2210408I21Rik (RIKEN cDNA 2210408I21 gene) - Rat Genome Database

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Gene: 2210408I21Rik (RIKEN cDNA 2210408I21 gene) Mus musculus
Analyze
Symbol: 2210408I21Rik
Name: RIKEN cDNA 2210408I21 gene
RGD ID: 1617496
MGI Page MGI
Description: Is expressed in several structures, including adipose tissue; adrenal gland; genitourinary system; gut; and nervous system. Orthologous to human KIAA0825 (KIAA0825); INTERACTS WITH (+)-schisandrin B (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog); aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC72371; MGC107105; uncharacterized protein KIAA0825 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391377,283,636 - 77,761,798 (+)NCBIGRCm39mm39
GRCm39 Ensembl1377,283,659 - 77,761,903 (+)Ensembl
GRCm381377,135,531 - 77,613,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1377,135,540 - 77,613,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv371377,274,797 - 77,752,940 (+)NCBIGRCm37mm9NCBIm37
MGSCv361377,599,083 - 78,076,838 (+)NCBImm8
Celera1379,463,325 - 79,920,002 (+)NCBICelera
Cytogenetic Map13C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:24194600  


Genomics

Comparative Map Data
2210408I21Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391377,283,636 - 77,761,798 (+)NCBIGRCm39mm39
GRCm39 Ensembl1377,283,659 - 77,761,903 (+)Ensembl
GRCm381377,135,531 - 77,613,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1377,135,540 - 77,613,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv371377,274,797 - 77,752,940 (+)NCBIGRCm37mm9NCBIm37
MGSCv361377,599,083 - 78,076,838 (+)NCBImm8
Celera1379,463,325 - 79,920,002 (+)NCBICelera
Cytogenetic Map13C1NCBI
KIAA0825
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl594,150,851 - 94,618,604 (-)EnsemblGRCh38hg38GRCh38
GRCh38594,150,851 - 94,618,604 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37593,486,556 - 93,954,309 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36593,880,919 - 93,980,040 (-)NCBINCBI36hg18NCBI36
Celera589,346,774 - 89,816,202 (-)NCBI
Cytogenetic Map5q15NCBI
HuRef588,659,548 - 89,127,582 (-)NCBIHuRef
CHM1_1592,919,534 - 93,386,938 (-)NCBICHM1_1
RGD1560883
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.226,874,474 - 7,437,032 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl24,195,917 - 4,754,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.024,195,871 - 4,755,065 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.024,193,792 - 4,735,075 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.424,529,886 - 4,659,597 (+)NCBIRGSC3.4rn4RGSC3.4
Celera23,326,273 - 3,884,737 (+)NCBICelera
Cytogenetic Map2q11NCBI
Kiaa0825
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541817,851,078 - 17,995,990 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541817,818,641 - 18,203,402 (+)NCBIChiLan1.0ChiLan1.0
KIAA0825
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1520,894,477 - 21,353,552 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl520,930,543 - 21,352,509 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0520,755,995 - 21,216,208 (+)NCBIMhudiblu_PPA_v0panPan3
KIAA0825
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1314,868,609 - 15,251,247 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl314,893,203 - 15,249,730 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha316,207,450 - 16,588,002 (+)NCBI
ROS_Cfam_1.0314,796,918 - 15,135,637 (+)NCBI
UMICH_Zoey_3.1314,711,657 - 15,011,407 (+)NCBI
UNSW_CanFamBas_1.0314,710,159 - 15,090,916 (+)NCBI
UU_Cfam_GSD_1.0314,913,859 - 15,296,241 (+)NCBI
Kiaa0825
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213170,449,148 - 170,830,022 (+)NCBI
SpeTri2.0NW_0049365238,634,617 - 9,015,742 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA0825
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2100,934,424 - 101,291,935 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12100,935,165 - 101,291,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22104,714,898 - 104,739,896 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIAA0825
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1488,018,026 - 88,499,287 (-)NCBI
ChlSab1.1 Ensembl488,238,022 - 88,422,215 (-)Ensembl
Vero_WHO_p1.0NW_02366624023,272 - 104,913 (+)NCBI
Kiaa0825
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474312,945,095 - 13,327,509 (-)NCBI

Position Markers
MHAa34g12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381377,175,636 - 77,175,799UniSTSGRCm38
MGSCv371377,314,897 - 77,315,060UniSTSGRCm37
Celera1379,501,441 - 79,501,604UniSTS
Cytogenetic Map13C1UniSTS
Whitehead_YAC13 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20293442112761890Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133587692596102654Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4505696683596627Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134505696683596627Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5017034784170495Mouse
1300916Mobe2_mmodifier of obesity 2 (mouse)Not determined135017034784170495Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135017034784170495Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135046870984468908Mouse
14746975Manh74_mmandible shape 74 (mouse)135232915086329150Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135367266487672778Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135523686189237021Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55572541112294569Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55572541112294569Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55572541112294569Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55572541112294569Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356322643105285678Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135648143696102654Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135898448192984619Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136410270298102826Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136410270298102826Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366596482100596627Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1367905880101906000Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368068947102068947Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1369963165103963165Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined75984481112294569Mouse
1301610Dps1_mdelta power in slow-wave sleep 1 (mouse)Not determined137704774395594386Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:130
Interacting mature miRNAs:139
Transcripts:ENSMUST00000168779
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001145676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC141892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB649442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC157949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF470857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000168779   ⟹   ENSMUSP00000127449
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1377,135,540 - 77,613,784 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225605   ⟹   ENSMUSP00000153096
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1377,135,554 - 77,193,714 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225760   ⟹   ENSMUSP00000153269
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1377,193,034 - 77,261,969 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225960   ⟹   ENSMUSP00000153525
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1377,135,551 - 77,183,739 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225992
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1377,135,551 - 77,184,004 (+)Ensembl
RefSeq Acc Id: NM_001081353   ⟹   NP_001074822
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391377,283,655 - 77,342,025 (+)NCBI
GRCm381377,135,536 - 77,193,906 (+)NCBI
MGSCv371377,274,797 - 77,752,940 (+)RGD
Celera1379,463,325 - 79,920,002 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001145676   ⟹   NP_001139148
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391377,283,655 - 77,761,798 (+)NCBI
GRCm381377,135,536 - 77,613,679 (+)NCBI
MGSCv371377,274,797 - 77,752,940 (+)RGD
Celera1379,463,325 - 79,920,002 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517397   ⟹   XP_006517460
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391377,283,636 - 77,563,517 (+)NCBI
GRCm381377,135,531 - 77,420,755 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158179   ⟹   XP_036014072
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391377,283,636 - 77,498,857 (+)NCBI
RefSeq Acc Id: XM_036158180   ⟹   XP_036014073
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391377,283,636 - 77,486,473 (+)NCBI
RefSeq Acc Id: XM_036158181   ⟹   XP_036014074
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391377,283,650 - 77,498,857 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001074822   ⟸   NM_001081353
- Peptide Label: isoform 2
- UniProtKB: Q3UPC7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001139148   ⟸   NM_001145676
- Peptide Label: isoform 1
- UniProtKB: Q3UPC7 (UniProtKB/Swiss-Prot),   B9EKQ6 (UniProtKB/TrEMBL),   Q3TNF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517460   ⟸   XM_006517397
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSMUSP00000153525   ⟸   ENSMUST00000225960
RefSeq Acc Id: ENSMUSP00000153269   ⟸   ENSMUST00000225760
RefSeq Acc Id: ENSMUSP00000153096   ⟸   ENSMUST00000225605
RefSeq Acc Id: ENSMUSP00000127449   ⟸   ENSMUST00000168779
RefSeq Acc Id: XP_036014072   ⟸   XM_036158179
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036014073   ⟸   XM_036158180
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036014074   ⟸   XM_036158181
- Peptide Label: isoform X3

Promoters
RGD ID:8680878
Promoter ID:EPDNEW_M18470
Type:initiation region
Name:2210408I21Rik_1
Description:Mus musculus RIKEN cDNA 2210408I21 gene , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381377,135,551 - 77,135,611EPDNEW
RGD ID:6823560
Promoter ID:MM_KWN:14750
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   MEF_B4
Transcripts:AK089501_BRCTD1,   ENSMUST00000063291,   ENSMUST00000095588,   NM_001081353,   NM_001145676,   NM_134071,   UC007RGT.1,   UC007RGV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361377,274,474 - 77,274,974 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919621 AgrOrtholog
Ensembl Genes ENSMUSG00000071252 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000127449 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000153096 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000153269 UniProtKB/TrEMBL
  ENSMUSP00000153525 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000168779 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000225605 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000225760 UniProtKB/TrEMBL
  ENSMUST00000225960 UniProtKB/TrEMBL
InterPro DUF4495 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1919621 ENTREZGENE
NCBI Gene 72371 ENTREZGENE
PANTHER PTHR33960 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4495 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 2210408I21Rik PhenoGen
UniProt A0A286YD44_MOUSE UniProtKB/TrEMBL
  A0A286YDQ9_MOUSE UniProtKB/TrEMBL
  B2RXR4_MOUSE UniProtKB/TrEMBL
  B9EKQ6 ENTREZGENE, UniProtKB/TrEMBL
  K0825_MOUSE UniProtKB/Swiss-Prot
  Q3TNF8 ENTREZGENE, UniProtKB/TrEMBL
  Q3UPC7 ENTREZGENE
UniProt Secondary E9Q2V0 UniProtKB/Swiss-Prot
  Q3TPR6 UniProtKB/Swiss-Prot
  Q5FWD2 UniProtKB/Swiss-Prot
  Q8BQF4 UniProtKB/Swiss-Prot
  Q9D7T8 UniProtKB/Swiss-Prot