9930111J21Rik1 (RIKEN cDNA 9930111J21 gene 1) - Rat Genome Database

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Gene: 9930111J21Rik1 (RIKEN cDNA 9930111J21 gene 1) Mus musculus
Analyze
No known orthologs.
Symbol: 9930111J21Rik1
Name: RIKEN cDNA 9930111J21 gene 1
RGD ID: 1617304
MGI Page MGI
Description: Predicted to enable GTPase activity. Predicted to be involved in cellular response to interferon-beta and defense response. Predicted to be active in endoplasmic reticulum membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9930111J21Rik; Iigp; interferon-inducible GTPase family member; Irgb5; RP23-54N20.1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391148,836,977 - 48,870,208 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1148,836,977 - 48,870,225 (-)EnsemblGRCm39 Ensembl
GRCm381148,946,150 - 48,979,381 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1148,946,150 - 48,979,398 (-)EnsemblGRCm38mm10GRCm38
MGSCv371148,759,652 - 48,792,883 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361148,786,431 - 48,822,804 (-)NCBIMGSCv36mm8
Cytogenetic Map11B1.2NCBI
cM Map1128.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  


Genomics

Variants

.
Variants in 9930111J21Rik1
43 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:627
Count of miRNA genes:426
Interacting mature miRNAs:468
Transcripts:ENSMUST00000093153, ENSMUST00000097494, ENSMUST00000141200
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
13452402Hipmt3_mhippocampal morphometry trait 3 (mouse)114797732550277325Mouse

Markers in Region
RH129915  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381455,587,466 - 55,588,058UniSTSGRCm38
GRCm381148,945,380 - 48,945,585UniSTSGRCm38
MGSCv371456,206,303 - 56,206,895UniSTSGRCm37
MGSCv371148,758,882 - 48,759,087UniSTSGRCm37
Celera1453,392,526 - 53,393,118UniSTS
Cytogenetic Map14C2-D1UniSTS
Cytogenetic Map11B1.2UniSTS
RH124942  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381148,945,524 - 48,945,860UniSTSGRCm38
MGSCv371148,759,026 - 48,759,362UniSTSGRCm37
Cytogenetic Map14C2-D1UniSTS
Cytogenetic Map11B1.2UniSTS
MARC_4677-4678:996679594:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381455,588,475 - 55,589,335UniSTSGRCm38
GRCm381148,945,721 - 48,945,793UniSTSGRCm38
MGSCv371456,207,312 - 56,208,172UniSTSGRCm37
MGSCv371148,759,223 - 48,759,295UniSTSGRCm37
Celera1453,393,535 - 53,394,395UniSTS
Cytogenetic Map14C2-D1UniSTS
Cytogenetic Map11B1.2UniSTS
RH71322  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381148,945,405 - 48,945,575UniSTSGRCm38
MGSCv371148,758,907 - 48,759,077UniSTSGRCm37
Cytogenetic Map14C2-D1UniSTS
Cytogenetic Map11B1.2UniSTS
Psme2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.2UniSTS
Cytogenetic Map14C2-D1UniSTS
Cytogenetic Map13B3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001114679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL627237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000093153   ⟹   ENSMUSP00000090840
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,856,644 - 48,870,225 (-)Ensembl
GRCm38.p6 Ensembl1148,965,817 - 48,979,398 (-)Ensembl
RefSeq Acc Id: ENSMUST00000097494   ⟹   ENSMUSP00000095102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,836,977 - 48,870,208 (-)Ensembl
GRCm38.p6 Ensembl1148,946,150 - 48,979,381 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141200   ⟹   ENSMUSP00000121432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,858,405 - 48,870,105 (-)Ensembl
GRCm38.p6 Ensembl1148,967,578 - 48,979,278 (-)Ensembl
RefSeq Acc Id: NM_001114679   ⟹   NP_001108151
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,836,977 - 48,870,208 (-)NCBI
GRCm381148,946,150 - 48,979,381 (-)ENTREZGENE
MGSCv371148,759,652 - 48,792,883 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001108151 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000095102
  ENSMUSP00000095102.3
  ENSMUSP00000120450.2
  ENSMUSP00000121432.2
RefSeq Acc Id: NP_001108151   ⟸   NM_001114679
- UniProtKB: Q5SVP0 (UniProtKB/TrEMBL),   A0A1G5SJV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000090840   ⟸   ENSMUST00000093153
RefSeq Acc Id: ENSMUSP00000095102   ⟸   ENSMUST00000097494
RefSeq Acc Id: ENSMUSP00000121432   ⟸   ENSMUST00000141200
Protein Domains
IRG-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SVP0-F1-model_v2 AlphaFold Q5SVP0 1-844 view protein structure

Promoters
RGD ID:8674450
Promoter ID:EPDNEW_M15256
Type:initiation region
Name:9930111J21Rik1_1
Description:Mus musculus RIKEN cDNA 9930111J21 gene 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381148,979,377 - 48,979,437EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3041173 AgrOrtholog
Ensembl Genes ENSMUSG00000069892 UniProtKB/TrEMBL
  ENSMUSG00000069893 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000097494 ENTREZGENE
  ENSMUST00000097494.9 UniProtKB/TrEMBL
  ENSMUST00000132768.2 UniProtKB/TrEMBL
  ENSMUST00000141200.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro G_IRG_dom UniProtKB/TrEMBL
  Interferon-induced_GTPase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report mmu:667214 UniProtKB/TrEMBL
MGD MGI:3041173 ENTREZGENE
NCBI Gene 667214 ENTREZGENE
PANTHER INTERFERON-INDUCIBLE GTPASE UniProtKB/TrEMBL
  RIKEN CDNA 9930111J21 GENE 1-RELATED UniProtKB/TrEMBL
Pfam IIGP UniProtKB/TrEMBL
PhenoGen 9930111J21Rik1 PhenoGen
PROSITE G_IRG UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A1G5SJV1 ENTREZGENE
  Q5SVN9_MOUSE UniProtKB/TrEMBL
  Q5SVP0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 9930111J21Rik1  RIKEN cDNA 9930111J21 gene 1  9930111J21Rik  RIKEN cDNA 9930111J21 gene  Symbol and/or name change 5135510 APPROVED