Q3KQQ3 (UniProtKB/Swiss-Prot),   Q91YV6 (UniProtKB/Swiss-Prot),   Q8BHJ9 (UniProtKB/Swiss-Prot),   Z4YM25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_945174   ⟸   NM_198936
- UniProtKB: Q8R5C1 (UniProtKB/Swiss-Prot),   Q8BXD5 (UniProtKB/Swiss-Prot),   Q8BL59 (UniProtKB/Swiss-Prot),   Q6P923 (UniProtKB/Swiss-Prot),   Q63ZX3 (UniProtKB/Swiss-Prot),   Q5SRU1 (UniProtKB/Swiss-Prot),   Q3KQQ3 (UniProtKB/Swiss-Prot),   Q91YV6 (UniProtKB/Swiss-Prot),   Q8BHJ9 (UniProtKB/Swiss-Prot),   Z4YM25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247125   ⟸   XM_011248823
- Peptide Label: isoform X1
- UniProtKB: Q8R5C1 (UniProtKB/Swiss-Prot),   Q8BXD5 (UniProtKB/Swiss-Prot),   Q8BL59 (UniProtKB/Swiss-Prot),   Q6P923 (UniProtKB/Swiss-Prot),   Q63ZX3 (UniProtKB/Swiss-Prot),   Q5SRU1 (UniProtKB/Swiss-Prot),   Q3KQQ3 (UniProtKB/Swiss-Prot),   Q91YV6 (UniProtKB/Swiss-Prot),   Q8BHJ9 (UniProtKB/Swiss-Prot),   Z4YM25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137281   ⟸   ENSMUST00000178622
RefSeq Acc Id: ENSMUSP00000020681   ⟸   ENSMUST00000020681
RefSeq Acc Id: ENSMUSP00000116609   ⟸   ENSMUST00000151880
RefSeq Acc Id: ENSMUSP00000122142   ⟸   ENSMUST00000126128
RefSeq Acc Id: XP_036012344   ⟸   XM_036156451
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BHJ9-F1-model_v2 AlphaFold Q8BHJ9 1-585 view protein structure

Promoters
RGD ID:6822159
Promoter ID:MM_KWN:7025
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung,   MEF_B4
Transcripts:NM_148673,   NM_198936,   OTTMUST00000012155,   OTTMUST00000076021
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361143,247,111 - 43,247,611 (+)MPROMDB
RGD ID:8674340
Promoter ID:EPDNEW_M15201
Type:initiation region
Name:Slu7_1
Description:Mus musculus SLU7 splicing factor homolog , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381143,433,759 - 43,433,819EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385598 AgrOrtholog
Ensembl Genes ENSMUSG00000020409 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020681 ENTREZGENE
  ENSMUST00000020681.10 UniProtKB/Swiss-Prot
  ENSMUST00000126128.8 UniProtKB/TrEMBL
  ENSMUST00000151880 ENTREZGENE
  ENSMUST00000151880.8 UniProtKB/TrEMBL
  ENSMUST00000178622.3 UniProtKB/Swiss-Prot
InterPro Slu7_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Splicing_factor_SLU7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:193116 UniProtKB/Swiss-Prot
MGD MGI:2385598 ENTREZGENE
NCBI Gene 193116 ENTREZGENE
PANTHER PRE-MRNA-SPLICING FACTOR SLU7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12942 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Slu7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slu7 PhenoGen
UniProt B0QZT9_MOUSE UniProtKB/TrEMBL
  Q3KQQ3 ENTREZGENE
  Q5SRU1 ENTREZGENE
  Q63ZX3 ENTREZGENE
  Q6P923 ENTREZGENE
  Q8BHJ9 ENTREZGENE
  Q8BL59 ENTREZGENE
  Q8BXD5 ENTREZGENE
  Q8R3A1_MOUSE UniProtKB/TrEMBL
  Q8R5C1 ENTREZGENE
  Q91YV6 ENTREZGENE
  SLU7_MOUSE UniProtKB/Swiss-Prot
  Z4YM25 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q3KQQ3 UniProtKB/Swiss-Prot
  Q5SRU1 UniProtKB/Swiss-Prot
  Q63ZX3 UniProtKB/Swiss-Prot
  Q6P923 UniProtKB/Swiss-Prot
  Q8BL59 UniProtKB/Swiss-Prot
  Q8BXD5 UniProtKB/Swiss-Prot
  Q8R5C1 UniProtKB/Swiss-Prot
  Q91YV6 UniProtKB/Swiss-Prot