Pms1 (PMS1 homolog 1, mismatch repair system component) - Rat Genome Database

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Gene: Pms1 (PMS1 homolog 1, mismatch repair system component) Mus musculus
Analyze
Symbol: Pms1
Name: PMS1 homolog 1, mismatch repair system component
RGD ID: 1617367
MGI Page MGI
Description: Predicted to enable ATP hydrolysis activity and enzyme binding activity. Acts upstream of or within mismatch repair. Predicted to be located in nucleus. Predicted to be part of MutLalpha complex. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; gut; and respiratory system. Human ortholog(s) of this gene implicated in Lynch syndrome; dermatomyositis; pancreatic ductal carcinoma; and polymyositis. Orthologous to human PMS1 (PMS1 homolog 1, mismatch repair system component).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC36491; PMS1 protein homolog 1; postmeiotic segregation increased 1; postmeiotic segregation increased 1 (S. cerevisiae)
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39153,225,794 - 53,336,190 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl153,228,346 - 53,336,177 (-)EnsemblGRCm39 Ensembl
GRCm38153,189,187 - 53,297,031 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl153,189,187 - 53,297,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv37153,246,031 - 53,353,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36153,133,732 - 53,241,541 (-)NCBIMGSCv36mm8
Celera153,728,483 - 53,836,401 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroperoxycyclophosphamide  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
asbestos  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cypermethrin  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (ISO)
gentamycin  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
mercury atom  (EXP)
mercury(0)  (EXP)
methotrexate  (EXP)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
succimer  (EXP)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
trovafloxacin  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. DNA mismatch repair defects: role in colorectal carcinogenesis. Jacob S and Praz F, Biochimie. 2002 Jan;84(1):27-47.
2. Mechanisms and functions of DNA mismatch repair. Li GM Cell Res. 2008 Jan;18(1):85-98.
3. Immune responses to DNA mismatch repair enzymes hMSH2 and hPMS1 in patients with pancreatic cancer, dermatomyositis and polymyositis. Okada T, etal., Int J Cancer. 2005 Oct 10;116(6):925-33.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9500552   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11223406   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15618518   PMID:16141072  
PMID:16141073   PMID:18287559   PMID:18799693   PMID:20211142   PMID:20412781   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24194600   PMID:24952961   PMID:26753533   PMID:28051769  
PMID:36952545  


Genomics

Comparative Map Data
Pms1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39153,225,794 - 53,336,190 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl153,228,346 - 53,336,177 (-)EnsemblGRCm39 Ensembl
GRCm38153,189,187 - 53,297,031 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl153,189,187 - 53,297,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv37153,246,031 - 53,353,840 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36153,133,732 - 53,241,541 (-)NCBIMGSCv36mm8
Celera153,728,483 - 53,836,401 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.99NCBI
PMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382189,784,450 - 189,877,629 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2189,784,085 - 189,877,629 (+)EnsemblGRCh38hg38GRCh38
GRCh372190,649,176 - 190,742,355 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362190,357,355 - 190,450,600 (+)NCBINCBI36Build 36hg18NCBI36
Build 342190,474,615 - 190,567,860NCBI
Celera2184,243,739 - 184,337,288 (+)NCBICelera
Cytogenetic Map2q32.2NCBI
HuRef2182,508,462 - 182,602,272 (+)NCBIHuRef
CHM1_12190,654,694 - 190,748,309 (+)NCBICHM1_1
T2T-CHM13v2.02190,273,733 - 190,366,996 (+)NCBIT2T-CHM13v2.0
Pms1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8955,721,393 - 55,832,225 (+)NCBIGRCr8
mRatBN7.2948,229,403 - 48,340,237 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl948,253,410 - 48,340,237 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx956,789,682 - 56,875,049 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0961,912,501 - 61,997,868 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0960,208,491 - 60,293,858 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0953,120,656 - 53,206,520 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl953,120,656 - 53,206,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0952,784,772 - 52,871,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4945,203,344 - 45,292,624 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1945,204,757 - 45,294,034 (+)NCBI
Celera945,919,538 - 46,005,758 (+)NCBICelera
Cytogenetic Map9q22NCBI
Pms1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554039,022,078 - 9,100,442 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554039,021,488 - 9,100,442 (-)NCBIChiLan1.0ChiLan1.0
PMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21392,475,954 - 92,566,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B92,490,937 - 92,581,763 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B77,090,215 - 77,180,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B195,010,233 - 195,100,492 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B195,010,233 - 195,100,492 (+)Ensemblpanpan1.1panPan2
PMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.137502,752 - 609,640 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl37502,747 - 790,904 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha371,475,758 - 1,583,050 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.037395,761 - 503,686 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl37395,722 - 503,685 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.137406,588 - 513,890 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.037375,065 - 482,126 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.037403,027 - 510,344 (+)NCBIUU_Cfam_GSD_1.0
Pms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303148,621,339 - 148,718,585 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365068,119,494 - 8,197,768 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365068,118,816 - 8,197,040 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1594,351,630 - 94,476,506 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11594,351,603 - 94,476,505 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215105,412,685 - 105,513,299 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11075,305,129 - 75,392,193 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1075,311,887 - 75,392,590 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040124,084,971 - 124,175,531 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Pms1
3901 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:363
Count of miRNA genes:281
Interacting mature miRNAs:305
Transcripts:ENSMUST00000027267, ENSMUST00000126412, ENSMUST00000126590, ENSMUST00000128337, ENSMUST00000133358, ENSMUST00000135246, ENSMUST00000142922
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_153556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ056105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000027267   ⟹   ENSMUSP00000027267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl153,228,346 - 53,336,177 (-)Ensembl
GRCm38.p6 Ensembl153,189,187 - 53,297,018 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126412   ⟹   ENSMUSP00000120340
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl153,321,106 - 53,336,174 (-)Ensembl
GRCm38.p6 Ensembl153,281,947 - 53,297,015 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126590   ⟹   ENSMUSP00000120670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl153,314,302 - 53,336,174 (-)Ensembl
GRCm38.p6 Ensembl153,275,143 - 53,297,015 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128337   ⟹   ENSMUSP00000115352
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl153,307,022 - 53,336,134 (-)Ensembl
GRCm38.p6 Ensembl153,267,863 - 53,296,975 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133358   ⟹   ENSMUSP00000122418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl153,314,280 - 53,321,567 (-)Ensembl
GRCm38.p6 Ensembl153,275,121 - 53,282,408 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135246   ⟹   ENSMUSP00000119632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl153,236,271 - 53,336,176 (-)Ensembl
GRCm38.p6 Ensembl153,197,112 - 53,297,017 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142922
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl153,302,054 - 53,336,126 (-)Ensembl
GRCm38.p6 Ensembl153,262,895 - 53,296,967 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl153,334,452 - 53,336,174 (-)Ensembl
GRCm38.p6 Ensembl153,295,293 - 53,297,015 (-)Ensembl
RefSeq Acc Id: NM_153556   ⟹   NP_705784
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39153,228,346 - 53,336,187 (-)NCBI
GRCm38153,189,187 - 53,297,028 (-)NCBI
MGSCv37153,246,031 - 53,353,840 (-)RGD
Celera153,728,483 - 53,836,401 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006495938   ⟹   XP_006496001
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39153,225,794 - 53,336,174 (-)NCBI
GRCm38153,189,187 - 53,297,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006495939   ⟹   XP_006496002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39153,225,794 - 53,336,174 (-)NCBI
GRCm38153,189,187 - 53,296,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006495941   ⟹   XP_006496004
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39153,225,794 - 53,336,138 (-)NCBI
GRCm38153,189,187 - 53,296,979 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006495942   ⟹   XP_006496005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39153,225,794 - 53,336,190 (-)NCBI
GRCm38153,189,187 - 53,297,031 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006495943   ⟹   XP_006496006
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39153,225,794 - 53,336,083 (-)NCBI
GRCm38153,189,187 - 53,296,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006495944   ⟹   XP_006496007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39153,225,794 - 53,336,131 (-)NCBI
GRCm38153,189,187 - 53,296,972 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238497   ⟹   XP_011236799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39153,225,794 - 53,336,166 (-)NCBI
GRCm38153,189,187 - 53,297,007 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164395   ⟹   XP_036020288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39153,225,794 - 53,336,131 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164396   ⟹   XP_036020289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39153,225,794 - 53,336,164 (-)NCBI
Sequence:
RefSeq Acc Id: NP_705784   ⟸   NM_153556
- UniProtKB: Q8K119 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496007   ⟸   XM_006495944
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006496005   ⟸   XM_006495942
- Peptide Label: isoform X1
- UniProtKB: Q8K119 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496004   ⟸   XM_006495941
- Peptide Label: isoform X1
- UniProtKB: Q8K119 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496006   ⟸   XM_006495943
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006496001   ⟸   XM_006495938
- Peptide Label: isoform X1
- UniProtKB: Q8K119 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496002   ⟸   XM_006495939
- Peptide Label: isoform X1
- UniProtKB: Q8K119 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011236799   ⟸   XM_011238497
- Peptide Label: isoform X1
- UniProtKB: Q8K119 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000027267   ⟸   ENSMUST00000027267
RefSeq Acc Id: ENSMUSP00000122418   ⟸   ENSMUST00000133358
RefSeq Acc Id: ENSMUSP00000120670   ⟸   ENSMUST00000126590
RefSeq Acc Id: ENSMUSP00000120340   ⟸   ENSMUST00000126412
RefSeq Acc Id: ENSMUSP00000119632   ⟸   ENSMUST00000135246
RefSeq Acc Id: ENSMUSP00000115352   ⟸   ENSMUST00000128337
RefSeq Acc Id: XP_036020289   ⟸   XM_036164396
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036020288   ⟸   XM_036164395
- Peptide Label: isoform X3
Protein Domains
HMG box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K119-F1-model_v2 AlphaFold Q8K119 1-917 view protein structure

Promoters
RGD ID:6873692
Promoter ID:EPDNEW_M297
Type:initiation region
Name:Pms1_1
Description:Mus musculus PMS1 homolog 1, mismatch repair system component, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38153,297,015 - 53,297,075EPDNEW
RGD ID:6818213
Promoter ID:MM_KWN:733
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000051803,   OTTMUST00000051804,   OTTMUST00000051984,   OTTMUST00000052022,   OTTMUST00000052023,   OTTMUST00000052024,   OTTMUST00000052025,   UC007AYX.1,   UC007AYZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36153,353,634 - 53,354,134 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1202302 AgrOrtholog
Ensembl Genes ENSMUSG00000026098 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027267 ENTREZGENE
  ENSMUST00000027267.14 UniProtKB/TrEMBL
  ENSMUST00000126412.2 UniProtKB/TrEMBL
  ENSMUST00000126590.2 UniProtKB/TrEMBL
  ENSMUST00000128337.8 UniProtKB/TrEMBL
  ENSMUST00000133358.2 UniProtKB/TrEMBL
  ENSMUST00000135246.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/TrEMBL
  3.30.565.10 UniProtKB/TrEMBL
InterPro DNA_mismatch_repair UniProtKB/TrEMBL
  DNA_mismatch_repair_C UniProtKB/TrEMBL
  DNA_mismatch_repair_CS UniProtKB/TrEMBL
  HATPase_C_sf UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  HMG_superfamily UniProtKB/TrEMBL
  MutL/Mlh/Pms UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
KEGG Report mmu:227099 UniProtKB/TrEMBL
MGD MGI:1202302 ENTREZGENE
NCBI Gene 227099 ENTREZGENE
PANTHER PMS1 PROTEIN HOMOLOG 1 UniProtKB/TrEMBL
  PTHR10073 UniProtKB/TrEMBL
Pfam DNA_mis_repair UniProtKB/TrEMBL
  HATPase_c_3 UniProtKB/TrEMBL
  HMG_box UniProtKB/TrEMBL
PhenoGen Pms1 PhenoGen
PROSITE DNA_MISMATCH_REPAIR_1 UniProtKB/TrEMBL
  HMG_BOX_2 UniProtKB/TrEMBL
SMART DNA_mis_repair UniProtKB/TrEMBL
  HMG UniProtKB/TrEMBL
Superfamily-SCOP ATP_bd_ATPase UniProtKB/TrEMBL
  HMG-box UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
UniProt D3YX04_MOUSE UniProtKB/TrEMBL
  D3Z012_MOUSE UniProtKB/TrEMBL
  D3Z0R7_MOUSE UniProtKB/TrEMBL
  D3Z611_MOUSE UniProtKB/TrEMBL
  E9Q8A5_MOUSE UniProtKB/TrEMBL
  Q3US89_MOUSE UniProtKB/TrEMBL
  Q8K119 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-08 Pms1  PMS1 homolog 1, mismatch repair system component    postmeiotic segregation increased 1 (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED