Otud7b (OTU domain containing 7B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Otud7b (OTU domain containing 7B) Mus musculus
Analyze
Symbol: Otud7b
Name: OTU domain containing 7B
RGD ID: 1617364
MGI Page MGI
Description: Enables K63-linked polyubiquitin modification-dependent protein binding activity and cysteine-type deubiquitinase activity. Involved in several processes, including negative regulation of canonical NF-kappaB signal transduction; negative regulation of transcription by RNA polymerase II; and protein K48-linked deubiquitination. Acts upstream of or within in utero embryonic development and protein deubiquitination. Located in cytoplasm. Orthologous to human OTUD7B (OTU deubiquitinase 7B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900060B22Rik; 4930463P07Rik; AI462125; cellular zinc finger anti-NF-kappa-B protein; CEZANNE; OTU domain-containing protein 7B; Trabid2; TRAF binding domain containing 2; Za20d; Za20d1; zinc finger A20 domain-containing protein 1; zinc finger protein Cezanne; zinc finger, A20 domain containing 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,011,759 - 96,068,446 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,011,839 - 96,068,446 (+)EnsemblGRCm39 Ensembl
GRCm38396,104,504 - 96,161,129 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,104,527 - 96,161,129 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,908,450 - 95,965,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,189,932 - 96,246,534 (+)NCBIMGSCv36mm8
Celera397,540,463 - 97,597,279 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.65NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12682062   PMID:14610273   PMID:16141072  
PMID:16141073   PMID:16778019   PMID:17967808   PMID:18281465   PMID:18799693   PMID:21097510   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23334419   PMID:23564640   PMID:25355043  
PMID:26903241   PMID:27996060   PMID:28190767   PMID:28489822   PMID:28880268   PMID:29539633   PMID:30973865   PMID:32325033   PMID:32438838   PMID:32748687   PMID:33599243   PMID:34050636  
PMID:37516734   PMID:38084712   PMID:38355793   PMID:38510130  


Genomics

Comparative Map Data
Otud7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,011,759 - 96,068,446 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,011,839 - 96,068,446 (+)EnsemblGRCm39 Ensembl
GRCm38396,104,504 - 96,161,129 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,104,527 - 96,161,129 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,908,450 - 95,965,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,189,932 - 96,246,534 (+)NCBIMGSCv36mm8
Celera397,540,463 - 97,597,279 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.65NCBI
OTUD7B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381149,937,812 - 150,067,653 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1149,937,812 - 150,010,726 (-)EnsemblGRCh38hg38GRCh38
GRCh371149,909,705 - 149,982,675 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,178,855 - 148,249,310 (-)NCBINCBI36Build 36hg18NCBI36
Build 341146,728,409 - 146,795,602NCBI
Celera1123,028,202 - 123,098,656 (-)NCBICelera
Cytogenetic Map1q21.2NCBI
HuRef1121,292,712 - 121,362,691 (-)NCBIHuRef
CHM1_11151,308,456 - 151,378,863 (-)NCBICHM1_1
T2T-CHM13v2.01149,062,296 - 149,192,273 (-)NCBIT2T-CHM13v2.0
Otud7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,350,811 - 186,411,461 (+)NCBIGRCr8
mRatBN7.22183,661,955 - 183,722,584 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,662,163 - 183,718,674 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,325,797 - 191,384,171 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,130,056 - 189,188,470 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02183,958,342 - 184,016,709 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,231,353 - 198,302,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,231,291 - 198,300,201 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,720,895 - 217,789,205 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,905,522 - 190,964,454 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12190,868,275 - 190,938,314 (+)NCBI
Celera2176,190,012 - 176,247,856 (+)NCBICelera
Cytogenetic Map2q34NCBI
Otud7b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955413751,546 - 812,605 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955413758,098 - 812,605 (+)NCBIChiLan1.0ChiLan1.0
OTUD7B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,828,379 - 99,901,338 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,583,331 - 99,653,002 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01125,282,599 - 125,355,441 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11128,941,260 - 129,005,678 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1128,944,782 - 128,976,474 (-)Ensemblpanpan1.1panPan2
OTUD7B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,225,640 - 59,280,875 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,229,362 - 59,280,934 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,672,817 - 58,728,223 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,221,922 - 60,277,210 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,221,941 - 60,276,960 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,071,375 - 59,126,610 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,155,099 - 59,210,354 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01759,882,202 - 59,937,666 (-)NCBIUU_Cfam_GSD_1.0
Otud7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,248,716 - 21,350,025 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936580278,257 - 338,526 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936580278,263 - 300,278 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OTUD7B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,054,426 - 99,114,162 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,054,426 - 99,111,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24108,609,708 - 108,632,906 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OTUD7B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603813,235,718 - 13,366,144 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Otud7b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,721,218 - 17,787,299 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477217,717,178 - 17,776,940 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Otud7b
1644 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7659
Count of miRNA genes:900
Interacting mature miRNAs:1289
Transcripts:ENSMUST00000035519, ENSMUST00000090785, ENSMUST00000098849, ENSMUST00000132980, ENSMUST00000135263, ENSMUST00000138206, ENSMUST00000146660
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse

Markers in Region
AI462125  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,156,841 - 96,156,946UniSTSGRCm38
MGSCv37395,960,764 - 95,960,869UniSTSGRCm37
Celera397,592,990 - 97,593,095UniSTS
Cytogenetic Map3F2.1UniSTS
Whitehead/MRC_RH31089.4UniSTS
UniSTS:234762  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,132,552 - 96,132,778UniSTSGRCm38
MGSCv37395,936,475 - 95,936,701UniSTSGRCm37
Celera397,568,719 - 97,568,945UniSTS
Cytogenetic Map3F2.1UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001025614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC092094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB596613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ696828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000035519   ⟹   ENSMUSP00000046413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,011,839 - 96,068,446 (+)Ensembl
GRCm38.p6 Ensembl396,104,527 - 96,161,129 (+)Ensembl
RefSeq Acc Id: ENSMUST00000090785   ⟹   ENSMUSP00000088291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,011,839 - 96,068,446 (+)Ensembl
GRCm38.p6 Ensembl396,104,527 - 96,161,129 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098849   ⟹   ENSMUSP00000096449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,014,399 - 96,068,446 (+)Ensembl
GRCm38.p6 Ensembl396,107,087 - 96,161,129 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132980   ⟹   ENSMUSP00000115699
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,011,839 - 96,048,829 (+)Ensembl
GRCm38.p6 Ensembl396,104,527 - 96,141,518 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,058,021 - 96,059,880 (+)Ensembl
GRCm38.p6 Ensembl396,150,704 - 96,152,563 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138206   ⟹   ENSMUSP00000121847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,011,839 - 96,051,636 (+)Ensembl
GRCm38.p6 Ensembl396,104,527 - 96,144,325 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146660
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,011,860 - 96,048,864 (+)Ensembl
GRCm38.p6 Ensembl396,104,548 - 96,141,553 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,011,858 - 96,038,338 (+)Ensembl
GRCm38.p6 Ensembl396,104,546 - 96,131,027 (+)Ensembl
RefSeq Acc Id: NM_001025613   ⟹   NP_001020784
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,839 - 96,068,446 (+)NCBI
GRCm38396,104,527 - 96,161,129 (+)NCBI
MGSCv37395,908,450 - 95,965,052 (+)RGD
Celera397,540,463 - 97,597,279 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001025614   ⟹   NP_001020785
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,839 - 96,068,446 (+)NCBI
GRCm38396,104,527 - 96,161,129 (+)NCBI
MGSCv37395,908,450 - 95,965,052 (+)RGD
Celera397,540,463 - 97,597,279 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501385   ⟹   XP_006501448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,816 - 96,068,446 (+)NCBI
GRCm38396,104,510 - 96,161,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501386   ⟹   XP_006501449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,822 - 96,068,446 (+)NCBI
GRCm38396,104,510 - 96,161,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501389   ⟹   XP_006501452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,816 - 96,068,446 (+)NCBI
GRCm38396,104,504 - 96,161,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319546   ⟹   XP_017175035
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,858 - 96,068,446 (+)NCBI
GRCm38396,104,546 - 96,161,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319548   ⟹   XP_017175037
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,796 - 96,068,446 (+)NCBI
GRCm38396,104,510 - 96,161,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252584   ⟹   XP_030108444
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,788 - 96,068,446 (+)NCBI
GRCm38396,104,510 - 96,161,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252585   ⟹   XP_030108445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,759 - 96,068,446 (+)NCBI
GRCm38396,104,518 - 96,161,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163068   ⟹   XP_036018961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,816 - 96,068,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163069   ⟹   XP_036018962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,816 - 96,068,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163070   ⟹   XP_036018963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,768 - 96,068,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163071   ⟹   XP_036018964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,822 - 96,068,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163072   ⟹   XP_036018965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,011,830 - 96,068,446 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001020784   ⟸   NM_001025613
- UniProtKB: Q8CFS0 (UniProtKB/Swiss-Prot),   B2RUR8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001020785   ⟸   NM_001025614
- UniProtKB: Q8CFS0 (UniProtKB/Swiss-Prot),   B2RUR8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006501449   ⟸   XM_006501386
- Peptide Label: isoform X1
- UniProtKB: Q8CFS0 (UniProtKB/Swiss-Prot),   B2RUR8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006501448   ⟸   XM_006501385
- Peptide Label: isoform X1
- UniProtKB: Q8CFS0 (UniProtKB/Swiss-Prot),   B2RUR8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006501452   ⟸   XM_006501389
- Peptide Label: isoform X1
- UniProtKB: Q8CFS0 (UniProtKB/Swiss-Prot),   B2RUR8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017175035   ⟸   XM_017319546
- Peptide Label: isoform X1
- UniProtKB: Q8CFS0 (UniProtKB/Swiss-Prot),   B2RUR8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017175037   ⟸   XM_017319548
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030108444   ⟸   XM_030252584
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030108445   ⟸   XM_030252585
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000088291   ⟸   ENSMUST00000090785
RefSeq Acc Id: ENSMUSP00000096449   ⟸   ENSMUST00000098849
RefSeq Acc Id: ENSMUSP00000121847   ⟸   ENSMUST00000138206
RefSeq Acc Id: ENSMUSP00000115699   ⟸   ENSMUST00000132980
RefSeq Acc Id: ENSMUSP00000046413   ⟸   ENSMUST00000035519
RefSeq Acc Id: XP_036018963   ⟸   XM_036163070
- Peptide Label: isoform X1
- UniProtKB: B2RUR8 (UniProtKB/Swiss-Prot),   Q8CFS0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036018961   ⟸   XM_036163068
- Peptide Label: isoform X1
- UniProtKB: B2RUR8 (UniProtKB/Swiss-Prot),   Q8CFS0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036018962   ⟸   XM_036163069
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036018964   ⟸   XM_036163071
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036018965   ⟸   XM_036163072
- Peptide Label: isoform X2
Protein Domains
OTU

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RUR8-F1-model_v2 AlphaFold B2RUR8 1-840 view protein structure

Promoters
RGD ID:6834182
Promoter ID:MM_KWN:35347
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001025613,   NM_001025614,   OTTMUST00000051993,   OTTMUST00000051994,   OTTMUST00000051995,   UC008QMC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,907,926 - 95,908,677 (+)MPROMDB
RGD ID:6834181
Promoter ID:MM_KWN:35348
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ENSMUST00000098849
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,910,011 - 95,910,511 (+)MPROMDB
RGD ID:6834183
Promoter ID:MM_KWN:35350
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000051996
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,954,056 - 95,954,757 (+)MPROMDB
RGD ID:6881634
Promoter ID:EPDNEW_M4268
Type:initiation region
Name:Otud7b_1
Description:Mus musculus OTU domain containing 7B , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4269  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38396,104,546 - 96,104,606EPDNEW
RGD ID:6881636
Promoter ID:EPDNEW_M4269
Type:single initiation site
Name:Otud7b_2
Description:Mus musculus OTU domain containing 7B , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4268  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38396,134,002 - 96,134,062EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2654703 AgrOrtholog
Ensembl Genes ENSMUSG00000038495 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035519 ENTREZGENE
  ENSMUST00000035519.12 UniProtKB/Swiss-Prot
  ENSMUST00000090785 ENTREZGENE
  ENSMUST00000090785.9 UniProtKB/Swiss-Prot
  ENSMUST00000098849 ENTREZGENE
  ENSMUST00000098849.3 UniProtKB/Swiss-Prot
  ENSMUST00000132980.8 UniProtKB/TrEMBL
  ENSMUST00000138206.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.4770 UniProtKB/Swiss-Prot
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro OTU_dom UniProtKB/Swiss-Prot
  UBA-like UniProtKB/TrEMBL
  Znf_A20 UniProtKB/Swiss-Prot
KEGG Report mmu:229603 UniProtKB/Swiss-Prot
MGD MGI:2654703 ENTREZGENE
NCBI Gene 229603 ENTREZGENE
PANTHER OTU DOMAIN-CONTAINING PROTEIN 7B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN THIOESTERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam OTU UniProtKB/Swiss-Prot
  UBA_4 UniProtKB/TrEMBL
  zf-A20 UniProtKB/Swiss-Prot
PhenoGen Otud7b PhenoGen
PROSITE OTU UniProtKB/Swiss-Prot
  ZF_A20 UniProtKB/Swiss-Prot
SMART ZnF_A20 UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  UBA_like UniProtKB/TrEMBL
UniProt B2RUR8 ENTREZGENE
  D3YYZ8_MOUSE UniProtKB/TrEMBL
  D3Z210_MOUSE UniProtKB/TrEMBL
  OTU7B_MOUSE UniProtKB/Swiss-Prot
  Q8CFS0 ENTREZGENE
UniProt Secondary Q8CFS0 UniProtKB/Swiss-Prot