Slc35f6 (solute carrier family 35, member F6) - Rat Genome Database

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Gene: Slc35f6 (solute carrier family 35, member F6) Mus musculus
Analyze
Symbol: Slc35f6
Name: solute carrier family 35, member F6
RGD ID: 1617478
MGI Page MGI
Description: Predicted to enable transmembrane transporter activity. Predicted to be involved in negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway and positive regulation of cell population proliferation. Located in lysosome. Orthologous to human SLC35F6 (solute carrier family 35 member F6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930471M23Rik; 5730478O19Rik; ANT2-binding protein; ANT2BP; p4; P40; solute carrier family 35 member F6; Tan; Tango9; transmembrane protein C2orf18 homolog; transport and Golgi organization 9 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,805,272 - 30,817,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,805,277 - 30,817,073 (+)EnsemblGRCm39 Ensembl
GRCm38530,647,939 - 30,659,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,647,933 - 30,659,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,950,312 - 30,962,102 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,924,544 - 30,936,310 (+)NCBIMGSCv36mm8
Celera528,126,432 - 28,138,222 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16367739   PMID:21677750   PMID:21873635   PMID:30973865   PMID:38355793  


Genomics

Comparative Map Data
Slc35f6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,805,272 - 30,817,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,805,277 - 30,817,073 (+)EnsemblGRCm39 Ensembl
GRCm38530,647,939 - 30,659,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,647,933 - 30,659,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,950,312 - 30,962,102 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,924,544 - 30,936,310 (+)NCBIMGSCv36mm8
Celera528,126,432 - 28,138,222 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.74NCBI
SLC35F6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,764,284 - 26,781,231 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,764,284 - 26,781,231 (+)EnsemblGRCh38hg38GRCh38
GRCh37226,987,152 - 27,004,099 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,840,646 - 26,857,603 (+)NCBINCBI36Build 36hg18NCBI36
Build 34226,898,798 - 26,914,715NCBI
Celera226,833,199 - 26,850,160 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,728,866 - 26,745,828 (+)NCBIHuRef
CHM1_1226,916,870 - 26,933,831 (+)NCBICHM1_1
T2T-CHM13v2.0226,805,872 - 26,822,820 (+)NCBIT2T-CHM13v2.0
Slc35f6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,445,738 - 31,457,580 (-)NCBIGRCr8
mRatBN7.2625,725,822 - 25,737,720 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,725,819 - 25,737,730 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,018,501 - 26,030,325 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,334,378 - 26,346,202 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,814,017 - 25,825,856 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,095,144 - 27,106,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,095,141 - 27,107,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,910,710 - 36,922,612 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,708,502 - 25,720,340 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,711,455 - 25,723,293 (-)NCBI
Celera625,209,088 - 25,220,923 (-)NCBICelera
Cytogenetic Map6q14NCBI
Slc35f6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,773,989 - 8,787,549 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,774,225 - 8,787,549 (+)NCBIChiLan1.0ChiLan1.0
SLC35F6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,733,643 - 99,751,576 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,737,570 - 99,755,558 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,762,690 - 26,780,492 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,854,078 - 26,871,820 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A26,854,078 - 26,871,820 (+)Ensemblpanpan1.1panPan2
SLC35F6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,793,821 - 20,807,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,793,964 - 20,806,775 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,687,739 - 20,714,321 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,115,081 - 21,141,661 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,115,127 - 21,131,879 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,801,940 - 20,828,509 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,813,289 - 20,839,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,859,303 - 20,885,884 (+)NCBIUU_Cfam_GSD_1.0
Slc35f6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,092,294 - 65,108,035 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,731,058 - 5,760,987 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,731,106 - 5,747,270 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35F6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,280,661 - 112,296,865 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,280,654 - 112,296,874 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,279,988 - 119,296,212 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35F6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,853,736 - 80,869,946 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,850,555 - 80,869,894 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,275,651 - 31,291,136 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35f6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,875,438 - 8,888,571 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,875,717 - 8,890,439 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc35f6
548 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1870
Count of miRNA genes:620
Interacting mature miRNAs:782
Transcripts:ENSMUST00000062962, ENSMUST00000124474, ENSMUST00000131978, ENSMUST00000143867
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse

Markers in Region
D5Mit389  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38530,647,188 - 30,647,294UniSTSGRCm38
MGSCv37530,949,561 - 30,949,667UniSTSGRCm37
Celera528,125,681 - 28,125,787UniSTS
Cytogenetic Map5B1UniSTS
cM Map518.0UniSTS
Whitehead Genetic514.2UniSTS
Whitehead/MRC_RH5386.1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_175675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY166812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000062962   ⟹   ENSMUSP00000058680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,805,277 - 30,817,073 (+)Ensembl
GRCm38.p6 Ensembl530,647,933 - 30,659,729 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124474   ⟹   ENSMUSP00000120986
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,805,356 - 30,815,535 (+)Ensembl
GRCm38.p6 Ensembl530,648,012 - 30,658,191 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,805,320 - 30,813,444 (+)Ensembl
GRCm38.p6 Ensembl530,647,976 - 30,656,100 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143867   ⟹   ENSMUSP00000122703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,805,311 - 30,815,535 (+)Ensembl
GRCm38.p6 Ensembl530,647,967 - 30,658,191 (+)Ensembl
Ensembl Acc Id: ENSMUST00000196740   ⟹   ENSMUSP00000142761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,805,285 - 30,815,588 (+)Ensembl
GRCm38.p6 Ensembl530,647,941 - 30,658,244 (+)Ensembl
Ensembl Acc Id: ENSMUST00000198025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,805,297 - 30,810,628 (+)Ensembl
GRCm38.p6 Ensembl530,647,953 - 30,653,284 (+)Ensembl
Ensembl Acc Id: ENSMUST00000199052   ⟹   ENSMUSP00000142850
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,813,440 - 30,815,146 (+)Ensembl
GRCm38.p6 Ensembl530,656,096 - 30,657,802 (+)Ensembl
RefSeq Acc Id: NM_175675   ⟹   NP_783606
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,805,283 - 30,817,073 (+)NCBI
GRCm38530,647,939 - 30,659,729 (+)ENTREZGENE
MGSCv37530,950,312 - 30,962,102 (+)RGD
Celera528,126,432 - 28,138,222 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036165569   ⟹   XP_036021462
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,805,272 - 30,817,025 (+)NCBI
Sequence:
RefSeq Acc Id: NP_783606   ⟸   NM_175675
- Peptide Label: precursor
- UniProtKB: Q8VE96 (UniProtKB/Swiss-Prot),   Q8BKN1 (UniProtKB/Swiss-Prot),   Q3UB33 (UniProtKB/Swiss-Prot),   Q9D5B2 (UniProtKB/Swiss-Prot),   Q8BK02 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000120986   ⟸   ENSMUST00000124474
Ensembl Acc Id: ENSMUSP00000122703   ⟸   ENSMUST00000143867
Ensembl Acc Id: ENSMUSP00000142850   ⟸   ENSMUST00000199052
Ensembl Acc Id: ENSMUSP00000142761   ⟸   ENSMUST00000196740
Ensembl Acc Id: ENSMUSP00000058680   ⟸   ENSMUST00000062962
RefSeq Acc Id: XP_036021462   ⟸   XM_036165569
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JEG3 (UniProtKB/TrEMBL)
Protein Domains
EamA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VE96-F1-model_v2 AlphaFold Q8VE96 1-372 view protein structure

Promoters
RGD ID:6886292
Promoter ID:EPDNEW_M6597
Type:initiation region
Name:Slc35f6_1
Description:Mus musculus solute carrier family 35, member F6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38530,647,963 - 30,648,023EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922169 AgrOrtholog
Ensembl Genes ENSMUSG00000029175 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000062962 ENTREZGENE
  ENSMUST00000062962.12 UniProtKB/Swiss-Prot
  ENSMUST00000124474.2 UniProtKB/TrEMBL
  ENSMUST00000143867.8 UniProtKB/TrEMBL
  ENSMUST00000196740 ENTREZGENE
  ENSMUST00000196740.5 UniProtKB/TrEMBL
  ENSMUST00000199052.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3730.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SLC35_F1/F2/F6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UCP036436 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74919 UniProtKB/Swiss-Prot
MGD MGI:1922169 ENTREZGENE
NCBI Gene 74919 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 MEMBER F6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SLC35F UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc35f6 PhenoGen
PIRSF UCP036436 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JEG3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JEP3_MOUSE UniProtKB/TrEMBL
  D6RFU7_MOUSE UniProtKB/TrEMBL
  D6RHL1_MOUSE UniProtKB/TrEMBL
  Q3UB33 ENTREZGENE
  Q8BK02 ENTREZGENE, UniProtKB/TrEMBL
  Q8BKN1 ENTREZGENE
  Q8VE96 ENTREZGENE
  Q9D5B2 ENTREZGENE
  S35F6_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UB33 UniProtKB/Swiss-Prot
  Q8BKN1 UniProtKB/Swiss-Prot
  Q9D5B2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-08 Slc35f6  solute carrier family 35, member F6  4930471M23Rik  RIKEN cDNA 4930471M23 gene  Symbol and/or name change 5135510 APPROVED