Gm7058 (predicted gene 7058) - Rat Genome Database

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Gene: Gm7058 (predicted gene 7058) Mus musculus
Analyze
Symbol: Gm7058
Name: predicted gene 7058
RGD ID: 1617808
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG631264
Related Functional Gene: Aldoa  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X131,069,958 - 131,070,868 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX131,069,955 - 131,070,856 (-)EnsemblGRCm39 Ensembl
GRCm38X132,169,209 - 132,170,119 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX132,169,206 - 132,170,107 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X128,703,748 - 128,704,658 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X127,515,556 - 127,692,537 (-)NCBIMGSCv36mm8
CeleraX115,061,832 - 115,062,742 (-)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX54.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm7058
22 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:186
Count of miRNA genes:171
Interacting mature miRNAs:180
Transcripts:ENSMUST00000119209
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse

Markers in Region
px-9a9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X132,291,139 - 132,291,322UniSTSGRCm38
MGSCv37X128,825,678 - 128,825,861UniSTSGRCm37
CeleraX115,178,643 - 115,178,826UniSTS
Cytogenetic MapXE3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_017962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL691418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000119209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX131,069,955 - 131,070,856 (-)Ensembl
GRCm38.p6 EnsemblX132,169,206 - 132,170,107 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082205 Ensembl, ENTREZGENE
MGD MGI:3643915 ENTREZGENE
NCBI Gene 631264 ENTREZGENE
PhenoGen Gm7058 PhenoGen