Zfp511 (zinc finger protein 511) - Rat Genome Database

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Gene: Zfp511 (zinc finger protein 511) Mus musculus
Analyze
Symbol: Zfp511
Name: zinc finger protein 511
RGD ID: 1617526
MGI Page MGI
Description: Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZNF511 (zinc finger protein 511).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410004P19Rik; C86579; Znf511
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18246  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397139,616,302 - 139,620,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7139,616,304 - 139,620,515 (+)EnsemblGRCm39 Ensembl
GRCm387140,036,390 - 140,040,606 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,036,391 - 140,040,602 (+)EnsemblGRCm38mm10GRCm38
MGSCv377147,222,290 - 147,226,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367139,885,974 - 139,891,921 (+)NCBIMGSCv36mm8
Celera7139,834,484 - 139,838,698 (+)NCBICelera
Cytogenetic Map7F4NCBI
cM Map785.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Comparative Map Data
Zfp511
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397139,616,302 - 139,620,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7139,616,304 - 139,620,515 (+)EnsemblGRCm39 Ensembl
GRCm387140,036,390 - 140,040,606 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,036,391 - 140,040,602 (+)EnsemblGRCm38mm10GRCm38
MGSCv377147,222,290 - 147,226,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367139,885,974 - 139,891,921 (+)NCBIMGSCv36mm8
Celera7139,834,484 - 139,838,698 (+)NCBICelera
Cytogenetic Map7F4NCBI
cM Map785.03NCBI
ZNF511
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810133,308,914 - 133,313,161 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10133,308,914 - 133,313,162 (+)EnsemblGRCh38hg38GRCh38
GRCh3710135,122,418 - 135,126,665 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610134,972,413 - 134,976,656 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410135,011,303 - 135,015,547NCBI
Celera10128,390,111 - 128,394,334 (-)NCBICelera
Cytogenetic Map10q26.3NCBI
HuRef10128,668,302 - 128,672,525 (+)NCBIHuRef
CHM1_110135,403,152 - 135,407,395 (+)NCBICHM1_1
T2T-CHM13v2.010134,263,351 - 134,267,598 (+)NCBIT2T-CHM13v2.0
Zfp511
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81204,247,349 - 204,251,754 (+)NCBIGRCr8
mRatBN7.21194,817,697 - 194,822,102 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1194,817,697 - 194,822,102 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1203,178,561 - 203,182,968 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,313,703 - 210,318,110 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01202,987,536 - 202,991,943 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,359,293 - 212,363,698 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,359,177 - 212,363,668 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,277,464 - 219,281,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41199,821,893 - 199,826,298 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11199,971,947 - 199,976,260 (+)NCBI
Celera1192,495,206 - 192,499,610 (+)NCBICelera
Cytogenetic Map1q41NCBI
Znf511
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547710,932,851 - 10,936,110 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547710,932,833 - 10,941,562 (+)NCBIChiLan1.0ChiLan1.0
ZNF511
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28145,436,535 - 145,440,777 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110145,441,892 - 145,446,134 (+)NCBINHGRI_mPanPan1
PanPan1.110134,218,665 - 134,225,253 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10134,221,062 - 134,224,957 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl10134,221,062 - 134,224,957 (+)NCBIpanpan1.1panPan2
ZNF511
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,881,819 - 40,885,953 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,881,766 - 40,886,090 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,937,326 - 40,941,780 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02841,518,407 - 41,522,923 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12841,001,142 - 41,005,596 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02840,990,652 - 40,995,075 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02841,393,279 - 41,397,721 (+)NCBIUU_Cfam_GSD_1.0
Znf511
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,134,661 - 6,138,494 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648619,423,879 - 19,426,339 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648619,422,804 - 19,426,637 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF511
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14141,253,368 - 141,261,064 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114141,253,373 - 141,263,226 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214153,216,316 - 153,221,501 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF511
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12653,157,506 - 53,161,756 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2653,157,406 - 53,162,319 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605441,291,183 - 41,295,448 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf511
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473713,432,606 - 13,436,008 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473713,428,543 - 13,436,072 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp511
144 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:101
Interacting mature miRNAs:101
Transcripts:ENSMUST00000168194
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127398151144995196Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
14746988Manh63_mmandible shape 63 (mouse)7127735437144995196Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127311241144995196Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse

Markers in Region
C86579  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387140,040,337 - 140,040,582UniSTSGRCm38
MGSCv377147,226,236 - 147,226,481UniSTSGRCm37
Celera7139,838,430 - 139,838,675UniSTS
Cytogenetic Map7F4UniSTS
Whitehead/MRC_RH71426.04UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000168194   ⟹   ENSMUSP00000129154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7139,616,325 - 139,620,515 (+)Ensembl
GRCm38.p6 Ensembl7140,036,412 - 140,040,602 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210089
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7139,616,702 - 139,620,515 (+)Ensembl
GRCm38.p6 Ensembl7140,036,789 - 140,040,602 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7139,616,304 - 139,616,855 (+)Ensembl
GRCm38.p6 Ensembl7140,036,391 - 140,036,942 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210882   ⟹   ENSMUSP00000147401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7139,616,441 - 139,620,515 (+)Ensembl
GRCm38.p6 Ensembl7140,036,528 - 140,040,602 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7139,616,783 - 139,617,539 (+)Ensembl
GRCm38.p6 Ensembl7140,036,870 - 140,037,626 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211789   ⟹   ENSMUSP00000147966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7139,616,318 - 139,620,512 (+)Ensembl
GRCm38.p6 Ensembl7140,036,405 - 140,040,599 (+)Ensembl
RefSeq Acc Id: NM_027201   ⟹   NP_081477
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397139,616,315 - 139,620,514 (+)NCBI
GRCm387140,036,391 - 140,040,605 (+)NCBI
MGSCv377147,222,290 - 147,226,504 (+)RGD
Celera7139,834,484 - 139,838,698 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_176427
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397139,616,315 - 139,620,514 (+)NCBI
RefSeq Acc Id: NR_176428
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397139,616,315 - 139,620,514 (+)NCBI
RefSeq Acc Id: NR_176429
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397139,616,315 - 139,620,514 (+)NCBI
RefSeq Acc Id: XM_030242975   ⟹   XP_030098835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397139,616,302 - 139,620,519 (+)NCBI
GRCm387140,036,390 - 140,040,606 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081477   ⟸   NM_027201
- Peptide Label: isoform 1
- UniProtKB: Q6P0X2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030098835   ⟸   XM_030242975
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000147966   ⟸   ENSMUST00000211789
RefSeq Acc Id: ENSMUSP00000147401   ⟸   ENSMUST00000210882
RefSeq Acc Id: ENSMUSP00000129154   ⟸   ENSMUST00000168194
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P0X2-F1-model_v2 AlphaFold Q6P0X2 1-227 view protein structure

Promoters
RGD ID:8665987
Promoter ID:EPDNEW_M11025
Type:multiple initiation site
Name:Zfp511_1
Description:Mus musculus zinc finger protein 511 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387140,036,413 - 140,036,473EPDNEW
RGD ID:6842391
Promoter ID:MM_KWN:53140
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000026543,   NM_027201,   NM_133755,   UC009KGM.1,   UC009KGN.1,   UC009KGO.1,   UC009KGP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367147,222,146 - 147,222,646 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917002 AgrOrtholog
Ensembl Genes ENSMUSG00000025470 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000168194 ENTREZGENE
  ENSMUST00000168194.3 UniProtKB/Swiss-Prot
  ENSMUST00000210882.2 UniProtKB/TrEMBL
  ENSMUST00000211789 ENTREZGENE
  ENSMUST00000211789.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ZNF511 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69752 UniProtKB/Swiss-Prot
MGD MGI:1917002 ENTREZGENE
NCBI Gene 69752 ENTREZGENE
PANTHER PTHR21354 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 511 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfp511 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GR70_MOUSE UniProtKB/TrEMBL
  A0A1B0GSJ9_MOUSE UniProtKB/TrEMBL
  Q6P0X2 ENTREZGENE
  Q9CRI6_MOUSE UniProtKB/TrEMBL
  ZN511_MOUSE UniProtKB/Swiss-Prot