4933427D06Rik (RIKEN cDNA 4933427D06 gene) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: 4933427D06Rik (RIKEN cDNA 4933427D06 gene) Mus musculus
Analyze
Symbol: 4933427D06Rik
Name: RIKEN cDNA 4933427D06 gene
RGD ID: 1617349
MGI Page MGI
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Chromosome 13q Deletion Syndrome (ortholog); chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); INTERACTS WITH antirheumatic drug (ortholog); valproic acid (ortholog)
Type: ncrna
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC232217; MGC107427; uncharacterized protein LOC232217
RGD Orthologs
Human
Rat
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39689,073,092 - 89,087,021 (+)NCBIGRCm39mm39
GRCm38689,096,110 - 89,110,039 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,950,683 - 89,110,031 (+)EnsemblGRCm38mm10GRCm38
MGSCv37689,046,109 - 89,060,031 (+)NCBIGRCm37mm9NCBIm37
MGSCv36689,061,821 - 89,075,671 (+)NCBImm8
Celera691,033,099 - 91,047,071 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:15317747   PMID:16141072   PMID:16141073   PMID:21677750  
PMID:29459677  


Genomics

Comparative Map Data
4933427D06Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39689,073,092 - 89,087,021 (+)NCBIGRCm39mm39
GRCm38689,096,110 - 89,110,039 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,950,683 - 89,110,031 (+)EnsemblGRCm38mm10GRCm38
MGSCv37689,046,109 - 89,060,031 (+)NCBIGRCm37mm9NCBIm37
MGSCv36689,061,821 - 89,075,671 (+)NCBImm8
Celera691,033,099 - 91,047,071 (+)NCBICelera
Cytogenetic Map6D1NCBI
PRR20E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1357,167,197 - 57,170,218 (+)EnsemblGRCh38hg38GRCh38
GRCh381357,167,197 - 57,170,218 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371357,741,331 - 57,744,352 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361356,639,332 - 56,642,353 (+)NCBINCBI36hg18NCBI36
Cytogenetic Map13q21.1NCBI
Prr20e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24121,566,632 - 121,574,734 (+)NCBI
Rnor_6.0 Ensembl4121,046,277 - 121,052,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04121,040,810 - 121,053,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04186,280,312 - 186,293,819 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44123,199,122 - 123,205,658 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4110,513,416 - 110,526,620 (+)NCBICelera
Cytogenetic Map4q34NCBI
PRR20E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v01338,340,469 - 38,342,105 (+)NCBIMhudiblu_PPA_v0panPan3

Position Markers
UniSTS:235493  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38689,109,517 - 89,109,759UniSTSGRCm38
MGSCv37689,059,511 - 89,059,753UniSTSGRCm37
Celera691,046,551 - 91,046,793UniSTS
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1600
Count of miRNA genes:471
Interacting mature miRNAs:551
Transcripts:ENSMUST00000068968, ENSMUST00000153517, ENSMUST00000153981, ENSMUST00000168837
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000068968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,096,110 - 89,110,031 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153517
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,096,110 - 89,107,834 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153981
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl689,101,018 - 89,108,121 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168837
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,950,683 - 89,110,030 (+)Ensembl
RefSeq Acc Id: NR_134977
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39689,073,092 - 89,087,021 (+)NCBI
GRCm38689,096,110 - 89,110,039 (+)NCBI
Sequence:
RefSeq Acc Id: NR_134978
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39689,073,092 - 89,087,021 (+)NCBI
GRCm38689,096,110 - 89,110,039 (+)NCBI
Sequence:
RefSeq Acc Id: NR_134979
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39689,078,000 - 89,087,021 (+)NCBI
GRCm38689,101,018 - 89,110,039 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAH98480 (Get FASTA)   NCBI Sequence Viewer  
  BAC26859 (Get FASTA)   NCBI Sequence Viewer  
  EDK99263 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences

Promoters
RGD ID:6838755
Promoter ID:MM_KWN:46840
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_175017,   OTTMUST00000066797
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36689,045,971 - 89,046,471 (+)MPROMDB
RGD ID:6890392
Promoter ID:EPDNEW_M8647
Type:initiation region
Name:4933427D06Rik_1
Description:Mus musculus RIKEN cDNA 4933427D06 gene , transcript variant3, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38689,096,110 - 89,096,170EPDNEW
RGD ID:15093129
Promoter ID:EPDNEWNC_M1029
Type:single initiation site
Name:4933427D06Rik_1
Description:RIKEN cDNA 4933427D06 gene [Source:MGISymbol;Acc:MGI:3026922]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38689,096,110 - 89,096,170EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000055403 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000068968 ENTREZGENE
InterPro PRR20 UniProtKB/TrEMBL
MGD MGI:3026922 ENTREZGENE
NCBI Gene 232217 ENTREZGENE
PANTHER PTHR38819 UniProtKB/TrEMBL
Pfam PRR20 UniProtKB/TrEMBL
PhenoGen 4933427D06Rik PhenoGen
RNAcentral URS0000A764C2 RNACentral
  URS0000A7679E RNACentral
  URS0000A77509 RNACentral
UniProt Q4KMM7_MOUSE UniProtKB/TrEMBL
  Q8CDD1_MOUSE UniProtKB/TrEMBL