Nup210l (nucleoporin 210-like) - Rat Genome Database

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Gene: Nup210l (nucleoporin 210-like) Mus musculus
Analyze
Symbol: Nup210l
Name: nucleoporin 210-like
RGD ID: 1617450
MGI Page MGI
Description: Involved in Sertoli cell development and spermatid development. Predicted to localize to nuclear pore. Orthologous to human NUP210L (nucleoporin 210 like); INTERACTS WITH 2,3',4,4',5-Pentachlorobiphenyl; mono(2-ethylhexyl) phthalate; sodium fluoride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 4930548O11Rik; nuclear pore membrane glycoprotein 210-like; nucleoporin 210 kDa-like; nucleoporin Nup210-like; R26-EGFP; Tg(Gt(ROSA)26Sor-EGFP)130910Eps
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,011,445 - 90,119,458 (+)NCBIGRCm39mm39
GRCm39 Ensembl390,011,439 - 90,119,355 (+)Ensembl
GRCm38390,101,007 - 90,212,151 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,104,132 - 90,212,048 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,908,054 - 90,015,939 (+)NCBIGRCm37mm9NCBIm37
MGSCv36390,190,094 - 90,297,944 (+)NCBImm8
Celera390,141,258 - 90,248,934 (+)NCBICelera
Cytogenetic Map3F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:10491262   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:20034429   PMID:21267068  
PMID:21873635  


Genomics

Comparative Map Data
Nup210l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,011,445 - 90,119,458 (+)NCBIGRCm39mm39
GRCm39 Ensembl390,011,439 - 90,119,355 (+)Ensembl
GRCm38390,101,007 - 90,212,151 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,104,132 - 90,212,048 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,908,054 - 90,015,939 (+)NCBIGRCm37mm9NCBIm37
MGSCv36390,190,094 - 90,297,944 (+)NCBImm8
Celera390,141,258 - 90,248,934 (+)NCBICelera
Cytogenetic Map3F1NCBI
NUP210L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1153,992,685 - 154,155,116 (-)EnsemblGRCh38hg38GRCh38
GRCh381153,992,582 - 154,155,116 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371153,965,166 - 154,127,592 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,231,790 - 152,394,216 (-)NCBINCBI36hg18NCBI36
Build 341150,778,233 - 150,925,401NCBI
Celera1127,036,912 - 127,199,334 (-)NCBI
Cytogenetic Map1q21.3NCBI
HuRef1125,327,720 - 125,490,936 (-)NCBIHuRef
CHM1_11155,361,483 - 155,523,936 (-)NCBICHM1_1
Nup210l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22175,545,999 - 175,665,332 (+)NCBI
Rnor_6.0 Ensembl2189,454,340 - 189,571,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02189,453,932 - 189,571,918 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02208,887,355 - 209,004,828 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,328,293 - 182,450,883 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12182,278,398 - 182,400,989 (+)NCBI
Celera2169,486,931 - 169,601,257 (+)NCBICelera
Cytogenetic Map2q34NCBI
Nup210l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545601,900 - 714,135 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545601,727 - 714,225 (-)NCBIChiLan1.0ChiLan1.0
NUP210L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11132,977,742 - 133,125,416 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,977,876 - 133,125,344 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01129,349,468 - 129,510,688 (-)NCBIMhudiblu_PPA_v0panPan3
NUP210L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,068,259 - 43,149,202 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,068,341 - 43,161,853 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,558,385 - 42,639,551 (+)NCBI
ROS_Cfam_1.0742,938,572 - 43,019,578 (+)NCBI
UMICH_Zoey_3.1742,717,262 - 42,798,244 (+)NCBI
UNSW_CanFamBas_1.0742,770,568 - 42,851,414 (+)NCBI
UU_Cfam_GSD_1.0743,054,663 - 43,135,759 (+)NCBI
Nup210l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,711,210 - 24,828,224 (-)NCBI
SpeTri2.0NW_0049365803,741,428 - 3,858,563 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP210L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,573,722 - 95,697,196 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,573,974 - 95,697,196 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,491,481 - 104,598,654 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP210L
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,671,203 - 9,821,257 (+)NCBI
ChlSab1.1 Ensembl209,671,482 - 9,815,252 (+)Ensembl
Nup210l
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248853,140,355 - 3,234,360 (+)NCBI

Position Markers
AU025987  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,127,329 - 90,127,851UniSTSGRCm38
MGSCv37389,931,251 - 89,931,773UniSTSGRCm37
Celera390,164,098 - 90,164,620UniSTS
Cytogenetic Map3F2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33200000142700000Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7521114102782718Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316000000109800000Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316450000130370000Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328900000119100000Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330013439147599053Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337120713143647422Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)341000000116000000Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)344000000101700000Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)352000000102400000Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352300000137500000Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356796681100556821Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35900000093000000Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36183275495832934Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366139351100139488Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)368000000128600000Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369661247103661247Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369718176100747974Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370301597104301735Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372232660106232787Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372232660106232787Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375555995109556242Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379641414113641521Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381177336115177481Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382239727116239868Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383556675117556821Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383556675117556821Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383556675117556821Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383556675117556821Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383556675117556821Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383556675117556821Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383556675117556821Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383975596117975728Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384981602118981751Mouse
14746984Manh54_mmandible shape 54 (mouse)385381836119381836Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387301597125522587Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387320699121320699Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389232660137747247Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:89
Interacting mature miRNAs:91
Transcripts:ENSMUST00000029548
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000029548   ⟹   ENSMUSP00000029548
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl390,104,132 - 90,212,017 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200410   ⟹   ENSMUSP00000143368
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl390,104,134 - 90,212,048 (+)Ensembl
RefSeq Acc Id: NM_029937   ⟹   NP_084213
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,011,445 - 90,119,458 (+)NCBI
GRCm38390,104,138 - 90,212,151 (+)NCBI
MGSCv37389,908,054 - 90,015,939 (+)RGD
Celera390,141,258 - 90,248,934 (+)RGD
cM Map3 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_084213 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB31846 (Get FASTA)   NCBI Sequence Viewer  
  Q9D2F7 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_084213   ⟸   NM_029937
- Peptide Label: precursor
- UniProtKB: Q9D2F7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000029548   ⟸   ENSMUST00000029548
RefSeq Acc Id: ENSMUSP00000143368   ⟸   ENSMUST00000200410
Protein Domains
BIG2

Promoters
RGD ID:6834175
Promoter ID:MM_KWN:35005
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ENSMUST00000029548,   UC008QBK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36389,907,929 - 89,908,429 (+)MPROMDB
RGD ID:6881326
Promoter ID:EPDNEW_M4105
Type:initiation region
Name:Nup210l_1
Description:Mus musculus nucleoporin 210-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38390,104,138 - 90,104,198EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924845 AgrOrtholog
Ensembl Genes ENSMUSG00000027939 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000029548 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000143368 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029548 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000200410 UniProtKB/TrEMBL
InterPro Big_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Invasin/intimin_cell_adhesion UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:77595 UniProtKB/Swiss-Prot
MGD MGI:1924845 ENTREZGENE
NCBI Gene 77595 ENTREZGENE
Pfam Big_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nup210l PhenoGen
SMART BID_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49373 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JFZ8_MOUSE UniProtKB/TrEMBL
  P210L_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE