AI593442 (expressed sequence AI593442) - Rat Genome Database

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Gene: AI593442 (expressed sequence AI593442) Mus musculus
Analyze
Symbol: AI593442
Name: expressed sequence AI593442
RGD ID: 1617969
MGI Page MGI
Description: Predicted to be located in membrane. Is expressed in ear; nervous system; and urinary system. Orthologous to human C11orf87 (chromosome 11 open reading frame 87).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E130102D23; hypothetical protein LOC330941; MGC130101; uncharacterized protein C11orf87 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39952,584,332 - 52,593,434 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl952,584,342 - 52,591,080 (-)EnsemblGRCm39 Ensembl
GRCm38952,673,032 - 52,682,134 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl952,673,042 - 52,679,780 (-)EnsemblGRCm38mm10GRCm38
MGSCv37952,481,147 - 52,487,534 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36952,436,805 - 52,441,832 (-)NCBIMGSCv36mm8
Celera949,941,601 - 49,947,986 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14681479   PMID:16141072   PMID:16141073   PMID:16516881   PMID:21267068  
PMID:34321999  


Genomics

Comparative Map Data
AI593442
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39952,584,332 - 52,593,434 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl952,584,342 - 52,591,080 (-)EnsemblGRCm39 Ensembl
GRCm38952,673,032 - 52,682,134 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl952,673,042 - 52,679,780 (-)EnsemblGRCm38mm10GRCm38
MGSCv37952,481,147 - 52,487,534 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36952,436,805 - 52,441,832 (-)NCBIMGSCv36mm8
Celera949,941,601 - 49,947,986 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.12NCBI
C11orf87
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811109,422,190 - 109,429,167 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11109,422,190 - 109,429,167 (+)EnsemblGRCh38hg38GRCh38
GRCh3711109,292,916 - 109,299,893 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611108,798,085 - 108,801,533 (+)NCBINCBI36Build 36hg18NCBI36
Celera11106,447,057 - 106,454,104 (+)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11105,218,064 - 105,225,090 (+)NCBIHuRef
CHM1_111109,175,820 - 109,182,869 (+)NCBICHM1_1
T2T-CHM13v2.011109,432,359 - 109,439,336 (+)NCBIT2T-CHM13v2.0
C8h11orf87
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8861,958,626 - 61,966,119 (-)NCBIGRCr8
mRatBN7.2853,062,361 - 53,069,882 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl853,062,360 - 53,069,538 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx858,599,366 - 58,606,012 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0856,878,375 - 56,885,021 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0854,742,586 - 54,749,232 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0857,248,620 - 57,255,599 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl857,248,620 - 57,255,263 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0855,822,041 - 55,828,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4856,098,448 - 56,105,092 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera852,568,983 - 52,575,602 (-)NCBICelera
Cytogenetic Map8q24NCBI
CUNH11orf87
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541211,448,134 - 11,455,153 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541211,447,935 - 11,455,153 (+)NCBIChiLan1.0ChiLan1.0
C9H11orf87
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29110,167,276 - 110,174,318 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111111,260,362 - 111,267,385 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011104,308,303 - 104,315,320 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111107,775,512 - 107,779,062 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11107,776,999 - 107,777,592 (+)Ensemblpanpan1.1panPan2
C5H11orf87
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1523,283,434 - 23,291,376 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl523,288,441 - 23,289,768 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha523,204,053 - 23,211,407 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0523,310,761 - 23,318,076 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl523,314,920 - 23,317,163 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1523,367,949 - 23,375,289 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0523,268,100 - 23,275,445 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0523,319,295 - 23,326,587 (-)NCBIUU_Cfam_GSD_1.0
CUNH11orf87
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494792,053,270 - 92,060,285 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366124,648,726 - 4,652,329 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366124,645,324 - 4,652,361 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C9H11orf87
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl937,613,308 - 37,620,660 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1937,297,438 - 37,939,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2942,086,774 - 42,089,450 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH11orf87
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11100,839,147 - 100,846,115 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1100,840,648 - 100,841,241 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604325,115,272 - 25,121,875 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH11orf87
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247844,327,238 - 4,334,209 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247844,327,180 - 4,334,238 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AI593442
341 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2055
Count of miRNA genes:729
Interacting mature miRNAs:964
Transcripts:ENSMUST00000098768
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
4141754Fecq4_mfecundity QTL 4 (mouse)Not determined94754302457805204Mouse
13515057Adip20b_madiposity 20b (mouse)94870090853791702Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94942029863239852Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse

Markers in Region
AI593442  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38952,673,238 - 52,673,322UniSTSGRCm38
MGSCv37952,481,343 - 52,481,427UniSTSGRCm37
Celera949,941,797 - 49,941,881UniSTS
Cytogenetic Map9A5.3UniSTS
Whitehead/MRC_RH9530.82UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000098768   ⟹   ENSMUSP00000096365
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl952,584,344 - 52,590,729 (-)Ensembl
GRCm38.p6 Ensembl952,673,044 - 52,679,429 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213843   ⟹   ENSMUSP00000149128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl952,589,535 - 52,590,737 (-)Ensembl
GRCm38.p6 Ensembl952,678,235 - 52,679,437 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213937   ⟹   ENSMUSP00000149532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl952,584,342 - 52,591,080 (-)Ensembl
GRCm38.p6 Ensembl952,673,042 - 52,679,780 (-)Ensembl
RefSeq Acc Id: NM_001286641   ⟹   NP_001273570
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39952,584,332 - 52,591,080 (-)NCBI
GRCm38952,673,032 - 52,679,780 (-)NCBI
Celera949,941,591 - 49,948,337 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178906   ⟹   NP_849237
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39952,584,332 - 52,590,737 (-)NCBI
GRCm38952,673,032 - 52,679,437 (-)NCBI
MGSCv37952,481,147 - 52,487,534 (-)RGD
Celera949,941,591 - 49,948,337 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510458   ⟹   XP_006510521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39952,584,342 - 52,593,434 (-)NCBI
GRCm38952,673,042 - 52,682,134 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242565   ⟹   XP_011240867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39952,584,342 - 52,590,517 (-)NCBI
GRCm38952,673,042 - 52,679,026 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244429   ⟹   XP_030100289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39952,584,342 - 52,590,517 (-)NCBI
GRCm38952,673,042 - 52,679,219 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_849237   ⟸   NM_178906
- Peptide Label: precursor
- UniProtKB: Q8CC42 (UniProtKB/Swiss-Prot),   Q32M26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273570   ⟸   NM_001286641
- Peptide Label: precursor
- UniProtKB: Q8CC42 (UniProtKB/Swiss-Prot),   Q32M26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510521   ⟸   XM_006510458
- Peptide Label: isoform X1
- UniProtKB: Q8CC42 (UniProtKB/Swiss-Prot),   Q32M26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011240867   ⟸   XM_011242565
- Peptide Label: isoform X1
- UniProtKB: Q8CC42 (UniProtKB/Swiss-Prot),   Q32M26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030100289   ⟸   XM_030244429
- Peptide Label: isoform X1
- UniProtKB: Q32M26 (UniProtKB/Swiss-Prot),   Q8CC42 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000096365   ⟸   ENSMUST00000098768
RefSeq Acc Id: ENSMUSP00000149532   ⟸   ENSMUST00000213937
RefSeq Acc Id: ENSMUSP00000149128   ⟸   ENSMUST00000213843

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q32M26-F1-model_v2 AlphaFold Q32M26 1-199 view protein structure

Promoters
RGD ID:6844083
Promoter ID:MM_KWN:57351
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC009PLX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36952,483,861 - 52,484,361 (-)MPROMDB
RGD ID:6844080
Promoter ID:MM_KWN:57353
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:AK138605_GM1715,   NM_178906,   UC009PLY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36952,487,361 - 52,487,861 (-)MPROMDB
RGD ID:8669602
Promoter ID:EPDNEW_M12832
Type:initiation region
Name:AI593442_1
Description:Mus musculus expressed sequence AI593442 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38952,679,745 - 52,679,805EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2143099 AgrOrtholog
Ensembl Genes ENSMUSG00000078307 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098768 ENTREZGENE
  ENSMUST00000098768.3 UniProtKB/Swiss-Prot
  ENSMUST00000213843.2 UniProtKB/TrEMBL
  ENSMUST00000213937 ENTREZGENE
  ENSMUST00000213937.2 UniProtKB/Swiss-Prot
InterPro C11orf87 UniProtKB/Swiss-Prot
KEGG Report mmu:330941 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2143099 ENTREZGENE
NCBI Gene 330941 ENTREZGENE
PANTHER PTHR31870 UniProtKB/Swiss-Prot
  SI:DKEY-183I3.9-RELATED UniProtKB/Swiss-Prot
PhenoGen AI593442 PhenoGen
UniProt A0A1L1SQP0_MOUSE UniProtKB/TrEMBL
  CK087_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BPR8_MOUSE UniProtKB/TrEMBL
  Q8CC42 ENTREZGENE
UniProt Secondary Q8CC42 UniProtKB/Swiss-Prot