Msantd5l (Myb/SANT DNA binding domain containing 5 like) - Rat Genome Database

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Gene: Msantd5l (Myb/SANT DNA binding domain containing 5 like) Mus musculus
Analyze
No known orthologs.
Symbol: Msantd5l (Ensembl: BC049762)
Name: Myb/SANT DNA binding domain containing 5 like (Ensembl:cDNA sequence BC049762)
RGD ID: 1617405
MGI Page MGI
Description: Orthologous to human MSANTD5 (Myb/SANT DNA binding domain containing 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930503F14; hypothetical protein LOC193286; uncharacterized protein LOC193286
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,144,472 - 51,154,489 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,144,478 - 51,153,873 (-)EnsemblGRCm39 Ensembl
GRCm381151,253,645 - 51,263,662 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,253,651 - 51,263,046 (-)EnsemblGRCm38mm10GRCm38
MGSCv371151,067,153 - 51,076,453 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361151,097,074 - 51,106,374 (-)NCBIMGSCv36mm8
Celera1155,813,431 - 55,822,731 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750  


Genomics

Variants

.
Variants in Msantd5l
400 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:83
Interacting mature miRNAs:97
Transcripts:ENSMUST00000054226, ENSMUST00000065950
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000054226   ⟹   ENSMUSP00000061848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,144,478 - 51,153,873 (-)Ensembl
GRCm38.p6 Ensembl1151,253,651 - 51,263,046 (-)Ensembl
RefSeq Acc Id: ENSMUST00000065950   ⟹   ENSMUSP00000071085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,144,478 - 51,153,778 (-)Ensembl
GRCm38.p6 Ensembl1151,253,651 - 51,262,951 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231433   ⟹   ENSMUSP00000155926
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1151,144,620 - 51,147,091 (-)Ensembl
GRCm38.p6 Ensembl1151,253,793 - 51,256,264 (-)Ensembl
RefSeq Acc Id: NM_001358279   ⟹   NP_001345208
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,144,472 - 51,153,884 (-)NCBI
GRCm381151,253,645 - 51,263,057 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358280   ⟹   NP_001345209
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,144,472 - 51,153,884 (-)NCBI
GRCm381151,253,645 - 51,263,057 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358281   ⟹   NP_001345210
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,144,472 - 51,154,489 (-)NCBI
GRCm381151,253,645 - 51,263,662 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358282   ⟹   NP_001345211
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,144,472 - 51,153,884 (-)NCBI
GRCm381151,253,645 - 51,263,057 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382322   ⟹   NP_001369251
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,144,472 - 51,153,831 (-)NCBI
GRCm381151,253,645 - 51,263,004 (-)NCBI
Sequence:
RefSeq Acc Id: NM_177567   ⟹   NP_808235
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391151,144,472 - 51,153,884 (-)NCBI
GRCm381151,253,645 - 51,263,057 (-)NCBI
MGSCv371151,067,153 - 51,076,453 (-)RGD
Celera1155,813,431 - 55,822,731 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_808235   ⟸   NM_177567
- Peptide Label: isoform 1
- UniProtKB: Q8C601 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001345210   ⟸   NM_001358281
- Peptide Label: isoform 2
- UniProtKB: A0A338P6D5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345209   ⟸   NM_001358280
- Peptide Label: isoform 1
- UniProtKB: Q8C601 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345211   ⟸   NM_001358282
- Peptide Label: isoform 1
- UniProtKB: Q8C601 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345208   ⟸   NM_001358279
- Peptide Label: isoform 1
- UniProtKB: Q8C601 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001369251   ⟸   NM_001382322
- Peptide Label: isoform 3
- UniProtKB: A0A338P6D5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000071085   ⟸   ENSMUST00000065950
RefSeq Acc Id: ENSMUSP00000155926   ⟸   ENSMUST00000231433
RefSeq Acc Id: ENSMUSP00000061848   ⟸   ENSMUST00000054226

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A338P6D5-F1-model_v2 AlphaFold A0A338P6D5 1-219 view protein structure

Promoters
RGD ID:6820482
Promoter ID:MM_KWN:7299
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000020652,   ENSMUST00000054226,   ENSMUST00000109118,   NM_177567,   OTTMUST00000012456,   OTTMUST00000077641,   OTTMUST00000077642,   OTTMUST00000077643,   OTTMUST00000077644,   OTTMUST00000077645,   UC007ITS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361151,076,471 - 51,077,207 (-)MPROMDB
RGD ID:8674540
Promoter ID:EPDNEW_M15300
Type:initiation region
Name:BC049762_1
Description:Mus musculus cDNA sequence BC049762 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381151,263,029 - 51,263,089EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3039622 AgrOrtholog
Ensembl Genes ENSMUSG00000045942 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000054226 ENTREZGENE
  ENSMUST00000054226.3 UniProtKB/TrEMBL
  ENSMUST00000065950 ENTREZGENE
  ENSMUST00000065950.10 UniProtKB/TrEMBL
  ENSMUST00000231433.2 UniProtKB/TrEMBL
MGD MGI:3039622 ENTREZGENE
NCBI Gene 193286 ENTREZGENE
PANTHER CDNA SEQUENCE BC049762 UniProtKB/TrEMBL
  GENE 12569-RELATED UniProtKB/TrEMBL
PhenoGen Msantd5l PhenoGen
UniProt A0A338P6D5 ENTREZGENE, UniProtKB/TrEMBL
  Q8C601 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-08-14 Msantd5l  Myb/SANT DNA binding domain containing 5 like  BC049762  cDNA sequence BC049762  Symbol and/or name updated 27372883 PROVISIONAL