Iqcn (IQ motif containing N) - Rat Genome Database
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Gene: Iqcn (IQ motif containing N) Mus musculus
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Symbol: Iqcn
Name: IQ motif containing N
RGD ID: 1617527
MGI Page MGI
Description: Orthologous to human IQCN (IQ motif containing N); INTERACTS WITH 15-acetyldeoxynivalenol (ortholog); all-trans-retinoic acid (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ENSMUSG00000035586; Gm16486; Gm502; IQ domain-containing protein N; predicted gene 16486; uncharacterized protein KIAA1683 homolog; uncharacterized protein LOC637079
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,154,661 - 71,170,299 (+)NCBIGRCm39mm39
GRCm38870,701,321 - 70,717,650 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,703,457 - 70,717,650 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,232,059 - 73,241,549 (+)NCBIGRCm37mm9NCBIm37
MGSCv36873,637,149 - 73,651,080 (+)NCBImm8
Celera873,264,658 - 73,274,148 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics

Comparative Map Data
Iqcn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,154,661 - 71,170,299 (+)NCBIGRCm39mm39
GRCm38870,701,321 - 70,717,650 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,703,457 - 70,717,650 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,232,059 - 73,241,549 (+)NCBIGRCm37mm9NCBIm37
MGSCv36873,637,149 - 73,651,080 (+)NCBImm8
Celera873,264,658 - 73,274,148 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
IQCN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1918,257,097 - 18,274,509 (-)EnsemblGRCh38hg38GRCh38
GRCh381918,257,098 - 18,274,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371918,367,906 - 18,385,319 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,228,908 - 18,246,235 (-)NCBINCBI36hg18NCBI36
Build 341918,228,907 - 18,246,235NCBI
Celera1918,269,630 - 18,287,045 (-)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1917,931,567 - 17,948,982 (-)NCBIHuRef
CHM1_11918,368,170 - 18,385,585 (-)NCBICHM1_1
Iqcn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,467,425 - 20,483,375 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01620,324,493 - 20,339,412 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,222,176 - 19,223,162 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1618,908,707 - 18,924,642 (-)NCBICelera
Cytogenetic Map16p14NCBI
Iqcn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555243,181,133 - 3,195,111 (+)NCBIChiLan1.0ChiLan1.0
IQCN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11918,708,154 - 18,719,269 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,708,155 - 18,719,021 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01917,732,673 - 17,750,226 (-)NCBIMhudiblu_PPA_v0panPan3
IQCN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2044,745,584 - 44,758,637 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12044,743,889 - 44,758,625 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
IQCN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1259,545,325 - 59,558,077 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
IQCN
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,732,296 - 16,745,050 (-)NCBI
Iqcn
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,558,560 - 1,583,275 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000212436   ⟹   ENSMUSP00000148728
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,703,457 - 70,717,650 (+)Ensembl
RefSeq Acc Id: NM_001370846   ⟹   NP_001357775
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,154,674 - 71,170,299 (+)NCBI
GRCm38870,702,025 - 70,717,650 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001370847   ⟹   NP_001357776
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,154,674 - 71,170,299 (+)NCBI
GRCm38870,702,025 - 70,717,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154224   ⟹   XP_036010117
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,154,661 - 71,170,299 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001357775 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357776 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010117 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001357776   ⟸   NM_001370847
RefSeq Acc Id: NP_001357775   ⟸   NM_001370846
RefSeq Acc Id: ENSMUSP00000148728   ⟸   ENSMUST00000212436
RefSeq Acc Id: XP_036010117   ⟸   XM_036154224
- Peptide Label: isoform X1

Promoters
RGD ID:6843226
Promoter ID:MM_KWN:54731
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:AK010542_2410018E23RIK,   LINCRNA_1012,   UC009MBF.1,   XM_001476374_GM3336
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,241,936 - 73,242,436 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3708784 AgrOrtholog
Ensembl Genes ENSMUSG00000110622 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000148728 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000212436 ENTREZGENE, UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  IQCN/E UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
MGD MGI:3708784 ENTREZGENE
NCBI Gene 637079 ENTREZGENE
PANTHER PTHR22590:SF2 UniProtKB/TrEMBL
Pfam PF00612 UniProtKB/TrEMBL
PhenoGen Iqcn PhenoGen
PROSITE PS50096 UniProtKB/TrEMBL
SMART SM00015 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniGene Mm.462671 ENTREZGENE
UniProt A0A1D5RMD1_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-29 Iqcn  IQ motif containing N  Gm16486  predicted gene 16486  Symbol and/or name change 5135510 APPROVED
2014-09-17 Gm16486  predicted gene 16486  2410018E23Rik  RIKEN cDNA 2410018E23 gene  Symbol and/or name change 5135510 APPROVED