Jarid2 (jumonji and AT-rich interaction domain containing 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Jarid2 (jumonji and AT-rich interaction domain containing 2) Mus musculus
Analyze
Symbol: Jarid2
Name: jumonji and AT-rich interaction domain containing 2
RGD ID: 1617619
MGI Page MGI
Description: Enables several functions, including chromatin binding activity; ubiquitin binding activity; and ubiquitin-modified histone reader activity. Contributes to histone H3K27 methyltransferase activity. Involved in facultative heterochromatin formation; negative regulation of transcription by RNA polymerase II; and stem cell differentiation. Acts upstream of or within several processes, including cellular response to leukemia inhibitory factor; hematopoietic or lymphoid organ development; and negative regulation of macromolecule biosynthetic process. Located in nucleus. Part of ESC/E(Z) complex. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and sensory organ. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human JARID2 (jumonji and AT-rich interaction domain containing 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI317256; AU045941; C79929; C79931; Jmj; jumo; jumonji; jumonji, AT rich interactive domain 2; jumonji/ARID domain-containing protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391344,881,817 - 45,075,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1344,882,950 - 45,075,119 (+)EnsemblGRCm39 Ensembl
GRCm381344,730,774 - 44,921,643 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1344,729,474 - 44,921,643 (+)EnsemblGRCm38mm10GRCm38
MGSCv371344,826,272 - 45,016,350 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361344,741,875 - 44,931,953 (+)NCBIMGSCv36mm8
Celera1345,807,063 - 45,996,635 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1321.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
8-Br-cAMP  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzene-1,2,4-triol  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
butan-1-ol  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
camptothecin  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
choline  (EXP)
cisplatin  (EXP,ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
geraniol  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
lipopolysaccharide  (EXP)
menadione  (ISO)
methapyrilene  (ISO)
methotrexate  (EXP,ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
Nor-9-carboxy-delta9-THC  (ISO)
oxaliplatin  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quartz  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
testosterone  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
triphenyl phosphate  (ISO)
tungsten  (EXP)
valproic acid  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal coronary vessel morphology  (IAGP)
abnormal definitive hematopoiesis  (IAGP)
abnormal erythropoiesis  (IAGP)
abnormal fetal cardiomyocyte proliferation  (IAGP)
abnormal heart development  (IAGP)
abnormal heart left ventricle morphology  (IAGP)
abnormal interventricular groove morphology  (IAGP)
abnormal interventricular septum morphology  (IAGP)
abnormal liver morphology  (IAGP)
abnormal liver physiology  (IAGP)
abnormal megakaryocyte progenitor cell morphology  (IAGP)
abnormal myocardial fiber morphology  (IAGP)
abnormal myocardial trabeculae morphology  (IAGP)
abnormal myocardium compact layer morphology  (IAGP)
abnormal myocardium layer morphology  (IAGP)
abnormal nervous system development  (IAGP)
abnormal neural fold formation  (IAGP)
abnormal neural plate morphology  (IAGP)
abnormal neural tube closure  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal splenic cell ratio  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal thoracic cage morphology  (IAGP)
abnormal thymus cell ratio  (IAGP)
anemia  (IAGP)
decreased embryo size  (IAGP)
decreased fetal derived definitive erythrocyte cell number  (IAGP)
decreased hepatocyte number  (IAGP)
delayed neural tube closure  (IAGP)
dilated heart right atrium  (IAGP)
dilated liver sinusoidal space  (IAGP)
distended pericardium  (IAGP)
double outlet right ventricle  (IAGP)
edema  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
fetal growth retardation  (IAGP)
hemorrhage  (IAGP)
hepatic necrosis  (IAGP)
incomplete rostral neuropore closure  (IAGP)
increased body length  (IEA)
increased circulating creatinine level  (IEA)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
liver hypoplasia  (IAGP)
no abnormal phenotype detected  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
prenatal lethality  (IAGP)
respiratory failure  (IAGP)
small liver  (IAGP)
spleen hypoplasia  (IAGP)
thin myocardium  (IAGP)
thymus hypoplasia  (IAGP)
trabecula carnea hypoplasia  (IAGP)
ventricular septal defect  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Induction by left ventricular overload and left ventricular failure of the human Jumonji gene (JARID2) encoding a protein that regulates transcription and reexpression of a protective fetal program. Bovill E, etal., J Thorac Cardiovasc Surg. 2008 Sep;136(3):709-16. doi: 10.1016/j.jtcvs.2008.02.020. Epub 2008 Jun 9.
2. SET for life: biochemical activities and biological functions of SET domain-containing proteins. Herz HM, etal., Trends Biochem Sci. 2013 Dec;38(12):621-39. doi: 10.1016/j.tibs.2013.09.004. Epub 2013 Oct 20.
3. Immune function genes CD99L2, JARID2 and TPO show association with autism spectrum disorder. Ramos PS, etal., Mol Autism. 2012 Jun 9;3(1):4. doi: 10.1186/2040-2392-3-4.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
Additional References at PubMed
PMID:7758946   PMID:8889548   PMID:8894700   PMID:9187083   PMID:9339385   PMID:9376320   PMID:9626493   PMID:9864150   PMID:10349636   PMID:10446263   PMID:10512203   PMID:10725249  
PMID:10807864   PMID:10913339   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11301191   PMID:11598925   PMID:11865068   PMID:12466851   PMID:12477932   PMID:12520002  
PMID:12852854   PMID:12890668   PMID:12904583   PMID:12915229   PMID:14610273   PMID:14681479   PMID:15033168   PMID:15489334   PMID:15504358   PMID:15542826   PMID:15580614   PMID:15618518  
PMID:15680361   PMID:15782199   PMID:15840001   PMID:15870077   PMID:16141072   PMID:16141073   PMID:16458080   PMID:16554359   PMID:16782087   PMID:16900512   PMID:17189626   PMID:17521633  
PMID:17967808   PMID:18287559   PMID:18498724   PMID:18799693   PMID:19010785   PMID:19156209   PMID:19229884   PMID:19521500   PMID:20059953   PMID:20064375   PMID:20064376   PMID:20075857  
PMID:20123894   PMID:20211142   PMID:20412781   PMID:20439489   PMID:20506229   PMID:20549724   PMID:20569692   PMID:21213100   PMID:21402699   PMID:21447557   PMID:21677750   PMID:21731673  
PMID:21732481   PMID:21811233   PMID:21873635   PMID:22110129   PMID:22438827   PMID:23333148   PMID:24146773   PMID:24327761   PMID:24352422   PMID:24374312   PMID:24462204   PMID:24856900  
PMID:25105474   PMID:25645357   PMID:25680957   PMID:26190104   PMID:26523946   PMID:27892467   PMID:28185240   PMID:28461115   PMID:28981838   PMID:29031500   PMID:29232705   PMID:29628311  
PMID:29891551   PMID:30119689   PMID:30186101   PMID:30423295   PMID:30700554   PMID:30973865   PMID:31281901   PMID:31451685   PMID:31578284   PMID:32181346   PMID:32325033   PMID:32507875  
PMID:33887196   PMID:34321999   PMID:34368113   PMID:36924502   PMID:37311757   PMID:38355793   PMID:38394221   PMID:38822427  


Genomics

Comparative Map Data
Jarid2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391344,881,817 - 45,075,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1344,882,950 - 45,075,119 (+)EnsemblGRCm39 Ensembl
GRCm381344,730,774 - 44,921,643 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1344,729,474 - 44,921,643 (+)EnsemblGRCm38mm10GRCm38
MGSCv371344,826,272 - 45,016,350 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361344,741,875 - 44,931,953 (+)NCBIMGSCv36mm8
Celera1345,807,063 - 45,996,635 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1321.66NCBI
JARID2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38615,246,069 - 15,522,042 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl615,246,069 - 15,522,042 (+)EnsemblGRCh38hg38GRCh38
GRCh37615,246,300 - 15,522,273 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36615,354,506 - 15,630,232 (+)NCBINCBI36Build 36hg18NCBI36
Build 34615,354,505 - 15,630,232NCBI
Celera616,484,424 - 16,760,206 (+)NCBICelera
Cytogenetic Map6p22.3NCBI
HuRef615,193,519 - 15,469,507 (+)NCBIHuRef
CHM1_1615,248,791 - 15,524,763 (+)NCBICHM1_1
T2T-CHM13v2.0615,119,264 - 15,395,212 (+)NCBIT2T-CHM13v2.0
Jarid2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81719,983,217 - 20,163,598 (-)NCBIGRCr8
mRatBN7.21719,777,487 - 19,957,696 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1719,777,266 - 19,955,690 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01720,183,440 - 20,365,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1720,184,245 - 20,364,714 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01722,193,534 - 22,368,495 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1719,477,856 - 19,658,598 (-)NCBICelera
Cytogenetic Map17p14NCBI
Jarid2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955590384,817 - 626,684 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955590383,810 - 512,854 (-)NCBIChiLan1.0ChiLan1.0
JARID2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2529,909,788 - 30,187,083 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1625,898,789 - 26,175,921 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0615,100,415 - 15,376,505 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1615,466,681 - 15,740,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl615,466,050 - 15,739,170 (+)Ensemblpanpan1.1panPan2
JARID2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13514,476,656 - 14,737,535 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3514,445,914 - 14,736,158 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3514,425,042 - 14,685,518 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03514,573,294 - 14,834,551 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3514,540,390 - 14,833,877 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13514,399,422 - 14,659,727 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03514,450,826 - 14,711,538 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03515,776,504 - 16,037,565 (+)NCBIUU_Cfam_GSD_1.0
Jarid2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049469,944,101 - 10,164,788 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365521,566,788 - 1,785,490 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365521,566,382 - 1,786,837 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JARID2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl711,359,230 - 11,601,401 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1711,358,243 - 11,601,715 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2711,977,677 - 12,191,165 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JARID2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11756,651,752 - 56,928,650 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1756,651,596 - 56,928,126 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604415,284,556 - 15,562,330 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jarid2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475610,933,717 - 11,199,077 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475610,932,148 - 11,079,609 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Jarid2
5983 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6238
Count of miRNA genes:955
Interacting mature miRNAs:1410
Transcripts:ENSMUST00000044608, ENSMUST00000172581, ENSMUST00000172708, ENSMUST00000172830, ENSMUST00000172924, ENSMUST00000172977, ENSMUST00000173003, ENSMUST00000173246, ENSMUST00000173367, ENSMUST00000173704, ENSMUST00000173906, ENSMUST00000174068, ENSMUST00000174086, ENSMUST00000174394, ENSMUST00000174557, ENSMUST00000174683
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
10402494Igmsc1_mimmunoglobulin M secreting cells 1 (mouse)Not determined131716854544918560Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
12738427Lfibq24_mliver fibrosis QTL 24 (mouse)134425810752758667Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse

Markers in Region
RH126766  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,920,740 - 44,920,970UniSTSGRCm38
MGSCv371345,016,109 - 45,016,339UniSTSGRCm37
Celera1345,996,394 - 45,996,624UniSTS
Cytogenetic Map13A5UniSTS
cM Map1327.0UniSTS
Whitehead/MRC_RH21839.43UniSTS
C79931  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,920,765 - 44,920,862UniSTSGRCm38
MGSCv371345,016,134 - 45,016,231UniSTSGRCm37
Celera1345,996,419 - 45,996,516UniSTS
Cytogenetic Map13A5UniSTS
cM Map1327.0UniSTS
Whitehead/MRC_RH13466.07UniSTS
D31967  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,920,006 - 44,920,108UniSTSGRCm38
MGSCv371345,015,375 - 45,015,477UniSTSGRCm37
Celera1345,995,660 - 45,995,762UniSTS
Cytogenetic Map13A5UniSTS
cM Map1327.0UniSTS
Whitehead_YAC13 UniSTS
D13Mit179  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,764,993 - 44,765,084UniSTSGRCm38
MGSCv371344,860,362 - 44,860,453UniSTSGRCm37
Celera1345,841,171 - 45,841,252UniSTS
Cytogenetic Map13A5UniSTS
cM Map1330.0UniSTS
Whitehead Genetic1315.3UniSTS
Whitehead_YAC13 UniSTS
AU045941  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,921,424 - 44,921,574UniSTSGRCm38
MGSCv371345,016,793 - 45,016,943UniSTSGRCm37
Celera1345,997,078 - 45,997,228UniSTS
Cytogenetic Map13A5UniSTS
cM Map1327.0UniSTS
Whitehead/MRC_RH13466.13UniSTS
C77215  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,756,329 - 44,756,636UniSTSGRCm38
MGSCv371344,851,698 - 44,852,005UniSTSGRCm37
Celera1345,832,481 - 45,832,788UniSTS
Cytogenetic Map13A5UniSTS
cM Map1327.0UniSTS
Whitehead/MRC_RH13464.29UniSTS
Jarid2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13A5UniSTS
cM Map1327.0UniSTS
RH126121  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,756,684 - 44,756,888UniSTSGRCm38
MGSCv371344,852,053 - 44,852,257UniSTSGRCm37
Celera1345,832,836 - 45,833,040UniSTS
Cytogenetic Map13A5UniSTS
cM Map1327.0UniSTS
Whitehead/MRC_RH13461.56UniSTS
RH126171  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,805,995 - 44,806,231UniSTSGRCm38
MGSCv371344,901,364 - 44,901,600UniSTSGRCm37
Celera1345,882,127 - 45,882,363UniSTS
Cytogenetic Map13A5UniSTS
cM Map1329.0UniSTS
Whitehead/MRC_RH13463.99UniSTS
AU021389  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,757,086 - 44,757,211UniSTSGRCm38
MGSCv371344,852,455 - 44,852,580UniSTSGRCm37
Celera1345,833,238 - 45,833,363UniSTS
Cytogenetic Map13A5UniSTS
cM Map1327.0UniSTS
Whitehead/MRC_RH13464.29UniSTS
D13Ertd787e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,757,063 - 44,757,263UniSTSGRCm38
MGSCv371344,852,432 - 44,852,632UniSTSGRCm37
Celera1345,833,215 - 45,833,415UniSTS
Cytogenetic Map13A5UniSTS
cM Map1329.0UniSTS
JARID2_3393  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,921,028 - 44,921,655UniSTSGRCm38
MGSCv371345,016,397 - 45,017,024UniSTSGRCm37
Celera1345,996,682 - 45,997,309UniSTS
Cytogenetic Map13A5UniSTS
jmj  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381344,793,899 - 44,794,271UniSTSGRCm38
MGSCv371344,889,268 - 44,889,640UniSTSGRCm37
Celera1345,870,028 - 45,870,402UniSTS
Cytogenetic Map13A5UniSTS
cM Map1327.0UniSTS
Jarid2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13A5UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001205043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001205044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC166074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC170597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D31967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000044608   ⟹   ENSMUSP00000037774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,884,299 - 45,074,471 (+)Ensembl
GRCm38.p6 Ensembl1344,730,823 - 44,920,995 (+)Ensembl
Ensembl Acc Id: ENSMUST00000172581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,887,516 - 45,027,790 (+)Ensembl
GRCm38.p6 Ensembl1344,734,040 - 44,874,314 (+)Ensembl
Ensembl Acc Id: ENSMUST00000172708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,884,335 - 45,027,827 (+)Ensembl
GRCm38.p6 Ensembl1344,730,859 - 44,874,351 (+)Ensembl
Ensembl Acc Id: ENSMUST00000172830   ⟹   ENSMUSP00000133653
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,883,271 - 44,976,986 (+)Ensembl
GRCm38.p6 Ensembl1344,729,795 - 44,823,510 (+)Ensembl
Ensembl Acc Id: ENSMUST00000172924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,885,335 - 45,027,818 (+)Ensembl
GRCm38.p6 Ensembl1344,731,859 - 44,874,342 (+)Ensembl
Ensembl Acc Id: ENSMUST00000172977   ⟹   ENSMUSP00000134276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,885,074 - 45,038,224 (+)Ensembl
GRCm38.p6 Ensembl1344,731,598 - 44,884,748 (+)Ensembl
Ensembl Acc Id: ENSMUST00000173003   ⟹   ENSMUSP00000134302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,994,259 - 45,049,957 (+)Ensembl
GRCm38.p6 Ensembl1344,840,783 - 44,896,481 (+)Ensembl
Ensembl Acc Id: ENSMUST00000173246   ⟹   ENSMUSP00000134205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,884,747 - 45,075,119 (+)Ensembl
GRCm38.p6 Ensembl1344,731,271 - 44,921,643 (+)Ensembl
Ensembl Acc Id: ENSMUST00000173367   ⟹   ENSMUSP00000134658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,884,314 - 45,056,734 (+)Ensembl
GRCm38.p6 Ensembl1344,730,838 - 44,903,258 (+)Ensembl
Ensembl Acc Id: ENSMUST00000173704   ⟹   ENSMUSP00000134675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,884,250 - 45,073,584 (+)Ensembl
GRCm38.p6 Ensembl1344,730,774 - 44,920,108 (+)Ensembl
Ensembl Acc Id: ENSMUST00000173906   ⟹   ENSMUSP00000134630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,994,167 - 45,067,795 (+)Ensembl
GRCm38.p6 Ensembl1344,840,691 - 44,914,319 (+)Ensembl
Ensembl Acc Id: ENSMUST00000174068   ⟹   ENSMUSP00000134593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,883,011 - 45,001,816 (+)Ensembl
GRCm38.p6 Ensembl1344,729,535 - 44,848,340 (+)Ensembl
Ensembl Acc Id: ENSMUST00000174086   ⟹   ENSMUSP00000133812
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,884,763 - 44,976,879 (+)Ensembl
GRCm38.p6 Ensembl1344,731,287 - 44,823,403 (+)Ensembl
Ensembl Acc Id: ENSMUST00000174394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,882,950 - 44,885,050 (+)Ensembl
GRCm38.p6 Ensembl1344,729,474 - 44,731,574 (+)Ensembl
Ensembl Acc Id: ENSMUST00000174557
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,884,844 - 45,038,504 (+)Ensembl
GRCm38.p6 Ensembl1344,731,368 - 44,885,028 (+)Ensembl
Ensembl Acc Id: ENSMUST00000174683
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1344,884,846 - 45,075,116 (+)Ensembl
GRCm38.p6 Ensembl1344,731,370 - 44,921,640 (+)Ensembl
RefSeq Acc Id: NM_001205043   ⟹   NP_001191972
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391344,884,809 - 45,075,114 (+)NCBI
GRCm381344,731,271 - 44,921,643 (+)NCBI
Celera1345,806,934 - 45,997,297 (+)ENTREZGENE
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001205044   ⟹   NP_001191973
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391344,884,250 - 45,075,119 (+)NCBI
GRCm381344,730,774 - 44,921,643 (+)NCBI
Celera1345,806,934 - 45,997,297 (+)ENTREZGENE
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001360281   ⟹   NP_001347210
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391344,884,747 - 45,075,119 (+)NCBI
GRCm381344,731,271 - 44,921,643 (+)NCBI
Sequence:
RefSeq Acc Id: NM_021878   ⟹   NP_068678
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391344,884,250 - 45,075,119 (+)NCBI
GRCm381344,730,774 - 44,921,643 (+)NCBI
MGSCv371344,826,272 - 45,016,350 (+)RGD
Celera1345,806,934 - 45,997,297 (+)ENTREZGENE
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006516858   ⟹   XP_006516921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391344,978,099 - 45,074,744 (+)NCBI
GRCm381344,831,372 - 44,921,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006516859   ⟹   XP_006516922
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391344,886,186 - 45,074,744 (+)NCBI
GRCm381344,733,673 - 44,921,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006516860   ⟹   XP_006516923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391344,994,297 - 45,074,744 (+)NCBI
GRCm381344,840,820 - 44,921,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157863   ⟹   XP_036013756
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391344,884,233 - 45,074,744 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157864   ⟹   XP_036013757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391344,881,817 - 45,074,744 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001191972 (Get FASTA)   NCBI Sequence Viewer  
  NP_001191973 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347210 (Get FASTA)   NCBI Sequence Viewer  
  NP_068678 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516921 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516922 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516923 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013756 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013757 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH03374 (Get FASTA)   NCBI Sequence Viewer  
  AAH52444 (Get FASTA)   NCBI Sequence Viewer  
  AAH60695 (Get FASTA)   NCBI Sequence Viewer  
  AAI15759 (Get FASTA)   NCBI Sequence Viewer  
  BAA06736 (Get FASTA)   NCBI Sequence Viewer  
  BAC32264 (Get FASTA)   NCBI Sequence Viewer  
  BAE27780 (Get FASTA)   NCBI Sequence Viewer  
  BAE37641 (Get FASTA)   NCBI Sequence Viewer  
  EDL41007 (Get FASTA)   NCBI Sequence Viewer  
  EDL41008 (Get FASTA)   NCBI Sequence Viewer  
  EDL41009 (Get FASTA)   NCBI Sequence Viewer  
  EDL41010 (Get FASTA)   NCBI Sequence Viewer  
  EDL41011 (Get FASTA)   NCBI Sequence Viewer  
  EDL41012 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000037774
  ENSMUSP00000037774.8
  ENSMUSP00000133653.2
  ENSMUSP00000133812.2
  ENSMUSP00000134205
  ENSMUSP00000134205.2
  ENSMUSP00000134276.2
  ENSMUSP00000134302.2
  ENSMUSP00000134593.2
  ENSMUSP00000134630
  ENSMUSP00000134630.2
  ENSMUSP00000134658.2
  ENSMUSP00000134675
  ENSMUSP00000134675.2
GenBank Protein Q62315 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_068678   ⟸   NM_021878
- Peptide Label: isoform 1
- UniProtKB: Q3UHS7 (UniProtKB/Swiss-Prot),   Q3TPU4 (UniProtKB/Swiss-Prot),   Q99LD1 (UniProtKB/Swiss-Prot),   Q62315 (UniProtKB/Swiss-Prot),   G3UZT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001191973   ⟸   NM_001205044
- Peptide Label: isoform 1
- UniProtKB: Q3UHS7 (UniProtKB/Swiss-Prot),   Q3TPU4 (UniProtKB/Swiss-Prot),   Q99LD1 (UniProtKB/Swiss-Prot),   Q62315 (UniProtKB/Swiss-Prot),   G3UZT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001191972   ⟸   NM_001205043
- Peptide Label: isoform 1
- UniProtKB: Q3UHS7 (UniProtKB/Swiss-Prot),   Q3TPU4 (UniProtKB/Swiss-Prot),   Q99LD1 (UniProtKB/Swiss-Prot),   Q62315 (UniProtKB/Swiss-Prot),   G3UZT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516922   ⟸   XM_006516859
- Peptide Label: isoform X3
- UniProtKB: Q1LZL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516921   ⟸   XM_006516858
- Peptide Label: isoform X2
- UniProtKB: G3UZT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516923   ⟸   XM_006516860
- Peptide Label: isoform X3
- UniProtKB: Q1LZL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347210   ⟸   NM_001360281
- Peptide Label: isoform 2
- UniProtKB: Q1LZL9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000133653   ⟸   ENSMUST00000172830
Ensembl Acc Id: ENSMUSP00000134276   ⟸   ENSMUST00000172977
Ensembl Acc Id: ENSMUSP00000133812   ⟸   ENSMUST00000174086
Ensembl Acc Id: ENSMUSP00000134593   ⟸   ENSMUST00000174068
Ensembl Acc Id: ENSMUSP00000134205   ⟸   ENSMUST00000173246
Ensembl Acc Id: ENSMUSP00000134658   ⟸   ENSMUST00000173367
Ensembl Acc Id: ENSMUSP00000134302   ⟸   ENSMUST00000173003
Ensembl Acc Id: ENSMUSP00000134675   ⟸   ENSMUST00000173704
Ensembl Acc Id: ENSMUSP00000134630   ⟸   ENSMUST00000173906
Ensembl Acc Id: ENSMUSP00000037774   ⟸   ENSMUST00000044608
RefSeq Acc Id: XP_036013757   ⟸   XM_036157864
- Peptide Label: isoform X1
- UniProtKB: Q62315 (UniProtKB/Swiss-Prot),   Q3UHS7 (UniProtKB/Swiss-Prot),   Q3TPU4 (UniProtKB/Swiss-Prot),   Q99LD1 (UniProtKB/Swiss-Prot),   G3UZT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013756   ⟸   XM_036157863
- Peptide Label: isoform X1
- UniProtKB: Q62315 (UniProtKB/Swiss-Prot),   Q3UHS7 (UniProtKB/Swiss-Prot),   Q3TPU4 (UniProtKB/Swiss-Prot),   Q99LD1 (UniProtKB/Swiss-Prot),   G3UZT8 (UniProtKB/TrEMBL)
Protein Domains
ARID   JmjC   JmjN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62315-F1-model_v2 AlphaFold Q62315 1-1234 view protein structure

Promoters
RGD ID:8680212
Promoter ID:EPDNEW_M18137
Type:initiation region
Name:Jarid2_1
Description:Mus musculus jumonji, AT rich interactive domain 2 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18138  EPDNEW_M18139  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381344,731,333 - 44,731,393EPDNEW
RGD ID:8680214
Promoter ID:EPDNEW_M18138
Type:multiple initiation site
Name:Jarid2_2
Description:Mus musculus jumonji, AT rich interactive domain 2 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18137  EPDNEW_M18139  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381344,731,577 - 44,731,637EPDNEW
RGD ID:6824078
Promoter ID:MM_KWN:13951
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000044608,   NM_021878,   UC007QGR.1,   UC007QGT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361344,825,481 - 44,827,137 (+)MPROMDB
RGD ID:6847041
Promoter ID:MM_ACW:13073
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:JARID2.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361344,828,606 - 44,829,457 (+)MPROMDB
RGD ID:8680216
Promoter ID:EPDNEW_M18139
Type:initiation region
Name:Jarid2_3
Description:Mus musculus jumonji, AT rich interactive domain 2 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18137  EPDNEW_M18138  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381344,840,774 - 44,840,834EPDNEW
RGD ID:6824079
Promoter ID:MM_KWN:13953
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:UC007QGV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361344,935,471 - 44,935,971 (+)MPROMDB
RGD ID:6848623
Promoter ID:MM_TRO:2487
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:MTR003033.13.816.12
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361344,997,831 - 44,998,331 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104813 AgrOrtholog
Ensembl Genes ENSMUSG00000038518 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044608 ENTREZGENE
  ENSMUST00000044608.14 UniProtKB/Swiss-Prot
  ENSMUST00000172830.8 UniProtKB/TrEMBL
  ENSMUST00000172977.8 UniProtKB/TrEMBL
  ENSMUST00000173003.2 UniProtKB/TrEMBL
  ENSMUST00000173246 ENTREZGENE
  ENSMUST00000173246.8 UniProtKB/Swiss-Prot
  ENSMUST00000173367.8 UniProtKB/TrEMBL
  ENSMUST00000173704 ENTREZGENE
  ENSMUST00000173704.8 UniProtKB/Swiss-Prot
  ENSMUST00000173906 ENTREZGENE
  ENSMUST00000173906.3 UniProtKB/TrEMBL
  ENSMUST00000174068.8 UniProtKB/TrEMBL
  ENSMUST00000174086.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cupin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARID_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JmjC_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JmjN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C5HC2 UniProtKB/Swiss-Prot
KEGG Report mmu:16468 UniProtKB/Swiss-Prot
MGD MGI:104813 ENTREZGENE
NCBI Gene 16468 ENTREZGENE
PANTHER LYSINE-SPECIFIC DEMETHYLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN JUMONJI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ARID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JmjC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JmjN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C5HC2 UniProtKB/Swiss-Prot
PhenoGen Jarid2 PhenoGen
PROSITE ARID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JMJC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JMJN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ARID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRIGHT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JmjC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JmjN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF46774 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3UXE0_MOUSE UniProtKB/TrEMBL
  G3UXT1_MOUSE UniProtKB/TrEMBL
  G3UYY7_MOUSE UniProtKB/TrEMBL
  G3UZ12_MOUSE UniProtKB/TrEMBL
  G3UZQ8_MOUSE UniProtKB/TrEMBL
  G3UZT8 ENTREZGENE, UniProtKB/TrEMBL
  G3UZW3_MOUSE UniProtKB/TrEMBL
  JARD2_MOUSE UniProtKB/Swiss-Prot
  Q1LZL9 ENTREZGENE, UniProtKB/TrEMBL
  Q3TPU4 ENTREZGENE
  Q3UHS7 ENTREZGENE
  Q62315 ENTREZGENE
  Q99LD1 ENTREZGENE
UniProt Secondary Q3TPU4 UniProtKB/Swiss-Prot
  Q3UHS7 UniProtKB/Swiss-Prot
  Q99LD1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-20 Jarid2  jumonji and AT-rich interaction domain containing 2  Jarid2  jumonji, AT rich interactive domain 2  Symbol and/or name change 5135510 APPROVED