Smim31 (small integral membrane protein 31) - Rat Genome Database
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Gene: Smim31 (small integral membrane protein 31) Mus musculus
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Symbol: Smim31
Name: small integral membrane protein 31
RGD ID: 1617177
MGI Page MGI
Description: Localizes to axon. Orthologous to human SMIM31 (small integral membrane protein 31); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); aflatoxin B2 (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BC030870; cDNA sequence BC030870; uncharacterized protein LOC407795
RGD Orthologs
Human
Rat
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39865,538,265 - 65,582,215 (-)NCBIGRCm39mm39
GRCm38865,085,613 - 65,129,563 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl865,085,613 - 65,129,563 (-)EnsemblGRCm38mm10GRCm38
MGSCv37867,609,512 - 67,653,436 (-)NCBIGRCm37mm9NCBIm37
Celera867,651,143 - 67,698,704 (-)NCBICelera
Cytogenetic Map8B3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:24316575   PMID:25631124  


Genomics

Comparative Map Data
Smim31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39865,538,265 - 65,582,215 (-)NCBIGRCm39mm39
GRCm38865,085,613 - 65,129,563 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl865,085,613 - 65,129,563 (-)EnsemblGRCm38mm10GRCm38
MGSCv37867,609,512 - 67,653,436 (-)NCBIGRCm37mm9NCBIm37
Celera867,651,143 - 67,698,704 (-)NCBICelera
Cytogenetic Map8B3.1NCBI
SMIM31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4164,754,064 - 164,803,795 (+)EnsemblGRCh38hg38GRCh38
GRCh384164,754,131 - 164,803,795 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374165,675,283 - 165,724,947 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4q32.3NCBI
HuRef4161,429,315 - 161,478,568 (+)NCBIHuRef
CHM1_14165,651,706 - 165,701,580 (+)NCBICHM1_1
Smim31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01626,483,411 - 26,519,137 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1626,483,463 - 26,519,092 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01626,367,177 - 26,402,667 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1624,687,436 - 24,726,660 (+)NCBICelera
Cytogenetic Map16p13NCBI
SMIM31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14169,055,456 - 169,104,218 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4169,055,495 - 169,102,915 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04157,002,899 - 157,050,319 (+)NCBIMhudiblu_PPA_v0panPan3
SMIM31
(Canis lupus familiaris - dog)
No map positions available.
LOC100519499
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl853,576,922 - 53,637,159 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1853,576,927 - 53,637,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2856,962,749 - 57,023,302 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Position Markers
G06574  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38865,093,124 - 65,093,462UniSTSGRCm38
MGSCv37867,617,023 - 67,617,361UniSTSGRCm37
Celera867,658,804 - 67,659,142UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83383736267837502Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:101
Interacting mature miRNAs:101
Transcripts:ENSMUST00000098713
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000098713   ⟹   ENSMUSP00000147515
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl865,085,613 - 65,129,563 (-)Ensembl
RefSeq Acc Id: NM_001352886   ⟹   NP_001339815
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39865,538,265 - 65,582,215 (-)NCBI
GRCm38865,085,613 - 65,129,563 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001339815 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE20432 (Get FASTA)   NCBI Sequence Viewer  
  BAE20834 (Get FASTA)   NCBI Sequence Viewer  
  BAE22984 (Get FASTA)   NCBI Sequence Viewer  
  Q3V2G4 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001339815   ⟸   NM_001352886
RefSeq Acc Id: ENSMUSP00000147515   ⟸   ENSMUST00000098713

Promoters
RGD ID:8667177
Promoter ID:EPDNEW_M11620
Type:initiation region
Name:BC030870_1
Description:Mus musculus cDNA sequence BC030870 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38865,129,565 - 65,129,625EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3039572 AgrOrtholog
Ensembl Genes ENSMUSG00000074300 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000147515 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000098713 ENTREZGENE, UniProtKB/Swiss-Prot
MGD MGI:3039572 ENTREZGENE
NCBI Gene 407795 ENTREZGENE
PhenoGen Smim31 PhenoGen
UniGene Mm.387876 ENTREZGENE
UniProt Q3V2G4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-09 Smim31  small integral membrane protein 31  BC030870  cDNA sequence BC030870  Symbol and/or name change 5135510 APPROVED