Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Weight Gain | | ISO | SLU7 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19030233 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Weight Gain | | ISO | SLU7 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19030233 | |
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# | Reference Title | Reference Citation |
1. | A day in the life of the spliceosome. | Matera AG and Wang Z, Nat Rev Mol Cell Biol. 2014 Feb;15(2):108-21. doi: 10.1038/nrm3742. |
2. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
3. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:9371744 | PMID:10349636 | PMID:10647016 | PMID:10725249 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:11238888 | PMID:11544199 | PMID:12466851 |
PMID:12477932 | PMID:14610273 | PMID:16141072 | PMID:16141073 | PMID:17804646 | PMID:21677750 | PMID:21873635 | PMID:22922362 | PMID:24586484 | PMID:24865429 | PMID:29870742 | PMID:30973865 |
PMID:32325033 | PMID:34170569 |
Slu7 (Mus musculus - house mouse) |
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SLU7 (Homo sapiens - human) |
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Slu7 (Rattus norvegicus - Norway rat) |
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Slu7 (Chinchilla lanigera - long-tailed chinchilla) |
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SLU7 (Pan paniscus - bonobo/pygmy chimpanzee) |
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SLU7 (Canis lupus familiaris - dog) |
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Slu7 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SLU7 (Sus scrofa - pig) |
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SLU7 (Chlorocebus sabaeus - green monkey) |
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Slu7 (Heterocephalus glaber - naked mole-rat) |
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Variants in Slu7
378 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
BE200474 |
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BB260036 |
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RH136514 |
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01.MMHAP59FRA7.seq |
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Slu7 |
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D11Ertd730e |
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D3Bwg0878e |
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RefSeq Transcripts | NM_148673 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_198936 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011248823 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036156451 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AK029117 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK046262 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK047597 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK049178 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL670472 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC013810 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC023057 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC025870 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC060954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC082780 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC106099 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY243619 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466575 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000020681 ⟹ ENSMUSP00000020681 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000126128 ⟹ ENSMUSP00000122142 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000136541 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000149402 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000151880 ⟹ ENSMUSP00000116609 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000178622 ⟹ ENSMUSP00000137281 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_148673 ⟹ NP_683514 | ||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_198936 ⟹ NP_945174 | ||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011248823 ⟹ XP_011247125 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036156451 ⟹ XP_036012344 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_683514 | (Get FASTA) | NCBI Sequence Viewer |
NP_945174 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011247125 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036012344 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH13810 | (Get FASTA) | NCBI Sequence Viewer |
AAH23057 | (Get FASTA) | NCBI Sequence Viewer | |
AAH25870 | (Get FASTA) | NCBI Sequence Viewer | |
AAH60954 | (Get FASTA) | NCBI Sequence Viewer | |
AAH82780 | (Get FASTA) | NCBI Sequence Viewer | |
AAI06100 | (Get FASTA) | NCBI Sequence Viewer | |
BAC26306 | (Get FASTA) | NCBI Sequence Viewer | |
BAC32662 | (Get FASTA) | NCBI Sequence Viewer | |
BAC33093 | (Get FASTA) | NCBI Sequence Viewer | |
BAC33589 | (Get FASTA) | NCBI Sequence Viewer | |
EDL33859 | (Get FASTA) | NCBI Sequence Viewer | |
EDL33860 | (Get FASTA) | NCBI Sequence Viewer | |
EDL33861 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000020681 | ||
ENSMUSP00000020681.4 | |||
ENSMUSP00000116609 | |||
ENSMUSP00000116609.2 | |||
ENSMUSP00000122142.2 | |||
ENSMUSP00000137281.2 | |||
GenBank Protein | Q8BHJ9 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_683514 ⟸ NM_148673 |
- UniProtKB: | Q8R5C1 (UniProtKB/Swiss-Prot), Q8BXD5 (UniProtKB/Swiss-Prot), Q8BL59 (UniProtKB/Swiss-Prot), Q6P923 (UniProtKB/Swiss-Prot), Q63ZX3 (UniProtKB/Swiss-Prot), Q5SRU1 (UniProtKB/Swiss-Prot), Q3KQQ3 (UniProtKB/Swiss-Prot), Q91YV6 (UniProtKB/Swiss-Prot), Q8BHJ9 (UniProtKB/Swiss-Prot), Z4YM25 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_945174 ⟸ NM_198936 |
- UniProtKB: | Q8R5C1 (UniProtKB/Swiss-Prot), Q8BXD5 (UniProtKB/Swiss-Prot), Q8BL59 (UniProtKB/Swiss-Prot), Q6P923 (UniProtKB/Swiss-Prot), Q63ZX3 (UniProtKB/Swiss-Prot), Q5SRU1 (UniProtKB/Swiss-Prot), Q3KQQ3 (UniProtKB/Swiss-Prot), Q91YV6 (UniProtKB/Swiss-Prot), Q8BHJ9 (UniProtKB/Swiss-Prot), Z4YM25 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_011247125 ⟸ XM_011248823 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8R5C1 (UniProtKB/Swiss-Prot), Q8BXD5 (UniProtKB/Swiss-Prot), Q8BL59 (UniProtKB/Swiss-Prot), Q6P923 (UniProtKB/Swiss-Prot), Q63ZX3 (UniProtKB/Swiss-Prot), Q5SRU1 (UniProtKB/Swiss-Prot), Q3KQQ3 (UniProtKB/Swiss-Prot), Q91YV6 (UniProtKB/Swiss-Prot), Q8BHJ9 (UniProtKB/Swiss-Prot), Z4YM25 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000137281 ⟸ ENSMUST00000178622 |
RefSeq Acc Id: | ENSMUSP00000020681 ⟸ ENSMUST00000020681 |
RefSeq Acc Id: | ENSMUSP00000116609 ⟸ ENSMUST00000151880 |
RefSeq Acc Id: | ENSMUSP00000122142 ⟸ ENSMUST00000126128 |
RefSeq Acc Id: | XP_036012344 ⟸ XM_036156451 |
- Peptide Label: | isoform X2 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q8BHJ9-F1-model_v2 | AlphaFold | Q8BHJ9 | 1-585 | view protein structure |
RGD ID: | 6822159 | ||||||||
Promoter ID: | MM_KWN:7025 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Lung, MEF_B4 | ||||||||
Transcripts: | NM_148673, NM_198936, OTTMUST00000012155, OTTMUST00000076021 | ||||||||
Position: |
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RGD ID: | 8674340 | ||||||||
Promoter ID: | EPDNEW_M15201 | ||||||||
Type: | initiation region | ||||||||
Name: | Slu7_1 | ||||||||
Description: | Mus musculus SLU7 splicing factor homolog , transcript variant2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:2385598 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000020409 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000020681 | ENTREZGENE |
ENSMUST00000020681.10 | UniProtKB/Swiss-Prot | |
ENSMUST00000126128.8 | UniProtKB/TrEMBL | |
ENSMUST00000151880 | ENTREZGENE | |
ENSMUST00000151880.8 | UniProtKB/TrEMBL | |
ENSMUST00000178622.3 | UniProtKB/Swiss-Prot | |
InterPro | Slu7_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Splicing_factor_SLU7 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:193116 | UniProtKB/Swiss-Prot |
MGD | MGI:2385598 | ENTREZGENE |
NCBI Gene | 193116 | ENTREZGENE |
PANTHER | PRE-MRNA-SPLICING FACTOR SLU7 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR12942 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Slu7 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Slu7 | PhenoGen |
UniProt | B0QZT9_MOUSE | UniProtKB/TrEMBL |
Q3KQQ3 | ENTREZGENE | |
Q5SRU1 | ENTREZGENE | |
Q63ZX3 | ENTREZGENE | |
Q6P923 | ENTREZGENE | |
Q8BHJ9 | ENTREZGENE | |
Q8BL59 | ENTREZGENE | |
Q8BXD5 | ENTREZGENE | |
Q8R3A1_MOUSE | UniProtKB/TrEMBL | |
Q8R5C1 | ENTREZGENE | |
Q91YV6 | ENTREZGENE | |
SLU7_MOUSE | UniProtKB/Swiss-Prot | |
Z4YM25 | ENTREZGENE, UniProtKB/TrEMBL | |
UniProt Secondary | Q3KQQ3 | UniProtKB/Swiss-Prot |
Q5SRU1 | UniProtKB/Swiss-Prot | |
Q63ZX3 | UniProtKB/Swiss-Prot | |
Q6P923 | UniProtKB/Swiss-Prot | |
Q8BL59 | UniProtKB/Swiss-Prot | |
Q8BXD5 | UniProtKB/Swiss-Prot | |
Q8R5C1 | UniProtKB/Swiss-Prot | |
Q91YV6 | UniProtKB/Swiss-Prot |