Copg1 (coatomer protein complex, subunit gamma 1) - Rat Genome Database

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Gene: Copg1 (coatomer protein complex, subunit gamma 1) Mus musculus
Analyze
Symbol: Copg1
Name: coatomer protein complex, subunit gamma 1
RGD ID: 1617573
MGI Page MGI
Description: Predicted to enable structural molecule activity. Predicted to be involved in several processes, including Golgi vesicle transport; establishment of Golgi localization; and organelle transport along microtubule. Predicted to act upstream of or within protein transport. Located in Golgi membrane. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; sensory organ; and skeleton. Orthologous to human COPG1 (COPI coat complex subunit gamma 1).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AU019265; BC056168; Co; coatomer subunit gamma; coatomer subunit gamma-1; Copg; D6Ertd71; D6Ertd71e; D6Wsu16; D6Wsu16e; gamma-1-coat protein; gamma-1-COP; gamma-coat protein; gamma-COP; MGC66965
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,864,801 - 87,890,577 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,864,796 - 87,890,577 (+)EnsemblGRCm39 Ensembl
GRCm38687,887,819 - 87,913,595 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,887,814 - 87,913,595 (+)EnsemblGRCm38mm10GRCm38
MGSCv37687,837,934 - 87,863,589 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36687,853,581 - 87,879,236 (+)NCBIMGSCv36mm8
Celera689,824,999 - 89,850,681 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9811942   PMID:10349636   PMID:10725249   PMID:10788617   PMID:10922068   PMID:11018518   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932  
PMID:12520002   PMID:14610273   PMID:14681479   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17360540   PMID:18554416   PMID:18799693   PMID:19656848   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:24457600   PMID:25044020   PMID:25438880   PMID:28378742   PMID:29437892   PMID:30335684   PMID:30457570   PMID:30550785   PMID:32325033   PMID:33529166   PMID:35364055  
PMID:36417873  


Genomics

Comparative Map Data
Copg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,864,801 - 87,890,577 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,864,796 - 87,890,577 (+)EnsemblGRCm39 Ensembl
GRCm38687,887,819 - 87,913,595 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,887,814 - 87,913,595 (+)EnsemblGRCm38mm10GRCm38
MGSCv37687,837,934 - 87,863,589 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36687,853,581 - 87,879,236 (+)NCBIMGSCv36mm8
Celera689,824,999 - 89,850,681 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
COPG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,249,606 - 129,277,773 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3129,249,606 - 129,277,773 (+)EnsemblGRCh38hg38GRCh38
GRCh373128,968,449 - 128,996,616 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,451,143 - 130,479,306 (+)NCBINCBI36Build 36hg18NCBI36
Build 343130,451,150 - 130,479,312NCBI
Celera3127,399,234 - 127,427,322 (+)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3126,353,590 - 126,381,662 (+)NCBIHuRef
CHM1_13128,931,675 - 128,959,852 (+)NCBICHM1_1
T2T-CHM13v2.03131,994,406 - 132,022,572 (+)NCBIT2T-CHM13v2.0
Copg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24120,366,540 - 120,392,502 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,366,542 - 120,415,616 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,839,212 - 125,863,727 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04121,613,989 - 121,638,505 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04120,238,238 - 120,262,752 (+)NCBIRnor_WKY
Rnor_6.04119,815,041 - 119,840,997 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,815,139 - 119,864,114 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04185,062,623 - 185,088,579 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,109,613 - 122,134,049 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4109,326,188 - 109,350,625 (+)NCBICelera
Cytogenetic Map4q34NCBI
Copg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542913,578,494 - 13,616,463 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542913,582,676 - 13,615,801 (+)NCBIChiLan1.0ChiLan1.0
COPG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan13127,190,069 - 127,218,271 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,310,558 - 126,338,726 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,664,856 - 133,693,633 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,664,856 - 133,694,849 (+)Ensemblpanpan1.1panPan2
COPG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1202,832,150 - 2,860,356 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl202,832,198 - 2,860,320 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha202,869,065 - 2,897,262 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0202,852,770 - 2,880,977 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl202,844,919 - 2,880,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1202,572,649 - 2,600,856 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0202,895,653 - 2,923,949 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0202,860,084 - 2,888,263 (-)NCBIUU_Cfam_GSD_1.0
Copg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,196,871 - 20,218,086 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936798238,571 - 260,083 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936798238,741 - 259,962 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COPG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,672,733 - 71,730,399 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,707,097 - 71,730,402 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,410,094 - 79,420,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COPG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,787,002 - 51,812,031 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2251,787,340 - 51,812,026 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041114,585,201 - 114,613,333 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Copg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624872299,625 - 320,974 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Copg1
930 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1397
Count of miRNA genes:704
Interacting mature miRNAs:869
Transcripts:ENSMUST00000049966, ENSMUST00000113607, ENSMUST00000127614, ENSMUST00000132938, ENSMUST00000137717, ENSMUST00000149409, ENSMUST00000149907, ENSMUST00000152175
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
15039373Adip28_madiposity 28 (mouse)65628519490285194Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65628519490285194Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65842456692424693Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65851741692517416Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66003466394034782Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66346172197461888Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67129960593441074Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671552042105552160Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675424566104480516Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67552133992584431Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67552133994202936Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67552133994202936Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675584287109584431Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675693484109693678Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676440930110441074Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67707698389976982Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67797698396976961Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681476981102176961Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684099474118099474Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686783787113521563Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse

Markers in Region
RH136550  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,912,205 - 87,912,399UniSTSGRCm38
MGSCv37687,862,199 - 87,862,393UniSTSGRCm37
Celera689,849,291 - 89,849,485UniSTS
Cytogenetic Map6D1UniSTS
cM Map638.0UniSTS
D6Ertd71e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,913,276 - 87,913,523UniSTSGRCm38
MGSCv37687,863,270 - 87,863,517UniSTSGRCm37
Celera689,850,362 - 89,850,609UniSTS
Cytogenetic Map6D1UniSTS
cM Map638.0UniSTS
Copg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
cM Map638.0UniSTS
RH125682  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,912,335 - 87,912,505UniSTSGRCm38
MGSCv37687,862,329 - 87,862,499UniSTSGRCm37
Celera689,849,421 - 89,849,591UniSTS
Cytogenetic Map6D1UniSTS
cM Map638.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_017477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_201244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF187079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000049966   ⟹   ENSMUSP00000050858
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,864,910 - 87,867,741 (+)Ensembl
GRCm38.p6 Ensembl687,887,928 - 87,890,759 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113607   ⟹   ENSMUSP00000109237
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,864,796 - 87,890,577 (+)Ensembl
GRCm38.p6 Ensembl687,887,814 - 87,913,595 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127614
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,885,754 - 87,887,036 (+)Ensembl
GRCm38.p6 Ensembl687,908,772 - 87,910,054 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132938
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,874,785 - 87,879,748 (+)Ensembl
GRCm38.p6 Ensembl687,897,803 - 87,902,766 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137717
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,864,939 - 87,871,944 (+)Ensembl
GRCm38.p6 Ensembl687,887,957 - 87,894,962 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149409
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,872,438 - 87,881,849 (+)Ensembl
GRCm38.p6 Ensembl687,895,456 - 87,904,867 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149907
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,872,979 - 87,889,512 (+)Ensembl
GRCm38.p6 Ensembl687,895,997 - 87,912,530 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152175
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,872,098 - 87,873,084 (+)Ensembl
GRCm38.p6 Ensembl687,895,116 - 87,896,102 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203240
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,864,922 - 87,870,789 (+)Ensembl
GRCm38.p6 Ensembl687,887,940 - 87,893,807 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205234
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,870,925 - 87,879,336 (+)Ensembl
GRCm38.p6 Ensembl687,893,943 - 87,902,354 (+)Ensembl
RefSeq Acc Id: NM_017477   ⟹   NP_059505
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,864,922 - 87,890,577 (+)NCBI
GRCm38687,887,940 - 87,913,595 (+)NCBI
MGSCv37687,837,934 - 87,863,589 (+)RGD
Celera689,824,999 - 89,850,681 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_201244   ⟹   NP_957696
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,864,954 - 87,867,741 (+)NCBI
GRCm38687,887,972 - 87,890,759 (+)NCBI
MGSCv37687,837,934 - 87,863,589 (+)RGD
Celera689,824,999 - 89,850,681 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_001785155
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,864,801 - 87,890,577 (+)NCBI
GRCm38687,887,819 - 87,913,595 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_059505   ⟸   NM_017477
- Peptide Label: isoform 1
- UniProtKB: Q922C6 (UniProtKB/Swiss-Prot),   Q9QZE5 (UniProtKB/Swiss-Prot),   A0A8C6H3H1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_957696   ⟸   NM_201244
- Peptide Label: isoform 2
- UniProtKB: Q7TNQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000109237   ⟸   ENSMUST00000113607
RefSeq Acc Id: ENSMUSP00000050858   ⟸   ENSMUST00000049966
Protein Domains
Clathrin/coatomer adaptor adaptin-like N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QZE5-F1-model_v2 AlphaFold Q9QZE5 1-874 view protein structure

Promoters
RGD ID:6839118
Promoter ID:MM_KWN:46789
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000049966,   OTTMUST00000055237,   OTTMUST00000055238
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,837,681 - 87,838,181 (+)MPROMDB
RGD ID:6839119
Promoter ID:MM_KWN:46790
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000055240,   OTTMUST00000055241,   OTTMUST00000055242
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,844,151 - 87,846,062 (+)MPROMDB
RGD ID:6839122
Promoter ID:MM_KWN:46791
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   MEF_B6
Transcripts:OTTMUST00000055243
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,847,196 - 87,847,912 (+)MPROMDB
RGD ID:6839121
Promoter ID:MM_KWN:46792
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000055244
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,858,261 - 87,858,761 (+)MPROMDB
RGD ID:6890352
Promoter ID:EPDNEW_M8627
Type:initiation region
Name:Copg1_1
Description:Mus musculus coatomer protein complex, subunit gamma 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38687,887,928 - 87,887,988EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858696 AgrOrtholog
Ensembl Genes ENSMUSG00000030058 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000050858 ENTREZGENE
  ENSMUSP00000050858.6 UniProtKB/TrEMBL
  ENSMUSP00000109237 ENTREZGENE
  ENSMUSP00000109237.4 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000049966 ENTREZGENE
  ENSMUST00000049966.6 UniProtKB/TrEMBL
  ENSMUST00000113607 ENTREZGENE
  ENSMUST00000113607.10 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.1480 UniProtKB/Swiss-Prot
  3.30.310.10 UniProtKB/Swiss-Prot
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin/coatomer_adapt-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_app_Ig-like_sf UniProtKB/Swiss-Prot
  Coatomer/calthrin_app_sub_C UniProtKB/Swiss-Prot
  Coatomer_g_Cpla UniProtKB/Swiss-Prot
  Coatomer_gsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_gsu_app_Ig-like_dom UniProtKB/Swiss-Prot
  Coatomer_gsu_app_sf UniProtKB/Swiss-Prot
  TBP_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:54161 UniProtKB/Swiss-Prot
MGD MGI:1858696 ENTREZGENE
NCBI Gene 54161 ENTREZGENE
PANTHER COATOMER SUBUNIT GAMMA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10261 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Adaptin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_g_Cpla UniProtKB/Swiss-Prot
  COP-gamma_platf UniProtKB/Swiss-Prot
PhenoGen Copg1 PhenoGen
PIRSF Coatomer_gamma_subunit UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49348 UniProtKB/Swiss-Prot
  SSF55711 UniProtKB/Swiss-Prot
UniProt A0A8C6H3H1 ENTREZGENE
  COPG1_MOUSE UniProtKB/Swiss-Prot
  Q7TNQ1 ENTREZGENE, UniProtKB/TrEMBL
  Q922C6 ENTREZGENE
  Q9QZE5 ENTREZGENE
UniProt Secondary Q3U9F4 UniProtKB/Swiss-Prot
  Q8BP96 UniProtKB/Swiss-Prot
  Q8R1A7 UniProtKB/Swiss-Prot
  Q922C6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-22 Copg1  coatomer protein complex, subunit gamma 1  Copg  coatomer protein complex, subunit gamma  Symbol and/or name change 5135510 APPROVED