Gm9436 (predicted gene 9436) - Rat Genome Database

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Gene: Gm9436 (predicted gene 9436) Mus musculus
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Symbol: Gm9436
Name: predicted gene 9436
RGD ID: 1617641
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG668994
Related Functional Gene: Hspa8  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X17,540,575 - 17,542,595 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX17,540,669 - 17,542,523 (-)EnsemblGRCm39 Ensembl
GRCm38X17,674,336 - 17,676,356 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX17,674,430 - 17,676,284 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X17,251,465 - 17,253,482 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X16,831,385 - 16,833,243 (-)NCBIMGSCv36mm8
CeleraX15,292,072 - 15,293,886 (-)NCBICelera
Cytogenetic MapXA1.2NCBI
cM MapX12.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm9436
63 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:86
Interacting mature miRNAs:88
Transcripts:ENSMUST00000120949
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_017822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL844221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000120949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX17,540,669 - 17,542,523 (-)Ensembl
GRCm38.p6 EnsemblX17,674,430 - 17,676,284 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081614 Ensembl, ENTREZGENE
MGD MGI:3645165 ENTREZGENE
NCBI Gene 668994 ENTREZGENE
PhenoGen Gm9436 PhenoGen