Pnrc1 (proline-rich nuclear receptor coactivator 1)

Gene: Pnrc1 (proline-rich nuclear receptor coactivator 1) Mus musculus

Analyze

Symbol:

Pnrc1

Name:

proline-rich nuclear receptor coactivator 1

RGD ID:

1617426

MGI Page

MGI

Description:

Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to be active in P-body and nucleus. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human PNRC1 (proline rich nuclear receptor coactivator 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

5730463C12Rik; B4-2; P; Prol2; proline rich 2; PRR2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	33,245,423 - 33,248,787 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	33,245,423 - 33,290,163 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	33,245,423 - 33,248,787 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	33,245,423 - 33,290,163 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	33,332,398 - 33,335,762 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	33,573,848 - 33,577,123 (-)	NCBI		MGSCv36	mm8
Celera	4	32,996,763 - 33,000,127 (-)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	14.75	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

COVID-19 (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3',4,4',5-Pentachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3H-1,2-dithiole-3-thione (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (ISO)

ammonium chloride (ISO)

Aroclor 1254 (EXP)

arsenous acid (ISO)

azoxystrobin (ISO)

beta-naphthoflavone (ISO)

bexarotene (ISO)

biochanin A (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP,ISO)

carbamazepine (ISO)

carbon nanotube (EXP)

CGP 52608 (ISO)

chlordecone (EXP)

chlorpyrifos (EXP,ISO)

choline (EXP)

ciglitazone (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

daidzein (ISO)

decabromodiphenyl ether (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (EXP)

dibutyl phthalate (EXP)

dieldrin (ISO)

diethylstilbestrol (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

epoxiconazole (EXP)

ethanol (EXP,ISO)

ethyl methanesulfonate (ISO)

flutamide (ISO)

folic acid (EXP)

FR900359 (ISO)

fulvestrant (ISO)

gamma-hexachlorocyclohexane (ISO)

genistein (ISO)

gentamycin (ISO)

glyphosate (ISO)

hydrogen peroxide (ISO)

imidacloprid (ISO)

indole-3-methanol (ISO)

inulin (EXP)

irinotecan (ISO)

kenpaullone (ISO)

L-methionine (EXP)

Licochalcone B (ISO)

methimazole (ISO)

methyl methanesulfonate (ISO)

N-acetyl-L-cysteine (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-methylformamide (EXP)

N-nitrosodiethylamine (EXP,ISO)

nefazodone (ISO)

nickel dichloride (ISO)

niclosamide (ISO)

nimesulide (ISO)

ochratoxin A (ISO)

ozone (EXP)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (EXP,ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (EXP,ISO)

pregnenolone 16alpha-carbonitrile (ISO)

resveratrol (ISO)

rotenone (ISO)

silicon dioxide (EXP,ISO)

sirolimus (ISO)

sodium arsenite (ISO)

Soman (ISO)

sulfadimethoxine (ISO)

tetrachloromethane (EXP)

thiabendazole (ISO)

thioacetamide (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (IBA)

Cellular Component

nucleus (IBA)

P-body (IBA)

Molecular Function

molecular_function (ND)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:14681479	PMID:15782199	PMID:16141072
PMID:16141073	PMID:18799693	PMID:20059953	PMID:21873635	PMID:24146773	PMID:25737280

Genomics

Comparative Map Data

Pnrc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	33,245,423 - 33,248,787 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	33,245,423 - 33,290,163 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	33,245,423 - 33,248,787 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	33,245,423 - 33,290,163 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	33,332,398 - 33,335,762 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	33,573,848 - 33,577,123 (-)	NCBI		MGSCv36	mm8
Celera	4	32,996,763 - 33,000,127 (-)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	14.75	NCBI

PNRC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	89,080,751 - 89,085,160 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	89,080,751 - 89,085,160 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	89,790,470 - 89,794,879 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	89,847,216 - 89,851,598 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	89,847,215 - 89,851,598	NCBI
Celera	6	90,208,316 - 90,212,762 (+)	NCBI		Celera
Cytogenetic Map	6	q15	NCBI
HuRef	6	87,006,056 - 87,010,503 (+)	NCBI		HuRef
CHM1_1	6	89,888,386 - 89,892,850 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	90,289,414 - 90,293,820 (+)	NCBI		T2T-CHM13v2.0

Pnrc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	52,443,400 - 52,489,303 (-)	NCBI		GRCr8
mRatBN7.2	5	47,647,070 - 47,657,832 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	47,647,071 - 47,650,161 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	49,797,168 - 49,800,257 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	51,396,352 - 51,399,441 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	51,339,769 - 51,342,858 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	48,501,472 - 48,504,511 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	48,501,472 - 48,504,511 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	53,083,531 - 53,086,570 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	49,544,328 - 49,547,367 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	49,544,521 - 49,547,546 (-)	NCBI
Celera	5	46,406,810 - 46,409,849 (-)	NCBI		Celera
Cytogenetic Map	5	q21	NCBI

Pnrc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	15,837,747 - 15,840,641 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	15,837,491 - 15,841,277 (+)	NCBI	ChiLan1.0	ChiLan1.0

PNRC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	109,155,234 - 109,162,240 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	107,055,308 - 107,062,324 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	86,952,996 - 86,957,772 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	90,228,759 - 90,233,465 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	90,229,145 - 90,233,465 (+)	Ensembl	panpan1.1		panPan2

PNRC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	48,339,946 - 48,344,026 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	48,339,346 - 48,415,732 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	48,147,075 - 48,151,164 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	49,145,758 - 49,149,868 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	12	48,465,046 - 48,469,146 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	48,363,458 - 48,367,560 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	48,555,454 - 48,559,556 (+)	NCBI		UU_Cfam_GSD_1.0

Pnrc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	83,358,097 - 83,361,754 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936510	3,107,147 - 3,112,813 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936510	3,109,114 - 3,112,616 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PNRC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	57,128,303 - 57,136,135 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	57,128,100 - 57,132,071 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	63,827,091 - 63,828,185 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PNRC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	13,846,691 - 13,850,785 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	13,846,864 - 13,850,141 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	190,163,279 - 190,167,376 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pnrc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624799	5,097,809 - 5,100,507 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624799	5,097,175 - 5,100,692 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pnrc1
67 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	304
Count of miRNA genes:	180
Interacting mature miRNAs:	192
Transcripts:	ENSMUST00000049357, ENSMUST00000137589, ENSMUST00000155616
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
1302010	Wta1_m	weight adult 1 (mouse)			Not determined		4	8683240	42683429	Mouse
1558992	Ses8_m	salmonella enteritidis susceptibility 8 (mouse)			Not determined		4	8683240	42683429	Mouse
1301473	Triglq1_m	triglyceride QTL 1 (mouse)			Not determined		4	8683240	42683429	Mouse
1302125	Lxw1_m	lupus BXSB x NZW 1 (mouse)			Not determined		4	8683240	42683429	Mouse
4141302	Ssrq5_m	stress response QTL 5 (mouse)			Not determined			8683240	42683430	Mouse
10401905	Sicd3_m	seizure-induced cell death 3 (mouse)			Not determined		4	9395525	43760862	Mouse
10401115	Pgia35_m	proteoglycan induced arthritis 35 (mouse)			Not determined		4	12562377	46562509	Mouse
12880405	Jcdq1_m	joint cartilage degeneration QTL 1 (mouse)					4	12562377	46562509	Mouse
4142318	Lyr2_m	lymphoma resistance 2 (mouse)			Not determined			14010457	63283678	Mouse
4142047	Mvwf3_m	modifier of von Willebrand factor 3 (mouse)			Not determined			14010457	117072206	Mouse
1301203	Alcp8_m	alcohol preference locus 8 (mouse)			Not determined		4	17395160	51395290	Mouse
1301237	Alcp7_m	alcohol preference locus 7 (mouse)			Not determined		4	17395160	51395290	Mouse
4141555	Nbwa2_m	NZB and NZW autoimmunity 2 (mouse)			Not determined		4	17892515	51892635	Mouse
4141911	W6q15_m	weight 6 weeks QTL 15 (mouse)			Not determined			17892616	88982216	Mouse
39128211	Lwq22_m	liver weight QTL 22 (mouse)					4	17892616	88982216	Mouse
1357453	Kidq4_m	kidney weight QTL 4 (mouse)			Not determined		4	17892616	88982216	Mouse
25440481	Moaq1_m	modifier of alien QTL 1 (mouse)					4	19500000	46000000	Mouse
1302058	Hrtfm3_m	heart failure modifier 3 (mouse)			Not determined		4	22111944	56112145	Mouse
1300769	Pcyts2_m	plasmacytoma susceptibility 2 (mouse)			Not determined		4	22111944	56112145	Mouse
1301437	Scon1_m	sucrose consumption 1 (mouse)			Not determined		4	22373448	56373612	Mouse
1302075	Bdln6_m	body length 6 (mouse)			Not determined		4	22373448	56373612	Mouse
1301697	Sluc18_m	susceptibility to lung cancer 18 (mouse)			Not determined		4	22373448	56373612	Mouse
1302184	Aaom1_m	autoimmune aoritis in MRL mice 1 (mouse)			Not determined		4	24322299	46332776	Mouse
1300574	Im2_m	immunoregulatory 2 (mouse)			Not determined		4	28077682	62077816	Mouse
1301586	Stheal3_m	soft tissue heal 3 (mouse)			Not determined		4	28658442	62658566	Mouse
1357877	Synch1_m	synechia 1 (mouse)			Not determined		4	28709925	62710107	Mouse
1301990	Arvm1_m	autoimmune renal vasculitis 1 (mouse)			Not determined		4	29332646	63332776	Mouse
12903995	Opfaq2_m	open field activity QTL 2 (mouse)					4	30343419	33824057	Mouse

Markers in Region

Pnrc1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	33,245,641 - 33,246,459	UniSTS	GRCm38
MGSCv37	4	33,332,616 - 33,333,434	UniSTS	GRCm37
Celera	4	32,996,981 - 32,997,799	UniSTS
Cytogenetic Map	4	A5	UniSTS
cM Map	4		UniSTS

UniSTS:234890

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	33,245,516 - 33,245,719	UniSTS	GRCm38
MGSCv37	4	33,332,491 - 33,332,694	UniSTS	GRCm37
Celera	4	32,996,856 - 32,997,059	UniSTS
Cytogenetic Map	4	A5	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036163568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK040358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK087995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK159693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK205114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL670464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW456607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC021878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC038496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK031485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000049357 ⟹ ENSMUSP00000040377

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	33,245,423 - 33,248,510 (-)	Ensembl
GRCm38.p6 Ensembl	4	33,245,423 - 33,248,510 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000137589

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	33,246,012 - 33,290,163 (-)	Ensembl
GRCm38.p6 Ensembl	4	33,246,012 - 33,290,163 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000155616

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	33,246,004 - 33,247,575 (-)	Ensembl
GRCm38.p6 Ensembl	4	33,246,004 - 33,247,575 (-)	Ensembl

RefSeq Acc Id:

NM_001033225 ⟹ NP_001028397

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	33,245,423 - 33,248,787 (-)	NCBI
GRCm38	4	33,245,423 - 33,248,787 (-)	ENTREZGENE
MGSCv37	4	33,332,398 - 33,335,762 (-)	RGD
Celera	4	32,996,763 - 33,000,127 (-)	RGD
cM Map	4		ENTREZGENE

Sequence:

show sequence

GCTACCCCAAAGGATCGCTGCCAGGGAGGTGAGGCAGAAGTCGAACTTCATTGTTCACGGGACA
CTCTCGGTAAGAGCCCGTTGGGCGCGCCTGCGCAACGTGCGCTCTTTGTGAAGGGCTGCAGCAG
GCTGCTTGTTTGTGTCTTGCCTCGGGGCGCGGAGGCGGGACCGAGGGAGTGGCCTGGCAGGCGC
ACGCGGATTGGGCCGCCGCAGGGAGGTGGGCGGGCACGGGGCGGGGCCTCGGGTAACAACACTG
GCCGCGGTGGCCAGCGCTATTTGTTGCTGCGCCGCCTCGCCCGAGTCATGGTCCTTGCTCCGAA
CCTTCCAGCAGCAGCCTCCGCCGCCGCCCCGTGACTCCTGCTCCCCGCCTTTCTGCCGAGTCCC
CGCGCCATGACCGTCGTCTCCGTCCCACAGCGAGATCTCGCTCTGAGCGGCCGCTTAGCGCCGC
TCGGGTTCCTCGGGGCCCTCCCGATGGTGAACCCGGCCCCGCCGCCCTTGCCGCGCCTTCCGGA
CCCGCGCGCGCTGCCACCCACCCTCTTCCTGCCGCACTTCCTCGGGGGGGACGGGCCGTGCCTG
GCGCCCGCGCCTCGCACCACCGCGCCGTCCGGCTGCACCTTGGCCCCGGCGGCTGCCCCGCGGG
CGGCGCCCAAGAAGCGGCGGAAGAAAAAGGTGCGGGCCAGCCCGGCCGGGCAGCTGCCCAGCCG
CTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCGCAGCCCGGCGCCGGGGCCA
ATCGTCGCGCAGGAGGAGCGAGGTCTGGCGGCCACTGCCCTGCTCCACAGACAGCCCCCACTCG
CGAAGGAGGTTTTAAAATCAAAGATGGGAAAATCGGAGAAAATTGCCCTTCCCCACAGCCAGCT
TGTGCATGGTATACACTTGTGTGAACAACCAAAGATAAACAGACAGAAAAGCAAATACAACTTG
CCACTAACCAAGATCACCTCTGCAAAAAGGAATGAAAGTGACTTTTGGCAGGATTCTGCTTCCT
CCGATCGAATGCAGAAGCAGGAAAAAAAGTCTTTTAAAAATACTGAGAACATTAAAAGTAACCA
TTTGAAGAAATCAGCATTTCTAACAGAAGTGAGCCAAAAGGAAAATTACGCCGGAGCAAAGTTC
AGTGACCCACCTTCCCCTAGTGTCCTCCCAAAGCCTCCGAGTCACTGGATGGGAAGTACCGCCG
AGAACCCCAGCCAGAGCCGGGAGCTGATGGCAGTGCACTTGAAAACGCTCCTCAAGGTGCAGAC
CTAGGCTTGCGTCTGCAGTGTGTGGTAAACATCGATTTCCCCAGACCTTTGGACTCGAAAGGAA
ACGGATACAGCAGTGAAAACTTGCCCTGTTGCAGCATCCGACACAATGAGCTTAAGTCACACAA
GCAGCTTGTATTATATTTTATATTTTGTAAATACTGTATACCATGTATTATGTGTACATTGTTC
ATACTTGAGAGGACATTATAGTTTTGTTATGAAAGTATGTATTTTGCCCTGCAGCTGTGGTGGT
GTTTTGTATATATACAGTGGAGATAGTCTAAGTGGGTGCTAAGGCACATGGAAGACTGTTTATT
TGCACAGGTACCGAAATTTTTTTAAGAACAGCTGTCAAATCTCAAAAGTGAAGATGTAACTGTG
AACAATTTCCTTATGTACTACTGAAGGTGAAATTCGGCACAATCACTGTAATCATGGAGTCTGT
GTTGCTCTAAATTGACAACTTGACTTTTAATCTGCAATTCCTAGAAAGCTTCCCGTTTTTACCA
AACTTCATTTCTGGATATTGGTATATTGCCATTATGGAGATTTAAAACACCTCTAATTTTAAAT
ACCAACAAAATTGGTTGTAATCAAATTTTAAATCAATAATAATAATTTGGCCTCCCCCCTTTTA
AGGTAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_036163568 ⟹ XP_036019461

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	33,245,427 - 33,247,839 (-)	NCBI

Sequence:

show sequence

GCCGCCCATTGGCTCCGGAGCCAGCCAATGGGAGCGGCGGCTACGGCCCAGCAACAGCCTGCAT
TTAGAAGCTTGGCGGCGCTCCAGGGGGTTTCGGCGTTCGGGGCTCAGGGACCTGCGGAGGGCTG
ACGTCAGCCCGCTACGTGCAGCGCTCTGGGGCGCTCATGAAGGCGGTGCTGGGTGGGGGCGGAG
GCGCAGGCGCAGGCGCGGTGCCCAGTGGGGCACCGGGCGGGCGGGACCCACGCACAGCCAGATC
CGCTGAGTCGGACTGCTGTTGGGAAGTTGGCAGGAGTCTCCGTCTGATGCCCGACGCGAAGGTG
TCCCGGGCCCTGTGCAGGCCGGCACGAGCTTGCCTCGCTGGAGGGGGCTTCTAAGCAGCGCCCT
GAATGAGTTTTTAGAAGTTATAAAATGGACTCCTCGGTTAACGGATCTGGATAACTGGGATACA
GTTTTGTCGAGGCTAAAGGATTTGAGAGTTGTCTTAGCATGAAAAACAAAAGCCGAAACCACCT
TTTTCATACAGCTTGAAGAATTCTTTGTTGGTAGTGACACGAAAAGCAGCCATTGTACTGAAAT
TGTACTTGATCAAGATGTGCCCATGAAGAGGAATAAGAATTTAGATCCTGAAGTGGTTTTTTGT
TTGGTTTGGTTTGGTTTTTAGTTTTTCAGACAGGCACTTGCATTAGCTTAGAACTCACTGTACA
TTGGAGAAGATTCTATTTTTCAGAGGCAGTTTTGAACGGGAAAGACAGTATGACCTTGTACTTG
GGTCTCAGTTTTTGTGTCCTTACTATATCATGCAAGCATCAGAGGGGCAGTGATCTAAGGGTGT
TTTCATTTGGTGCACATTTCTGTAGATTATGCTGGGAAAGTTACTACAGTGCAAAAGTTTGTGG
CCTGTTAGGATTCGGGCTGTAGCCCCGGCTGGCCTGGAATTTACCTTTCTGCTTCTGCCTTACA
GACCTTTTGGCTGAGCTTAGAAGGTCGTCCATGAAGTTGCTGAATCTGAAAGGCAGACGGGAAC
TTTTTTTCTAACCTATAGAGGACACTTGTTCCTTACTGTTGTTTACAGTTAGAAAAGATGGACA
TTGAGTTTTTTTTAAGTGATATTTTTCTGAATGTTTTAAAATCAAAGATGGGAAAATCGGAGAA
AATTGCCCTTCCCCACAGCCAGCTTGTGCATGGTATACACTTGTGTGAACAACCAAAGATAAAC
AGACAGAAAAGCAAATACAACTTGCCACTAACCAAGATCACCTCTGCAAAAAGGAATGAAAGTG
ACTTTTGGCAGGATTCTGCTTCCTCCGATCGAATGCAGAAGCAGGAAAAAAAGTCTTTTAAAAA
TACTGAGAACATTAAAAGTAACCATTTGAAGAAATCAGCATTTCTAACAGAAGTGAGCCAAAAG
GAAAATTACGCCGGAGCAAAGTTCAGTGACCCACCTTCCCCTAGTGTCCTCCCAAAGCCTCCGA
GTCACTGGATGGGAAGTACCGCCGAGAACCCCAGCCAGAGCCGGGAGCTGATGGCAGTGCACTT
GAAAACGCTCCTCAAGGTGCAGACCTAGGCTTGCGTCTGCAGTGTGTGGTAAACATCGATTTCC
CCAGACCTTTGGACTCGAAAGGAAACGGATACAGCAGTGAAAACTTGCCCTGTTGCAGCATCCG
ACACAATGAGCTTAAGTCACACAAGCAGCTTGTATTATATTTTATATTTTGTAAATACTGTATA
CCATGTATTATGTGTACATTGTTCATACTTGAGAGGACATTATAGTTTTGTTATGAAAGTATGT
ATTTTGCCCTGCAGCTGTGGTGGTGTTTTGTATATATACAGTGGAGATAGTCTAAGTGGGTGCT
AAGGCACATGGAAGACTGTTTATTTGCACAGGTACCGAAATTTTTTTAAGAACAGCTGTCAAAT
CTCAAAAGTGAAGATGTAACTGTGAACAATTTCCTTATGTACTACTGAAGGTGAAATTCGGCAC
AATCACTGTAATCATGGAGTCTGTGTTGCTCTAAATTGACAACTTGACTTTTAATCTGCAATTC
CTAGAAAGCTTCCCGTTTTTACCAAACTTCATTTCTGGATATTGGTATATTGCCATTATGGAGA
TTTAAAACACCTCTAATTTTAAATACCAACAAAATTGGTTGTAATCAAATTTTAAATCAATAAT
AATAATTTGGCCTCCCCCCTTTTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001028397	(Get FASTA)	NCBI Sequence Viewer
	XP_036019461	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAE35293	(Get FASTA)	NCBI Sequence Viewer
	BAE35724	(Get FASTA)	NCBI Sequence Viewer
	EDL05486	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000040377
	ENSMUSP00000040377.10

RefSeq Acc Id:

NP_001028397 ⟸ NM_001033225

- UniProtKB:

Q3TWH3 (UniProtKB/TrEMBL), Q3TV95 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTVVSVPQRDLALSGRLAPLGFLGALPMVNPAPPPLPRLPDPRALPPTLFLPHFLGGDGPCLAP
APRTTAPSGCTLAPAAAPRAAPKKRRKKKVRASPAGQLPSRFHQFQQHRPSLEGGRSPAPGPIV
AQEERGLAATALLHRQPPLAKEVLKSKMGKSEKIALPHSQLVHGIHLCEQPKINRQKSKYNLPL
TKITSAKRNESDFWQDSASSDRMQKQEKKSFKNTENIKSNHLKKSAFLTEVSQKENYAGAKFSD
PPSPSVLPKPPSHWMGSTAENPSQSRELMAVHLKTLLKVQT

hide sequence

RefSeq Acc Id:

ENSMUSP00000040377 ⟸ ENSMUST00000049357

RefSeq Acc Id:	XP_036019461 ⟸ XM_036163568
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3TWH3-F1-model_v2	AlphaFold	Q3TWH3	1-297	view protein structure

Promoters

RGD ID:

6882990

Promoter ID:

EPDNEW_M4946

Type:

initiation region

Name:

Pnrc1_1

Description:

Mus musculus proline-rich nuclear receptor coactivator 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	33,248,509 - 33,248,569	EPDNEW

RGD ID:

6849160

Promoter ID:

MM_XEF:4895

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Kidney, Lung, MEF_B6

Transcripts:

NM_001012291

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	4	33,332,991 - 33,333,491 (-)	MPROMDB

RGD ID:

6835882

Promoter ID:

MM_KWN:37006

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_001033225, OTTMUST00000070849

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	4	33,334,351 - 33,336,407 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1917838	AgrOrtholog
Ensembl Genes	ENSMUSG00000040128	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000049357	ENTREZGENE
	ENSMUST00000049357.10	UniProtKB/TrEMBL
InterPro	PNRC1/2	UniProtKB/TrEMBL
KEGG Report	mmu:108767	UniProtKB/TrEMBL
MGD	MGI:1917838	ENTREZGENE
NCBI Gene	108767	ENTREZGENE
PANTHER	PROLINE-RICH NUCLEAR RECEPTOR COACTIVATOR 1	UniProtKB/TrEMBL
	PTHR15405	UniProtKB/TrEMBL
Pfam	PNRC	UniProtKB/TrEMBL
PhenoGen	Pnrc1	PhenoGen
UniProt	Q3TV95	ENTREZGENE, UniProtKB/TrEMBL
	Q3TWH3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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