Gm8049 (predicted gene 8049) - Rat Genome Database

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Gene: Gm8049 (predicted gene 8049) Mus musculus
Analyze
Symbol: Gm8049
Name: predicted gene 8049
RGD ID: 1617748
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG666327
Related Functional Gene: Clpb  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39925,361,707 - 25,363,497 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl925,361,758 - 25,363,539 (+)EnsemblGRCm39 Ensembl
GRCm38925,450,411 - 25,452,201 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl925,450,462 - 25,452,243 (+)EnsemblGRCm38mm10GRCm38
MGSCv37925,258,047 - 25,259,796 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36925,200,322 - 25,200,747 (+)NCBIMGSCv36mm8
Celera922,711,583 - 22,713,332 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map910.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14610273  


Genomics

Variants

.
Variants in Gm8049
56 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300899Chol6_mcholesterol 6 (mouse)Not determined9129902913Mouse
13434920Dcollq1_mdifferential colonization level QTL 1 (mouse)9130341840Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse

Markers in Region
STS-Z40910  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387101,787,745 - 101,787,797UniSTSGRCm38
GRCm38925,452,235 - 25,452,291UniSTSGRCm38
MGSCv37925,259,820 - 25,259,876UniSTSGRCm37
MGSCv377108,936,259 - 108,936,311UniSTSGRCm37
Celera922,713,356 - 22,713,412UniSTS
Celera7102,158,589 - 102,158,641UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map7F1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_020957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000214336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl925,361,758 - 25,363,539 (+)Ensembl
GRCm38.p6 Ensembl925,450,462 - 25,452,243 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000111600 Ensembl, ENTREZGENE
MGD MGI:3648503 ENTREZGENE
NCBI Gene 666327 ENTREZGENE
PhenoGen Gm8049 PhenoGen