S100a7l2 (S100 calcium binding protein A7 like 2) - Rat Genome Database

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Gene: S100a7l2 (S100 calcium binding protein A7 like 2) Mus musculus
Analyze
No known orthologs.
Symbol: S100a7l2
Name: S100 calcium binding protein A7 like 2
RGD ID: 1618162
MGI Page MGI
Description: Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be involved in several processes, including leukocyte migration involved in inflammatory response; neutrophil aggregation; and neutrophil chemotaxis.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9130204L05Rik; Gm127; RIKEN cDNA 9130204L05 gene; S100 calcium-binding protein, ventral prostate like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,995,444 - 91,014,736 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,995,444 - 90,998,110 (-)EnsemblGRCm39 Ensembl
GRCm38391,088,137 - 91,107,429 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl391,088,137 - 91,090,803 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,892,059 - 90,894,727 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36391,174,064 - 91,193,321 (-)NCBIMGSCv36mm8
Celera391,126,891 - 91,129,551 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map340.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics

Variants

.
Variants in S100a7l2
310 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:100
Interacting mature miRNAs:101
Transcripts:ENSMUST00000166173
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000166173   ⟹   ENSMUSP00000130512
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,995,444 - 90,998,110 (-)Ensembl
GRCm38.p6 Ensembl391,088,137 - 91,090,803 (-)Ensembl
RefSeq Acc Id: NM_001101461   ⟹   NP_001094931
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,995,444 - 90,998,112 (-)NCBI
GRCm38391,088,137 - 91,090,805 (-)NCBI
MGSCv37390,892,059 - 90,894,727 (-)RGD
Celera391,126,891 - 91,129,551 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011240088   ⟹   XP_011238390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,995,444 - 91,014,736 (-)NCBI
GRCm38391,088,137 - 91,107,429 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011240089   ⟹   XP_011238391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,995,444 - 91,014,736 (-)NCBI
GRCm38391,088,137 - 91,107,429 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001094931 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238390 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238391 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL15106 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000130512
  ENSMUSP00000130512.2
RefSeq Acc Id: NP_001094931   ⟸   NM_001101461
- UniProtKB: G3UWB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011238391   ⟸   XM_011240089
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011238390   ⟸   XM_011240088
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000130512   ⟸   ENSMUST00000166173
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3UWB8-F1-model_v2 AlphaFold G3UWB8 1-92 view protein structure

Promoters
RGD ID:6881374
Promoter ID:EPDNEW_M4138
Type:single initiation site
Name:9130204L05Rik_1
Description:Mus musculus RIKEN cDNA 9130204L05 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38391,090,805 - 91,090,865EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2684973 AgrOrtholog
Ensembl Genes ENSMUSG00000091175 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000166173 ENTREZGENE
  ENSMUST00000166173.3 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-like_dom UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
KEGG Report mmu:229550 UniProtKB/TrEMBL
MGD MGI:2684973 ENTREZGENE
NCBI Gene 229550 ENTREZGENE
Pfam S_100 UniProtKB/TrEMBL
PhenoGen S100a7l2 PhenoGen
SMART S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt G3UWB8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-20 S100a7l2  S100 calcium binding protein A7 like 2  9130204L05Rik  RIKEN cDNA 9130204L05 gene  Symbol and/or name change 5135510 APPROVED