Borcs8 (BLOC-1 related complex subunit 8) - Rat Genome Database
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Gene: Borcs8 (BLOC-1 related complex subunit 8) Mus musculus
Analyze
Symbol: Borcs8
Name: BLOC-1 related complex subunit 8
RGD ID: 1617497
MGI Page MGI
Description: Predicted to localize to BORC complex. Orthologous to human BORCS8 (BLOC-1 related complex subunit 8); INTERACTS WITH crocidolite asbestos; tetrachloroethene; tremolite asbestos.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2310045N01Rik; BLOC-1-related complex subunit 8; hypothetical protein LOC72368; MEF2B neighbor gene protein homolog; Mef2bnb
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,592,149 - 70,601,285 (+)NCBIGRCm39mm39
GRCm38870,139,499 - 70,148,635 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,139,499 - 70,147,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,663,612 - 72,671,160 (+)NCBIGRCm37mm9NCBIm37
MGSCv36873,069,266 - 73,076,308 (+)NCBImm8
Celera872,695,151 - 72,702,730 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
BORC complex  (ISO)
lysosome  (IEA)
membrane  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7646512   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466305   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:21267068   PMID:21677750   PMID:29997285  


Genomics

Comparative Map Data
Borcs8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,592,149 - 70,601,285 (+)NCBIGRCm39mm39
GRCm38870,139,499 - 70,148,635 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,139,499 - 70,147,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,663,612 - 72,671,160 (+)NCBIGRCm37mm9NCBIm37
MGSCv36873,069,266 - 73,076,308 (+)NCBImm8
Celera872,695,151 - 72,702,730 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
BORCS8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1919,176,903 - 19,192,591 (-)EnsemblGRCh38hg38GRCh38
GRCh381919,176,906 - 19,192,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371919,287,713 - 19,303,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361919,153,685 - 19,164,425 (-)NCBINCBI36hg18NCBI36
Celera1919,192,547 - 19,208,203 (-)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1918,851,509 - 18,867,171 (-)NCBIHuRef
CHM1_11919,288,223 - 19,303,916 (-)NCBICHM1_1
Borcs8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01621,022,500 - 21,029,163 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,023,996 - 21,029,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,872,444 - 20,879,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,757,638 - 19,764,480 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1619,462,947 - 19,469,545 (-)NCBICelera
Cytogenetic Map16p14NCBI
Borcs8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,641,907 - 2,646,275 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,641,907 - 2,646,275 (+)NCBIChiLan1.0ChiLan1.0
BORCS8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11919,590,791 - 19,632,239 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,617,791 - 19,632,239 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01918,615,221 - 18,630,230 (-)NCBIMhudiblu_PPA_v0panPan3
BORCS8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2043,984,075 - 43,992,955 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12043,983,476 - 43,994,575 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Borcs8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365962,232,183 - 2,242,267 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BORCS8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,684,542 - 58,698,205 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,684,508 - 58,696,586 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103234208
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl617,648,758 - 17,660,877 (-)Ensembl
ChlSab1.1617,648,714 - 17,660,931 (-)NCBI
Borcs8
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249082,082,745 - 2,089,666 (-)NCBI

Position Markers
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1578
Count of miRNA genes:498
Interacting mature miRNAs:605
Transcripts:ENSMUST00000002418, ENSMUST00000072500, ENSMUST00000110139, ENSMUST00000123760, ENSMUST00000123976, ENSMUST00000129668, ENSMUST00000163756, ENSMUST00000164040
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001145552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001309645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001309841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_132131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_132132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_132133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA270613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC167132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI153493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI480554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI627072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB748920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE623475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE626539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE984996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ556387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX218046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX564799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  W13022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000002418   ⟹   ENSMUSP00000002418
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,139,499 - 70,147,256 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110139   ⟹   ENSMUSP00000105766
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,140,277 - 70,147,319 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123760   ⟹   ENSMUSP00000118102
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,139,713 - 70,145,549 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123976
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,139,707 - 70,145,535 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129668   ⟹   ENSMUSP00000137694
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,139,723 - 70,147,261 (+)Ensembl
RefSeq Acc Id: NM_001145552   ⟹   NP_001139024
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,592,149 - 70,601,285 (+)NCBI
GRCm38870,139,499 - 70,148,635 (+)NCBI
MGSCv37872,663,612 - 72,671,160 (+)RGD
Celera872,695,151 - 72,702,730 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001309645   ⟹   NP_001296574
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,592,149 - 70,598,199 (+)NCBI
GRCm38870,139,499 - 70,145,549 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001309841   ⟹   NP_001296770
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,592,927 - 70,601,285 (+)NCBI
GRCm38870,140,277 - 70,148,635 (+)NCBI
Sequence:
RefSeq Acc Id: NR_132131
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,592,149 - 70,598,199 (+)NCBI
GRCm38870,139,499 - 70,145,549 (+)NCBI
Sequence:
RefSeq Acc Id: NR_132132
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,592,149 - 70,601,285 (+)NCBI
GRCm38870,139,499 - 70,148,635 (+)NCBI
Sequence:
RefSeq Acc Id: NR_132133
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,592,149 - 70,601,285 (+)NCBI
GRCm38870,139,499 - 70,148,635 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001139024 (Get FASTA)   NCBI Sequence Viewer  
  NP_001296574 (Get FASTA)   NCBI Sequence Viewer  
  NP_001296770 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB26528 (Get FASTA)   NCBI Sequence Viewer  
  Q9D6Y4 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001139024   ⟸   NM_001145552
- Peptide Label: isoform 1
- UniProtKB: Q9D6Y4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001296574   ⟸   NM_001309645
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001296770   ⟸   NM_001309841
- Peptide Label: isoform 3
- UniProtKB: Q9D6Y4 (UniProtKB/Swiss-Prot),   D3Z373 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000105766   ⟸   ENSMUST00000110139
RefSeq Acc Id: ENSMUSP00000137694   ⟸   ENSMUST00000129668
RefSeq Acc Id: ENSMUSP00000002418   ⟸   ENSMUST00000002418
RefSeq Acc Id: ENSMUSP00000118102   ⟸   ENSMUST00000123760

Promoters
RGD ID:8667279
Promoter ID:EPDNEW_M11671
Type:multiple initiation site
Name:Borcs8_1
Description:Mus musculus BLOC-1 related complex subunit 8 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38870,139,465 - 70,139,525EPDNEW
RGD ID:6843466
Promoter ID:MM_KWN:54664
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Spleen
Transcripts:ENSMUST00000072500,   OTTMUST00000052771,   OTTMUST00000071536,   UC009LYX.1,   UC009LYY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,662,781 - 72,663,662 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919618 AgrOrtholog
Ensembl Genes ENSMUSG00000002345 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000002418 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000105766 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000118102 UniProtKB/TrEMBL
  ENSMUSP00000137694 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000002418 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000110139 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000123760 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000129668 UniProtKB/TrEMBL
InterPro BORCS8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72368 UniProtKB/Swiss-Prot
MGD MGI:1919618 ENTREZGENE
NCBI Gene 72368 ENTREZGENE
PANTHER PTHR21146 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BORCS8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Borcs8 PhenoGen
UniGene Mm.482108 ENTREZGENE
  Mm.644 ENTREZGENE
UniProt BORC8_MOUSE UniProtKB/Swiss-Prot
  D3Z373 ENTREZGENE, UniProtKB/TrEMBL
  D6RJ21_MOUSE UniProtKB/TrEMBL
  Q9D6Y4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-09-15 Borcs8  BLOC-1 related complex subunit 8  2310045N01Rik  RIKEN cDNA 2310045N01 gene  Symbol and/or name change 5135510 APPROVED