Rab11fip2 (RAB11 family interacting protein 2 (class I)) - Rat Genome Database

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Gene: Rab11fip2 (RAB11 family interacting protein 2 (class I)) Mus musculus
Analyze
Symbol: Rab11fip2
Name: RAB11 family interacting protein 2 (class I)
RGD ID: 1617469
MGI Page MGI
Description: Predicted to enable protein homodimerization activity and protein kinase binding activity. Involved in insulin secretion involved in cellular response to glucose stimulus and regulated exocytosis. Predicted to be located in nucleoplasm. Predicted to be active in endosome and phagocytic cup. Is expressed in nephric duct of male and telencephalon ventricular layer. Orthologous to human RAB11FIP2 (RAB11 family interacting protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930470G04Rik; A830046J09Rik; AW558126; expressed sequence AW558126; nR; Nrip11; rab11 family-interacting protein 2; Rab11-; Rab11-family interacting protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391959,881,934 - 59,933,086 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1959,891,316 - 59,932,086 (-)EnsemblGRCm39 Ensembl
GRCm381959,893,502 - 59,943,656 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1959,902,884 - 59,943,654 (-)EnsemblGRCm38mm10GRCm38
MGSCv371959,978,787 - 60,019,557 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361959,958,359 - 59,998,027 (-)NCBIMGSCv36mm8
Celera1962,094,408 - 62,135,218 (-)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1956.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Physiology and pathophysiology of the vasopressin-regulated renal water reabsorption. Boone M and Deen PM, Pflugers Arch. 2008 Sep;456(6):1005-24. Epub 2008 Apr 23.
2. A Role of myosin Vb and Rab11-FIP2 in the aquaporin-2 shuttle. Nedvetsky PI, etal., Traffic. 2007 Feb;8(2):110-23. Epub 2006 Dec 6.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12364336   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16944949  
PMID:18984164   PMID:19335615   PMID:20534835   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24200680   PMID:27899360   PMID:29518331   PMID:32325033   PMID:32581705   PMID:35819177  
PMID:36417873  


Genomics

Comparative Map Data
Rab11fip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391959,881,934 - 59,933,086 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1959,891,316 - 59,932,086 (-)EnsemblGRCm39 Ensembl
GRCm381959,893,502 - 59,943,656 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1959,902,884 - 59,943,654 (-)EnsemblGRCm38mm10GRCm38
MGSCv371959,978,787 - 60,019,557 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361959,958,359 - 59,998,027 (-)NCBIMGSCv36mm8
Celera1962,094,408 - 62,135,218 (-)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1956.28NCBI
RAB11FIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810118,004,916 - 118,046,941 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10118,004,916 - 118,046,941 (-)EnsemblGRCh38hg38GRCh38
GRCh3710119,764,427 - 119,806,452 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610119,754,419 - 119,796,104 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410119,754,418 - 119,796,104NCBI
Celera10113,494,224 - 113,535,915 (-)NCBICelera
Cytogenetic Map10q26.11NCBI
HuRef10113,392,863 - 113,434,552 (-)NCBIHuRef
CHM1_110120,048,435 - 120,090,122 (-)NCBICHM1_1
T2T-CHM13v2.010118,898,958 - 118,940,990 (-)NCBIT2T-CHM13v2.0
Rab11fip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81268,908,825 - 269,080,691 (-)NCBIGRCr8
mRatBN7.21258,950,535 - 259,094,555 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1258,923,873 - 259,093,752 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1267,264,170 - 267,299,888 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01273,970,206 - 274,005,924 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01266,616,423 - 266,652,133 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01281,065,346 - 281,101,163 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1281,065,168 - 281,101,438 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01288,422,015 - 288,457,832 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41266,461,752 - 266,497,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11266,672,789 - 266,713,588 (-)NCBI
Celera1254,705,763 - 254,741,674 (-)NCBICelera
Cytogenetic Map1q55NCBI
Rab11fip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543122,634,103 - 22,674,107 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543122,637,605 - 22,674,107 (-)NCBIChiLan1.0ChiLan1.0
RAB11FIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28129,865,455 - 129,907,443 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110129,870,793 - 129,912,003 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010114,577,851 - 114,619,808 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110118,003,025 - 118,044,607 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10117,970,693 - 118,044,607 (-)Ensemblpanpan1.1panPan2
RAB11FIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12828,415,139 - 28,457,215 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2828,415,639 - 28,457,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2828,531,739 - 28,600,617 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02828,917,842 - 28,986,521 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2828,944,943 - 28,986,369 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12828,478,894 - 28,547,486 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02828,493,741 - 28,562,416 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02828,688,873 - 28,757,762 (-)NCBIUU_Cfam_GSD_1.0
Rab11fip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721317,831,562 - 17,868,725 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364867,691,752 - 7,729,742 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364867,692,577 - 7,729,736 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14128,068,959 - 128,110,512 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114128,068,085 - 128,110,949 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214139,582,795 - 139,625,498 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11FIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19110,805,236 - 110,846,691 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9110,805,022 - 110,846,830 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604872,061,961 - 72,103,670 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11fip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473728,634,079 - 28,686,886 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473728,633,815 - 28,675,773 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab11fip2
1243 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2643
Count of miRNA genes:679
Interacting mature miRNAs:901
Transcripts:ENSMUST00000051996, ENSMUST00000170819, ENSMUST00000171986
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193788298261420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193959606661420004Mouse
1300585Pgia12_mproteoglycan induced arthritis 12 (mouse)Not determined194258685961420004Mouse

Markers in Region
AW558126  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381959,903,381 - 59,903,464UniSTSGRCm38
MGSCv371959,979,284 - 59,979,367UniSTSGRCm37
Celera1962,094,907 - 62,094,990UniSTS
Cytogenetic Map19D3UniSTS
Whitehead/MRC_RH19661.29UniSTS
D19Mgc5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381959,903,437 - 59,903,901UniSTSGRCm38
MGSCv371959,979,340 - 59,979,804UniSTSGRCm37
Celera1962,094,963 - 62,095,425UniSTS
Cytogenetic Map19D3UniSTS
D19Dcr70  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381959,926,229 - 59,926,325UniSTSGRCm38
Celera1962,117,555 - 62,117,641UniSTS
Cytogenetic Map19D3UniSTS
cM Map19 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000051996   ⟹   ENSMUSP00000059978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1959,892,128 - 59,931,796 (-)Ensembl
GRCm38.p6 Ensembl1959,903,696 - 59,943,364 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170819   ⟹   ENSMUSP00000133151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1959,895,348 - 59,931,432 (-)Ensembl
GRCm38.p6 Ensembl1959,906,916 - 59,943,000 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171986   ⟹   ENSMUSP00000128813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1959,891,316 - 59,932,086 (-)Ensembl
GRCm38.p6 Ensembl1959,902,884 - 59,943,654 (-)Ensembl
RefSeq Acc Id: NM_001033172   ⟹   NP_001028344
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391959,891,316 - 59,931,796 (-)NCBI
GRCm381959,902,884 - 59,943,364 (-)NCBI
MGSCv371959,978,787 - 60,019,557 (-)RGD
Celera1962,094,408 - 62,135,218 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164367   ⟹   NP_001157839
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391959,891,316 - 59,932,086 (-)NCBI
GRCm381959,902,884 - 59,943,654 (-)NCBI
MGSCv371959,978,787 - 60,019,557 (-)RGD
Celera1962,094,408 - 62,135,218 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011247386   ⟹   XP_011245688
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391959,881,934 - 59,933,086 (-)NCBI
GRCm381959,893,502 - 59,943,656 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161718   ⟹   XP_036017611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391959,891,316 - 59,931,048 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001028344   ⟸   NM_001033172
- Peptide Label: isoform 1
- UniProtKB: Q3U366 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157839   ⟸   NM_001164367
- Peptide Label: isoform 2
- UniProtKB: G3UW57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245688   ⟸   XM_011247386
- Peptide Label: isoform X1
- UniProtKB: Q5HZI0 (UniProtKB/Swiss-Prot),   G3XA57 (UniProtKB/Swiss-Prot),   B9EID4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000059978   ⟸   ENSMUST00000051996
RefSeq Acc Id: ENSMUSP00000128813   ⟸   ENSMUST00000171986
RefSeq Acc Id: ENSMUSP00000133151   ⟸   ENSMUST00000170819
RefSeq Acc Id: XP_036017611   ⟸   XM_036161718
- Peptide Label: isoform X2
Protein Domains
C2   FIP-RBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3XA57-F1-model_v2 AlphaFold G3XA57 1-512 view protein structure

Promoters
RGD ID:13679902
Promoter ID:EPDNEW_M24100
Type:initiation region
Name:Rab11fip2_1
Description:Mus musculus RAB11 family interacting protein 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381959,943,658 - 59,943,718EPDNEW
RGD ID:6830349
Promoter ID:MM_KWN:27469
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001033172,   UC008IBM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361960,018,776 - 60,019,502 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922248 AgrOrtholog
Ensembl Genes ENSMUSG00000040022 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000051996 ENTREZGENE
  ENSMUST00000051996.13 UniProtKB/Swiss-Prot
  ENSMUST00000170819.2 UniProtKB/Swiss-Prot
  ENSMUST00000171986 ENTREZGENE
  ENSMUST00000171986.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.2440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FIP-RBD_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FIP_classI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74998 UniProtKB/Swiss-Prot
MGD MGI:1922248 ENTREZGENE
NCBI Gene 74998 ENTREZGENE
PANTHER PTHR15746 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB11 FAMILY-INTERACTING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD-FIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab11fip2 PhenoGen
PROSITE FIP_RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF144270 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B9EID4 ENTREZGENE
  G3UW57 ENTREZGENE, UniProtKB/TrEMBL
  G3XA57 ENTREZGENE
  Q3U366 ENTREZGENE, UniProtKB/TrEMBL
  Q5HZI0 ENTREZGENE
  RFIP2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B9EID4 UniProtKB/Swiss-Prot
  Q5HZI0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-28 Rab11fip2  RAB11 family interacting protein 2 (class I)  AW558126  expressed sequence AW558126  Data merged from RGD:1609989 737654 PROVISIONAL