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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Forebrain Defects | | ISO | RGD:1352791 | 8554872 | ClinVar Annotator: match by null | ClinVar | PMID:11062482, PMID:12073012 | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Forebrain Defects | | ISO | RGD:1352791 | 8554872 | ClinVar Annotator: match by null | ClinVar | PMID:11062482, PMID:12073012 | |
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1. | Lonardo E, etal., Stem Cells. 2010 Aug;28(8):1326-37. doi: 10.1002/stem.458. |
2. | OMIM Disease Annotation Pipeline |
3. | Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
4. | RGD automated import pipeline |
5. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | RGD automated import pipeline for gene-chemical interactions |
7. | Wang B, etal., Int J Cardiol. 2011 Jan 21;146(2):225-7. doi: 10.1016/j.ijcard.2009.08.046. Epub 2009 Oct 24. |
8. | Xing PX, etal., Cancer Res. 2004 Jun 1;64(11):4018-23. |
PMID:2792079 | PMID:7588062 | PMID:7881126 | PMID:7916676 | PMID:8006041 | PMID:8588926 | PMID:8661720 | PMID:9013573 | PMID:9053319 | PMID:9195995 | PMID:9576836 | PMID:9790191 |
PMID:9811942 | PMID:9876177 | PMID:10349636 | PMID:10477299 | PMID:10640699 | PMID:10772805 | PMID:10922068 | PMID:10985852 | PMID:11042159 | PMID:11076861 | PMID:11133982 | PMID:11171400 |
PMID:11217851 | PMID:11389842 | PMID:11412024 | PMID:11418863 | PMID:11807813 | PMID:11820816 | PMID:11825688 | PMID:11857442 | PMID:11992720 | PMID:12052855 | PMID:12091315 | PMID:12093914 |
PMID:12140191 | PMID:12381664 | PMID:12447384 | PMID:12466851 | PMID:12471260 | PMID:12477932 | PMID:12520002 | PMID:12581525 | PMID:12904583 | PMID:14502576 | PMID:14511481 | PMID:14581455 |
PMID:14610273 | PMID:14623818 | PMID:14633973 | PMID:14651936 | PMID:14668413 | PMID:14966532 | PMID:15277382 | PMID:15302604 | PMID:15601854 | PMID:15737733 | PMID:15797385 | PMID:15829518 |
PMID:15870281 | PMID:15897912 | PMID:16049342 | PMID:16141072 | PMID:16141073 | PMID:16176936 | PMID:16256739 | PMID:16291788 | PMID:16291790 | PMID:16368929 | PMID:16481355 | PMID:16580991 |
PMID:16728477 | PMID:16831833 | PMID:16887818 | PMID:16950123 | PMID:17030617 | PMID:17360443 | PMID:17389379 | PMID:17568773 | PMID:17697936 | PMID:17699604 | PMID:17913787 | PMID:17936261 |
PMID:17941089 | PMID:17967808 | PMID:17991893 | PMID:18028899 | PMID:18089557 | PMID:18171685 | PMID:18241853 | PMID:18268105 | PMID:18337457 | PMID:18425773 | PMID:18697220 | PMID:18772886 |
PMID:18773496 | PMID:18781635 | PMID:18799693 | PMID:18974875 | PMID:19001664 | PMID:19013461 | PMID:19152270 | PMID:19153222 | PMID:19247965 | PMID:19574549 | PMID:19605690 | PMID:19716815 |
PMID:19834060 | PMID:20007774 | PMID:20211162 | PMID:20346354 | PMID:20359476 | PMID:20708584 | PMID:20876643 | PMID:21267068 | PMID:21445260 | PMID:21664901 | PMID:21731673 | PMID:21862554 |
PMID:21873635 | PMID:21896659 | PMID:21982233 | PMID:22202673 | PMID:22542493 | PMID:22560297 | PMID:22682244 | PMID:22872153 | PMID:23034635 | PMID:23129614 | PMID:23473982 | PMID:23552073 |
PMID:23651855 | PMID:23747598 | PMID:24307303 | PMID:24680892 | PMID:24805056 | PMID:24859004 | PMID:24952961 | PMID:25446535 | PMID:25588837 | PMID:25907228 | PMID:26059540 | PMID:26324715 |
PMID:26429739 | PMID:26534985 | PMID:26654129 | PMID:26811383 | PMID:27521049 | PMID:27586544 | PMID:27687577 | PMID:27881714 | PMID:28118982 | PMID:28839193 | PMID:29168693 | PMID:29506220 |
PMID:31341279 | PMID:32876567 |
Tdgf1 (Mus musculus - house mouse) |
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TDGF1 (Homo sapiens - human) |
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Tdgf1 (Rattus norvegicus - Norway rat) |
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Tdgf1 (Chinchilla lanigera - long-tailed chinchilla) |
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TDGF1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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TDGF1 (Canis lupus familiaris - dog) |
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Tdgf1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TDGF1 (Sus scrofa - pig) |
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TDGF1 (Chlorocebus sabaeus - African green monkey) |
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Tdgf1 (Heterocephalus glaber - naked mole-rat) |
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M87321 |
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UniSTS:236264 |
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Tdgf1 |
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Tdgf1 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_011562 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_017313275 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC118727 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC139378 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK133730 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK163969 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC052646 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466621 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CJ074826 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
M87321 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
X93470 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
X94083 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000035075 ⟹ ENSMUSP00000035075 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000197460 ⟹ ENSMUSP00000143394 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000199196 ⟹ ENSMUSP00000142397 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000199782 ⟹ ENSMUSP00000143669 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_011562 ⟹ NP_035692 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017313275 ⟹ XP_017168764 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_035692 | (Get FASTA) | NCBI Sequence Viewer |
XP_017168764 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAA37459 | (Get FASTA) | NCBI Sequence Viewer |
AAH52646 | (Get FASTA) | NCBI Sequence Viewer | |
BAE21807 | (Get FASTA) | NCBI Sequence Viewer | |
CAA63827 | (Get FASTA) | NCBI Sequence Viewer | |
EDL08985 | (Get FASTA) | NCBI Sequence Viewer | |
P51865 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_035692 ⟸ NM_011562 |
- Peptide Label: | precursor |
- UniProtKB: | Q3UZP8 (UniProtKB/TrEMBL), Q7TQ06 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017168764 ⟸ XM_017313275 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000143394 ⟸ ENSMUST00000197460 |
RefSeq Acc Id: | ENSMUSP00000035075 ⟸ ENSMUST00000035075 |
RefSeq Acc Id: | ENSMUSP00000143669 ⟸ ENSMUST00000199782 |
RefSeq Acc Id: | ENSMUSP00000142397 ⟸ ENSMUST00000199196 |
RGD ID: | 6848484 | ||||||||
Promoter ID: | MM_ACW:52163 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | ES_Cell | ||||||||
Transcripts: | TDGF1.ESEP07 | ||||||||
Position: |
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RGD ID: | 6845237 | ||||||||
Promoter ID: | MM_KWN:58950 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | ES_Cell | ||||||||
Transcripts: | ENSMUST00000035075, NM_011562 | ||||||||
Position: |
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RGD ID: | 8671042 | ||||||||
Promoter ID: | EPDNEW_M13552 | ||||||||
Type: | initiation region | ||||||||
Name: | Tdgf1_1 | ||||||||
Description: | Mus musculus teratocarcinoma-derived growth factor 1 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:98658 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000032494 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSMUSP00000035075 | ENTREZGENE, UniProtKB/TrEMBL |
ENSMUSP00000142397 | UniProtKB/TrEMBL | |
ENSMUSP00000143394 | UniProtKB/TrEMBL | |
ENSMUSP00000143669 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSMUST00000035075 | ENTREZGENE, UniProtKB/TrEMBL |
ENSMUST00000197460 | UniProtKB/TrEMBL | |
ENSMUST00000199196 | UniProtKB/TrEMBL | |
ENSMUST00000199782 | UniProtKB/TrEMBL | |
InterPro | Cripto_growth_factor | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Cryptic/Cripto_CFC-dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
EGF-like_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:21667 | UniProtKB/TrEMBL |
MGD | MGI:98658 | ENTREZGENE |
NCBI Gene | 21667 | ENTREZGENE |
Pfam | CFC | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Tdgf1 | PhenoGen |
PIRSF | Cripto_growth_factor | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | EGF_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
EGF_3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniGene | Mm.5090 | ENTREZGENE |
UniProt | A0A0G2JDJ9_MOUSE | UniProtKB/TrEMBL |
A0A0G2JG22_MOUSE | UniProtKB/TrEMBL | |
A0A0G2JGR6_MOUSE | UniProtKB/TrEMBL | |
P51865 | ENTREZGENE | |
Q3UZP8 | ENTREZGENE, UniProtKB/TrEMBL | |
Q7TQ06 | ENTREZGENE, UniProtKB/TrEMBL | |
TDGF1_MOUSE | UniProtKB/Swiss-Prot |