Foxl3 (forkhead box L3) - Rat Genome Database

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Gene: Foxl3 (forkhead box L3) Mus musculus
Analyze
Symbol: Foxl3
Name: forkhead box L3
RGD ID: 1617936
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Orthologous to human FOXL3-OT1 (FOXL3 overlapping transcript 1) and FOXL3 (forkhead box L3).
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: EG384244; forkhead box L1-like; Gm5294
RGD Orthologs
Human
Rat
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,805,640 - 138,807,486 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,805,835 - 138,807,374 (+)EnsemblGRCm39 Ensembl
GRCm385138,819,865 - 138,821,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,820,080 - 138,821,619 (+)EnsemblGRCm38mm10GRCm38
MGSCv375139,295,436 - 139,297,573 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365139,073,124 - 139,075,261 (+)NCBIMGSCv36mm8
Celera5135,875,410 - 135,876,949 (+)NCBICelera
Cytogenetic Map5G2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:21873635  


Genomics

Comparative Map Data
Foxl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,805,640 - 138,807,486 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,805,835 - 138,807,374 (+)EnsemblGRCm39 Ensembl
GRCm385138,819,865 - 138,821,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,820,080 - 138,821,619 (+)EnsemblGRCm38mm10GRCm38
MGSCv375139,295,436 - 139,297,573 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365139,073,124 - 139,075,261 (+)NCBIMGSCv36mm8
Celera5135,875,410 - 135,876,949 (+)NCBICelera
Cytogenetic Map5G2NCBI
FOXL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387290,170 - 291,488 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7290,170 - 294,422 (+)EnsemblGRCh38hg38GRCh38
GRCh377330,136 - 331,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7p22.3NCBI
T2T-CHM13v2.07389,757 - 391,075 (+)NCBIT2T-CHM13v2.0
Foxl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81220,926,266 - 20,928,893 (-)NCBIGRCr8
mRatBN7.21215,812,177 - 15,814,534 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1215,812,674 - 15,814,534 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01217,902,045 - 17,904,348 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,902,521 - 17,904,254 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,893,918 - 19,896,110 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41216,332,382 - 16,334,529 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1217,564,618 - 17,566,783 (-)NCBICelera
Cytogenetic Map12q11NCBI
FOXL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v265,192,561 - 5,196,804 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1753,517,253 - 53,521,492 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07410,952 - 415,195 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FOXL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha617,904,716 - 17,906,692 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,562,267 - 16,564,243 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl616,562,678 - 16,564,300 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1616,364,717 - 16,366,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,291,171 - 16,293,145 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,581,214 - 16,583,190 (-)NCBIUU_Cfam_GSD_1.0
FOXL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12821,267,915 - 21,272,871 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666090147,372 - 151,683 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Foxl3
53 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:211
Count of miRNA genes:201
Interacting mature miRNAs:210
Transcripts:ENSMUST00000179205
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
13464143Bbaa2b_mB.burgdorferi-associated arthritis 2b (mouse)5133052969140709801Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000179205   ⟹   ENSMUSP00000137099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,805,835 - 138,807,374 (+)Ensembl
GRCm38.p6 Ensembl5138,820,080 - 138,821,619 (+)Ensembl
RefSeq Acc Id: NM_001195128   ⟹   NP_001182057
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,805,835 - 138,807,374 (+)NCBI
GRCm385138,820,080 - 138,821,619 (+)NCBI
Celera5135,875,410 - 135,876,949 (+)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504717   ⟹   XP_006504780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,805,640 - 138,807,486 (+)NCBI
GRCm385138,819,865 - 138,821,731 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001182057 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504780 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000137099
  ENSMUSP00000137099.2
RefSeq Acc Id: NP_001182057   ⟸   NM_001195128
- UniProtKB: J3QP53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504780   ⟸   XM_006504717
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000137099   ⟸   ENSMUST00000179205
Protein Domains
Fork-head

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-J3QP53-F1-model_v2 AlphaFold J3QP53 1-216 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3646467 AgrOrtholog
Ensembl Genes ENSMUSG00000094504 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000179205 ENTREZGENE
  ENSMUST00000179205.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro TF_fork_head UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report mmu:384244 UniProtKB/TrEMBL
MGD MGI:3646467 ENTREZGENE
NCBI Gene 384244 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN L3 UniProtKB/TrEMBL
Pfam Fork_head UniProtKB/TrEMBL
PhenoGen Foxl3 PhenoGen
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt J3QP53 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-24 Foxl3  forkhead box L3  Gm5294  predicted gene 5294  Symbol and/or name updated 27372883 PROVISIONAL