Nol4 (nucleolar protein 4) - Rat Genome Database

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Gene: Nol4 (nucleolar protein 4) Mus musculus
Analyze
Symbol: Nol4
Name: nucleolar protein 4
RGD ID: 1618005
MGI Page MGI
Description: Predicted to be located in nucleus. Is expressed in central nervous system and sensory organ. Orthologous to human NOL4 (nucleolar protein 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700013J13Rik; 4930568N03Rik; Gm1262
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391822,826,209 - 23,174,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1822,826,238 - 23,174,710 (-)EnsemblGRCm39 Ensembl
GRCm381822,693,152 - 23,042,640 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1822,693,181 - 23,041,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv371822,851,656 - 23,200,154 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361822,836,416 - 23,181,666 (-)NCBIMGSCv36mm8
Celera1823,176,162 - 23,536,179 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1811.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068   PMID:25366156  
PMID:32325033   PMID:34321999   PMID:34868271  


Genomics

Comparative Map Data
Nol4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391822,826,209 - 23,174,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1822,826,238 - 23,174,710 (-)EnsemblGRCm39 Ensembl
GRCm381822,693,152 - 23,042,640 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1822,693,181 - 23,041,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv371822,851,656 - 23,200,154 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361822,836,416 - 23,181,666 (-)NCBIMGSCv36mm8
Celera1823,176,162 - 23,536,179 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1811.96NCBI
NOL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381833,851,100 - 34,224,913 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1833,851,100 - 34,224,952 (-)EnsemblGRCh38hg38GRCh38
GRCh371831,431,064 - 31,804,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361829,685,062 - 30,057,444 (-)NCBINCBI36Build 36hg18NCBI36
Build 341829,686,409 - 30,057,513NCBI
Celera1828,239,387 - 28,611,397 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
HuRef1828,290,445 - 28,662,648 (-)NCBIHuRef
CHM1_11831,358,224 - 31,730,679 (-)NCBICHM1_1
T2T-CHM13v2.01834,042,633 - 34,416,765 (-)NCBIT2T-CHM13v2.0
Nol4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81814,207,303 - 14,569,697 (-)NCBIGRCr8
mRatBN7.21813,932,499 - 14,294,873 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1813,932,510 - 14,296,286 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1814,118,579 - 14,480,839 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01814,906,228 - 15,268,504 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01814,175,243 - 14,543,815 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01813,658,260 - 14,016,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1813,658,271 - 14,016,713 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01813,441,528 - 13,801,153 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41814,312,224 - 14,718,842 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11814,340,233 - 14,744,196 (-)NCBI
Celera1813,911,298 - 14,272,965 (-)NCBICelera
Cytogenetic Map18p12NCBI
Nol4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540220,780,251 - 21,106,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540220,781,485 - 21,106,508 (-)NCBIChiLan1.0ChiLan1.0
NOL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21751,224,685 - 51,606,604 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11836,917,282 - 37,299,195 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01827,054,678 - 27,435,085 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11830,646,179 - 31,025,952 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1830,646,179 - 31,026,620 (-)Ensemblpanpan1.1panPan2
NOL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1755,617,119 - 56,007,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl755,618,123 - 56,006,041 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha754,919,320 - 55,440,480 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0755,454,410 - 55,977,017 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl755,586,330 - 55,976,997 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1755,142,088 - 55,663,223 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0755,162,627 - 55,684,834 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0755,459,157 - 55,980,811 (+)NCBIUU_Cfam_GSD_1.0
Nol4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494451,340,391 - 51,651,163 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651710,669,193 - 10,978,769 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651710,668,250 - 10,978,766 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6117,631,227 - 118,087,992 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16117,631,631 - 118,088,026 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26109,982,552 - 110,275,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NOL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11846,519,566 - 46,901,694 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1846,521,206 - 46,901,764 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605021,021,668 - 21,420,272 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nol4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247798,359,584 - 8,685,781 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247798,359,844 - 8,687,368 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nol4
10708 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2476
Count of miRNA genes:585
Interacting mature miRNAs:769
Transcripts:ENSMUST00000069215, ENSMUST00000081423, ENSMUST00000092015, ENSMUST00000097651, ENSMUST00000097652, ENSMUST00000164186, ENSMUST00000164521, ENSMUST00000164893, ENSMUST00000165323
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142127Rafaril_mRafar interacting locus (mouse)Not determined18123108555Mouse
14928307Manh83_mmandible shape 83 (mouse)18126902168Mouse
11354953Mom21_mmodifier of Min 21 (mouse)18128893823Mouse
12801462Intim3_mintima modifier 3 (mouse)18131720756Mouse
12801458Intmrm3_mintima/media ratio modifier 3 (mouse)18131720756Mouse
13207585Mwmlpt3_mMorris water maze latency to platform, training, 3 (mouse)18133547739Mouse
13207589Mwmlpa3_mMorris water maze latency to platform, all, 3 (mouse)18133547739Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
12910787Pwbwq18_mpost-weaning body weight QTL 18 (mouse)181826552930570819Mouse
12910805Pwbwq17_mpost-weaning body weight QTL 17 (mouse)181826552930570819Mouse
12910819Ogrq6_moverall growth rate QTL 6 (mouse)181826552930570819Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
1301950Otx2m1_morthodenticle homolog 2 (Drosophila) modifier 1 (mouse)Not determined182156868236187740Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse

Markers in Region
BB384708  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381822,693,496 - 22,693,592UniSTSGRCm38
MGSCv371822,851,997 - 22,852,093UniSTSGRCm37
Celera1823,176,503 - 23,176,599UniSTS
Cytogenetic Map18A2UniSTS
Whitehead/MRC_RH18356.0UniSTS
UniSTS:224895  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381823,039,145 - 23,039,323UniSTSGRCm38
MGSCv371823,197,646 - 23,197,824UniSTSGRCm37
Celera1823,533,671 - 23,533,849UniSTS
Cytogenetic Map18A2UniSTS
WI-15749  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381822,693,189 - 22,693,320UniSTSGRCm38
MGSCv371822,851,690 - 22,851,821UniSTSGRCm37
Celera1823,176,196 - 23,176,327UniSTS
Cytogenetic Map18A2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001161483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC103368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB263751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB578752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000069215   ⟹   ENSMUSP00000064166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1822,827,355 - 22,983,811 (-)Ensembl
GRCm38.p6 Ensembl1822,694,298 - 22,850,754 (-)Ensembl
RefSeq Acc Id: ENSMUST00000081423   ⟹   ENSMUSP00000080150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1822,826,438 - 23,171,713 (-)Ensembl
GRCm38.p6 Ensembl1822,693,381 - 23,038,656 (-)Ensembl
RefSeq Acc Id: ENSMUST00000092015   ⟹   ENSMUSP00000089642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1822,826,238 - 22,983,811 (-)Ensembl
GRCm38.p6 Ensembl1822,693,181 - 22,850,754 (-)Ensembl
RefSeq Acc Id: ENSMUST00000097651   ⟹   ENSMUSP00000095256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1822,826,691 - 23,174,710 (-)Ensembl
GRCm38.p6 Ensembl1822,693,634 - 23,041,653 (-)Ensembl
RefSeq Acc Id: ENSMUST00000097652
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1823,054,929 - 23,085,367 (-)Ensembl
GRCm38.p6 Ensembl1822,921,872 - 22,952,310 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164186   ⟹   ENSMUSP00000130950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1822,827,592 - 23,173,401 (-)Ensembl
GRCm38.p6 Ensembl1822,694,535 - 23,040,344 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1822,956,360 - 22,961,419 (-)Ensembl
GRCm38.p6 Ensembl1822,823,303 - 22,828,362 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164893   ⟹   ENSMUSP00000127870
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1822,827,581 - 23,173,135 (-)Ensembl
GRCm38.p6 Ensembl1822,694,524 - 23,040,078 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165323   ⟹   ENSMUSP00000125860
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1823,045,743 - 23,171,996 (-)Ensembl
GRCm38.p6 Ensembl1822,912,686 - 23,038,939 (-)Ensembl
RefSeq Acc Id: NM_001161483   ⟹   NP_001154955
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,212 - 23,171,720 (-)NCBI
GRCm381822,693,155 - 23,038,663 (-)NCBI
MGSCv371822,851,656 - 23,200,154 (-)RGD
Celera1823,176,162 - 23,536,179 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001347509   ⟹   NP_001334438
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,212 - 23,174,738 (-)NCBI
GRCm381822,693,155 - 23,041,681 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001347510   ⟹   NP_001334439
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,212 - 23,174,738 (-)NCBI
GRCm381822,693,155 - 23,041,681 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361223   ⟹   NP_001348152
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,212 - 23,172,461 (-)NCBI
GRCm381822,693,155 - 23,039,404 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361224   ⟹   NP_001348153
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,212 - 23,174,738 (-)NCBI
GRCm381822,693,155 - 23,041,681 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361225   ⟹   NP_001348154
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,212 - 23,172,461 (-)NCBI
GRCm381822,693,155 - 23,039,404 (-)NCBI
Sequence:
RefSeq Acc Id: NM_199024   ⟹   NP_950189
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,212 - 23,174,738 (-)NCBI
GRCm381822,693,155 - 23,041,681 (-)NCBI
MGSCv371822,851,656 - 23,200,154 (-)RGD
Celera1823,176,162 - 23,536,179 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525999   ⟹   XP_006526062
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,209 - 23,172,684 (-)NCBI
GRCm381822,693,152 - 23,039,624 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250499   ⟹   XP_030106359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,217 - 23,171,891 (-)NCBI
GRCm381822,693,152 - 23,038,831 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250501   ⟹   XP_030106361
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,209 - 23,174,926 (-)NCBI
GRCm381822,693,152 - 23,042,640 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250502   ⟹   XP_030106362
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,209 - 23,172,685 (-)NCBI
GRCm381822,693,152 - 23,038,910 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250503   ⟹   XP_030106363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,217 - 23,172,684 (-)NCBI
GRCm381822,693,152 - 23,039,622 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250504   ⟹   XP_030106364
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,209 - 23,172,683 (-)NCBI
GRCm381822,693,172 - 23,038,910 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161167   ⟹   XP_036017060
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391822,826,209 - 23,174,926 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001154955 (Get FASTA)   NCBI Sequence Viewer  
  NP_001334438 (Get FASTA)   NCBI Sequence Viewer  
  NP_001334439 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348152 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348153 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348154 (Get FASTA)   NCBI Sequence Viewer  
  NP_950189 (Get FASTA)   NCBI Sequence Viewer  
  XP_006526062 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106359 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106361 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106362 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106363 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106364 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017060 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH56377 (Get FASTA)   NCBI Sequence Viewer  
  BAB24340 (Get FASTA)   NCBI Sequence Viewer  
  BAB24478 (Get FASTA)   NCBI Sequence Viewer  
  BAC26621 (Get FASTA)   NCBI Sequence Viewer  
  BAC39694 (Get FASTA)   NCBI Sequence Viewer  
  EDK96972 (Get FASTA)   NCBI Sequence Viewer  
  EDK96973 (Get FASTA)   NCBI Sequence Viewer  
  EDK96974 (Get FASTA)   NCBI Sequence Viewer  
  EDK96975 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000064166.7
  ENSMUSP00000080150
  ENSMUSP00000080150.7
  ENSMUSP00000089642.5
  ENSMUSP00000095256
  ENSMUSP00000095256.4
  ENSMUSP00000125860.2
  ENSMUSP00000127870
  ENSMUSP00000127870.2
  ENSMUSP00000130950
  ENSMUSP00000130950.2
GenBank Protein P60954 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_950189   ⟸   NM_199024
- Peptide Label: isoform 2
- UniProtKB: P60954 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001154955   ⟸   NM_001161483
- Peptide Label: isoform 1
- UniProtKB: P60954 (UniProtKB/Swiss-Prot),   Q8C0U4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006526062   ⟸   XM_006525999
- Peptide Label: isoform X1
- UniProtKB: P60954 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030106361   ⟸   XM_030250501
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030106363   ⟸   XM_030250503
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030106362   ⟸   XM_030250502
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030106359   ⟸   XM_030250499
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001334439   ⟸   NM_001347510
- Peptide Label: isoform 4
- UniProtKB: G3UW35 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001334438   ⟸   NM_001347509
- Peptide Label: isoform 3
- UniProtKB: E9Q947 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348153   ⟸   NM_001361224
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001348154   ⟸   NM_001361225
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001348152   ⟸   NM_001361223
- Peptide Label: isoform 5
RefSeq Acc Id: XP_030106364   ⟸   XM_030250504
- Peptide Label: isoform X5
RefSeq Acc Id: ENSMUSP00000127870   ⟸   ENSMUST00000164893
RefSeq Acc Id: ENSMUSP00000130950   ⟸   ENSMUST00000164186
RefSeq Acc Id: ENSMUSP00000125860   ⟸   ENSMUST00000165323
RefSeq Acc Id: ENSMUSP00000089642   ⟸   ENSMUST00000092015
RefSeq Acc Id: ENSMUSP00000080150   ⟸   ENSMUST00000081423
RefSeq Acc Id: ENSMUSP00000064166   ⟸   ENSMUST00000069215
RefSeq Acc Id: ENSMUSP00000095256   ⟸   ENSMUST00000097651
RefSeq Acc Id: XP_036017060   ⟸   XM_036161167
- Peptide Label: isoform X6

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P60954-F1-model_v2 AlphaFold P60954 1-483 view protein structure

Promoters
RGD ID:13677228
Promoter ID:EPDNEW_M22762
Type:single initiation site
Name:Nol4_4
Description:Mus musculus nucleolar protein 4 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22763  EPDNEW_M22764  EPDNEW_M22765  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381822,762,468 - 22,762,528EPDNEW
RGD ID:13677226
Promoter ID:EPDNEW_M22763
Type:initiation region
Name:Nol4_3
Description:Mus musculus nucleolar protein 4 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22762  EPDNEW_M22764  EPDNEW_M22765  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381822,850,790 - 22,850,850EPDNEW
RGD ID:6829412
Promoter ID:MM_KWN:24748
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Spleen
Transcripts:UC008EFO.1,   UC008EFP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361823,008,871 - 23,009,371 (-)MPROMDB
RGD ID:13677230
Promoter ID:EPDNEW_M22764
Type:multiple initiation site
Name:Nol4_2
Description:Mus musculus nucleolar protein 4 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22763  EPDNEW_M22762  EPDNEW_M22765  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381823,038,664 - 23,038,724EPDNEW
RGD ID:13677232
Promoter ID:EPDNEW_M22765
Type:multiple initiation site
Name:Nol4_1
Description:Mus musculus nucleolar protein 4 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22763  EPDNEW_M22762  EPDNEW_M22764  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381823,041,653 - 23,041,713EPDNEW
RGD ID:6829408
Promoter ID:MM_KWN:24749
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_001161483
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361823,197,346 - 23,197,897 (-)MPROMDB
RGD ID:6829443
Promoter ID:MM_KWN:24750
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0
Transcripts:ENSMUST00000097652,   NM_199024
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361823,199,771 - 23,200,271 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2441684 AgrOrtholog
Ensembl Genes ENSMUSG00000041923 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069215.13 UniProtKB/TrEMBL
  ENSMUST00000081423 ENTREZGENE
  ENSMUST00000081423.13 UniProtKB/Swiss-Prot
  ENSMUST00000092015.11 UniProtKB/TrEMBL
  ENSMUST00000097651 ENTREZGENE
  ENSMUST00000097651.10 UniProtKB/Swiss-Prot
  ENSMUST00000164186 ENTREZGENE
  ENSMUST00000164186.8 UniProtKB/TrEMBL
  ENSMUST00000164893 ENTREZGENE
  ENSMUST00000164893.8 UniProtKB/TrEMBL
  ENSMUST00000165323.2 UniProtKB/TrEMBL
InterPro NOL4/NOL4L UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:319211 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2441684 ENTREZGENE
NCBI Gene 319211 ENTREZGENE
PANTHER PTHR12449 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12449:SF17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nol4 PhenoGen
UniProt E9Q5X0_MOUSE UniProtKB/TrEMBL
  E9Q947 ENTREZGENE, UniProtKB/TrEMBL
  F6XSA1_MOUSE UniProtKB/TrEMBL
  F7BIN0_MOUSE UniProtKB/TrEMBL
  G3UW35 ENTREZGENE, UniProtKB/TrEMBL
  NOL4_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BUA3_MOUSE UniProtKB/TrEMBL
  Q8C0U4 ENTREZGENE, UniProtKB/TrEMBL
  Q9CVW6_MOUSE UniProtKB/TrEMBL
  Q9CVY4_MOUSE UniProtKB/TrEMBL