Smim31 (small integral membrane protein 31)

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Gene: Smim31 (small integral membrane protein 31) Mus musculus

Analyze

Symbol:

Smim31

Name:

small integral membrane protein 31

RGD ID:

1617177

MGI Page

MGI

Description:

Localizes to axon. Orthologous to human SMIM31 (small integral membrane protein 31); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); aflatoxin B2 (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

BC030870; cDNA sequence BC030870; uncharacterized protein LOC407795

RGD Orthologs

Human

Rat

Bonobo

Dog

Pig

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	65,538,265 - 65,582,215 (-)	NCBI	GRCm39		mm39
GRCm38	8	65,085,613 - 65,129,563 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	65,085,613 - 65,129,563 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	67,609,512 - 67,653,436 (-)	NCBI	GRCm37		mm9	NCBIm37
Celera	8	67,651,143 - 67,698,704 (-)	NCBI		Celera
Cytogenetic Map	8	B3.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B2 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

axon (IDA)

integral component of membrane (IEA)

membrane (IEA)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:24316575	PMID:25631124

Genomics

Comparative Map Data

Smim31
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	65,538,265 - 65,582,215 (-)	NCBI	GRCm39		mm39
GRCm38	8	65,085,613 - 65,129,563 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	65,085,613 - 65,129,563 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	67,609,512 - 67,653,436 (-)	NCBI	GRCm37		mm9	NCBIm37
Celera	8	67,651,143 - 67,698,704 (-)	NCBI		Celera
Cytogenetic Map	8	B3.1	NCBI

SMIM31
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	164,754,064 - 164,803,795 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	164,754,131 - 164,803,795 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	165,675,283 - 165,724,947 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	4	q32.3	NCBI
HuRef	4	161,429,315 - 161,478,568 (+)	NCBI		HuRef
CHM1_1	4	165,651,706 - 165,701,580 (+)	NCBI		CHM1_1

Smim31
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	26,483,411 - 26,519,137 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	26,483,463 - 26,519,092 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	26,367,177 - 26,402,667 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	16	24,687,436 - 24,726,660 (+)	NCBI		Celera
Cytogenetic Map	16	p13	NCBI

SMIM31
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	169,055,456 - 169,104,218 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	169,055,495 - 169,102,915 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	157,002,899 - 157,050,319 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SMIM31
(Canis lupus familiaris - dog)

No map positions available.

LOC100519499
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	53,576,922 - 53,637,159 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	53,576,927 - 53,637,383 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	56,962,749 - 57,023,302 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Position Markers

G06574

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	65,093,124 - 65,093,462	UniSTS	GRCm38
MGSCv37	8	67,617,023 - 67,617,361	UniSTS	GRCm37
Celera	8	67,658,804 - 67,659,142	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558870	Eae36_m	experimental allergic encephalomyelitis susceptibility 36 (mouse)			Not determined		8	14723160	71045600	Mouse
1357811	Orq3_m	ovulation rate QTL 3 (mouse)			Not determined		8	32016544	71287993	Mouse
4141437	W10q14_m	weight 10 weeks QTL 14 (mouse)			Not determined			32016544	71287993	Mouse
4141172	W6q9_m	weight 6 weeks QTL 9 (mouse)			Not determined			32016544	71287993	Mouse
4140966	Egq12_m	early growth QTL 12 (mouse)			Not determined			32016544	71287993	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1301936	Trigq2_m	triglyceride QTL 2 (mouse)			Not determined		8	33837362	67837502	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	103
Count of miRNA genes:	101
Interacting mature miRNAs:	101
Transcripts:	ENSMUST00000098713
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001352886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC102287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK018670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK131860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK136454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC030870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000098713 ⟹ ENSMUSP00000147515

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	65,085,613 - 65,129,563 (-)	Ensembl

RefSeq Acc Id:

NM_001352886 ⟹ NP_001339815

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	65,538,265 - 65,582,215 (-)	NCBI
GRCm38	8	65,085,613 - 65,129,563 (-)	NCBI

Sequence:

show sequence

GGTAGAAAGAGCAAACATCTGAATGTTCATACCACTTCCTGGTTCCTTGTCGATCCTTCACAAG
GAAATGAGTTTTTAATTTATTTATTCTTTGCCTTGAGAGTACAGATTCACCTTGAGGGAGTCCT
GCTTCAAAGCCGGCAAGATTAGTGAGCTTAGGACGGTGAACTAGCACCGTGAAGTCAGCATTTG
CAGGACCTGGAAGAGAGCAAAAGAGAATGCTTACTAACTGCGCAACCTAGTCCTGACCCAACAC
GAGAAAGACTGTCTAACCAGCCTCACGGGCTCCGTCCTGGCTTCTCTCGGGAGAGGAATGTTTC
TGGTGAAAACACCGTTAGTCTTCCATGGAGCTACCATTCACCAACTTGGAGGTGGCGTTCATTT
TACTGGCTTTCTTCATCTTTTCCTTGTTTACTCTGGCTTCCATCTACACCAGCCCTAATGAGAG
GAATGAAGACGATGACTTCCACCTAAAGGAAAAGAGAAGGAAAAGAAAAGAGTTTAAAGGGAAG
AAAAATTGCTCAGATGAAGAACACAAAATTGAAACAATGCAACCATGACCTCAGCCACCTGTGA
GTGCACAGTCGCTCCCCTAAGAATGCCTGCTGGGATTGCTCGCAAGACCAAGGACATTAAAACA
GCCTTCAGATCATAATCGCTAGGACTCAACACAGGGAATGGGGCTTCATACTCTTTTTTTGACA
TCCTTGTTTATAAGACCAATTATGAGCACTAGCTGTAATAAAAAGGAATACAGTCAAAGTAAGA
TCTTTCAAGAAAGAGAAAATACATAAGTATTATAATCTAGTTAAAGAAAACAGCAGTCTCTGGG
ACTGTGGCTCAGTGGTAGAGTGCTTGCCTAACATGCTTAAGGCTCTGTGTTTGATTGCTAGCTC
TGACAAAAAAAAGGGAGGTAGATAAATAAATAAATAAATAAATAAATAAGGTGCTGGTGAGATG
GCTCAGTGGTTAAGAGCACCTACTGTTCCTCCAGAGGTCCTGAGTTCAATTCCTAACAACCACA
CGGTGGCTCACAACCATCTATAAAGGGATCTGATGCCCTCTTCTGGCATACAGCTGTACACACA
GAGCACTTATTCATTTAAAATTAATGAATAAATGAGTGAATGAATGAATGAATGAATGTACAAT
GACATTTTAAAATCACATACATATGTATGTATCCATACGTAAATATGTTCACATGAGTGCAGAT
GCCCACAAAGGCCAGAGGAGGGCACCAGACCCTCAGAGCCACAGAGGGCTGAGTCACCAGGATT
TTGACAACTGAACTCAGGTCCTCTGCAACAGCAAACGCCCTTAACTACTGAGCCACTGCTCCAG
CTCCAAGAACAATGCATTTTTACTGTTTTTCTTTCACTTGGTTATGCAAAGTGTGACTTAGAAG
CTACAATTCTTCTGTTGTAAAACTACAACTAACCATGTCTCTGCTGCTTCTATAATAAGGACTT
AATAAGGACTTCTGAAATAAATACTAAAGACAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001339815	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAE20432	(Get FASTA)	NCBI Sequence Viewer
	BAE20834	(Get FASTA)	NCBI Sequence Viewer
	BAE22984	(Get FASTA)	NCBI Sequence Viewer
	Q3V2G4	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001339815 ⟸ NM_001352886

RefSeq Acc Id:

ENSMUSP00000147515 ⟸ ENSMUST00000098713

Promoters

RGD ID:

8667177

Promoter ID:

EPDNEW_M11620

Type:

initiation region

Name:

BC030870_1

Description:

Mus musculus cDNA sequence BC030870 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	65,129,565 - 65,129,625	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:3039572	AgrOrtholog
Ensembl Genes	ENSMUSG00000074300	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000147515	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000098713	ENTREZGENE, UniProtKB/Swiss-Prot
MGD	MGI:3039572	ENTREZGENE
NCBI Gene	407795	ENTREZGENE
PhenoGen	Smim31	PhenoGen
UniGene	Mm.387876	ENTREZGENE
UniProt	Q3V2G4	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-09	Smim31	small integral membrane protein 31	BC030870	cDNA sequence BC030870	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)