Gnptab (N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Gnptab (N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits) Mus musculus
Analyze
Symbol: Gnptab
Name: N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
RGD ID: 1617164
MGI Page MGI
Description: Predicted to enable UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity. Acts upstream of or within carbohydrate phosphorylation; establishment of localization in cell; and secretion of lysosomal enzymes. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Used to study mucolipidosis II alpha/beta. Human ortholog(s) of this gene implicated in mucolipidosis II alpha/beta and mucolipidosis III alpha/beta. Orthologous to human GNPTAB (N-acetylglucosamine-1-phosphate transferase subunits alpha and beta).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG432486; glcNAc-1-phosphotransferase subunits alpha/beta; KIAA1208; MGC79224; mKIAA1208; N-acetylglucosamine-1-phosphotransferase subunits alpha/beta; stealth protein GNPTAB; UDP-N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm19190  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,215,130 - 88,283,186 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,214,994 - 88,283,191 (+)EnsemblGRCm39 Ensembl
GRCm381088,379,134 - 88,447,324 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,379,132 - 88,447,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv371087,842,157 - 87,910,074 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361087,809,211 - 87,877,128 (+)NCBIMGSCv36mm8
Celera1090,357,134 - 90,427,086 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IBA,ISO,ISS)
Golgi membrane  (ISO,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood vessel morphology  (IEA)
abnormal bulbourethral gland morphology  (IAGP)
abnormal cell morphology  (IAGP)
abnormal cerebellar cortex morphology  (IAGP)
abnormal cerebellar molecular layer  (IAGP)
abnormal cerebellum white matter morphology  (IAGP)
abnormal chondrocyte morphology  (IAGP)
abnormal circulating enzyme level  (IAGP)
abnormal cognition  (IAGP)
abnormal compact bone morphology  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal epiphyseal plate morphology  (IAGP)
abnormal exocrine gland morphology  (IAGP)
abnormal exocrine pancreas morphology  (IAGP)
abnormal eye electrophysiology  (IAGP)
abnormal facial morphology  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal gait  (IAGP)
abnormal heart morphology  (IEA)
abnormal hippocampus CA1 region morphology  (IAGP)
abnormal hippocampus CA3 region morphology  (IAGP)
abnormal kidney morphology  (IEA)
abnormal lateral nasal gland morphology  (IAGP)
abnormal long bone diaphysis morphology  (IAGP)
abnormal lymph node morphology  (IEA)
abnormal lysosome morphology  (IAGP)
abnormal lysosome physiology  (IAGP)
abnormal osteoblast morphology  (IAGP)
abnormal osteoclast physiology  (IAGP)
abnormal osteocyte morphology  (IAGP)
abnormal ovary morphology  (IEA)
abnormal pancreas morphology  (IAGP)
abnormal pancreatic acinar cell morphology  (IAGP)
abnormal pancreatic acinar cell zymogen granule morphology  (IAGP)
abnormal parotid gland acinus morphology  (IAGP)
abnormal placenta morphology  (IEA)
abnormal placenta size  (IEA)
abnormal placenta vasculature  (IEA)
abnormal retina photoreceptor layer morphology  (IAGP)
abnormal salivary gland morphology  (IAGP)
abnormal skeleton development  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal skin morphology  (IEA)
abnormal skin turgor  (IAGP)
abnormal spine curvature  (IAGP)
abnormal spleen morphology  (IEA)
abnormal stomach morphology  (IEA)
abnormal submandibular gland morphology  (IAGP)
abnormal uterus morphology  (IEA)
abnormal vitreous body morphology  (IEA)
astrocytosis  (IAGP)
ataxia  (IAGP)
axonal spheroids  (IAGP)
brain atrophy  (IAGP)
brain inflammation  (IAGP)
cataract  (IEA)
cerebellum atrophy  (IAGP)
coarse facial features  (IAGP)
decreased body length  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mass  (IAGP)
decreased bone mineral content  (IAGP)
decreased bone mineral density  (IAGP)
decreased brain size  (IAGP)
decreased lean body mass  (IAGP)
decreased osteoblast cell number  (IAGP)
decreased survivor rate  (IAGP)
decreased trabecular bone volume  (IAGP)
demyelination  (IAGP)
enlarged heart  (IEA)
enlarged kidney  (IEA)
enlarged lymph nodes  (IEA)
enlarged ovary  (IEA)
enlarged spleen  (IEA)
flattened snout  (IAGP)
impaired coordination  (IAGP)
impaired osteoblast differentiation  (IAGP)
increased bone resorption  (IAGP)
increased circulating type I collagen C-terminal telopeptide level  (IAGP)
increased interleukin-6 secretion  (IAGP)
increased lysosomal enzyme secretion  (IAGP)
increased osteoclast cell number  (IAGP)
kyphosis  (IAGP)
limb grasping  (IAGP)
lysosomal protein accumulation  (IAGP)
no abnormal phenotype detected  (IAGP)
no spontaneous movement  (IEA)
osteoporosis  (IAGP)
penis prolapse  (IAGP)
postnatal growth retardation  (IAGP)
premature death  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
progressive muscle weakness  (IAGP)
Purkinje cell axonal dystrophy  (IAGP)
Purkinje cell degeneration  (IAGP)
retina degeneration  (IAGP)
retina photoreceptor degeneration  (IAGP)
short vertebral column  (IAGP)
small kidney  (IEA)
small nasal bridge  (IAGP)
small stomach  (IEA)
thick eyelids  (IAGP)
thick skin  (IAGP)
urinary bladder obstruction  (IEA)
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8001130   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15368895  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16299590   PMID:17652091   PMID:17962477   PMID:19261645   PMID:19710420   PMID:19955174   PMID:20472886   PMID:21267068   PMID:21325625  
PMID:21677750   PMID:21719679   PMID:21792934   PMID:21873635   PMID:22961545   PMID:23733939   PMID:24127423   PMID:25107912   PMID:25314316   PMID:25601403   PMID:26273529   PMID:26857995  
PMID:27151663   PMID:27239697   PMID:28101008   PMID:29467218   PMID:31405983   PMID:32290105   PMID:32325033   PMID:32554809   PMID:33023972   PMID:33574442   PMID:34128834   PMID:38355793  


Genomics

Comparative Map Data
Gnptab
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,215,130 - 88,283,186 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,214,994 - 88,283,191 (+)EnsemblGRCm39 Ensembl
GRCm381088,379,134 - 88,447,324 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,379,132 - 88,447,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv371087,842,157 - 87,910,074 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361087,809,211 - 87,877,128 (+)NCBIMGSCv36mm8
Celera1090,357,134 - 90,427,086 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.86NCBI
GNPTAB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,745,499 - 101,830,959 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12101,745,499 - 101,830,959 (-)EnsemblGRCh38hg38GRCh38
GRCh3712102,139,277 - 102,224,737 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,663,408 - 100,748,763 (-)NCBINCBI36Build 36hg18NCBI36
Celera12101,803,304 - 101,888,673 (-)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1299,198,884 - 99,284,601 (-)NCBIHuRef
CHM1_112102,105,957 - 102,191,339 (-)NCBICHM1_1
T2T-CHM13v2.012101,706,726 - 101,792,185 (-)NCBIT2T-CHM13v2.0
Gnptab
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,687,923 - 24,754,821 (+)NCBIGRCr8
mRatBN7.2722,800,502 - 22,866,336 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,800,485 - 22,866,933 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0728,956,363 - 29,023,232 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl728,956,512 - 29,022,868 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0729,063,329 - 29,130,166 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4725,084,137 - 25,149,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera719,960,704 - 20,027,442 (+)NCBICelera
Cytogenetic Map7q13NCBI
Gnptab
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,107,542 - 37,136,993 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540537,107,902 - 37,136,993 (-)NCBIChiLan1.0ChiLan1.0
GNPTAB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210109,813,251 - 109,904,003 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112109,809,649 - 109,900,400 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01299,328,026 - 99,418,151 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112102,727,949 - 102,816,560 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,729,615 - 102,816,560 (-)Ensemblpanpan1.1panPan2
GNPTAB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,659,108 - 40,724,498 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,631,279 - 40,704,365 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1541,027,451 - 41,092,978 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01541,313,158 - 41,378,930 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1541,285,330 - 41,379,054 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,567,331 - 40,640,075 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,676,876 - 40,742,356 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01540,950,892 - 41,016,624 (-)NCBIUU_Cfam_GSD_1.0
Gnptab
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,223,523 - 19,299,600 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649212,233,992 - 12,308,690 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649212,233,943 - 12,310,014 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNPTAB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,361,872 - 82,460,814 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,264,640 - 82,460,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,352,843 - 86,413,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GNPTAB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,998,671 - 97,084,333 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1196,999,646 - 97,084,225 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037147,919,739 - 148,005,708 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnptab
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,315,908 - 6,343,820 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247506,315,949 - 6,344,919 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gnptab
2376 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4256
Count of miRNA genes:946
Interacting mature miRNAs:1352
Transcripts:ENSMUST00000020251, ENSMUST00000127615, ENSMUST00000130301, ENSMUST00000132738, ENSMUST00000141343, ENSMUST00000151273, ENSMUST00000155306
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
12910789Pwgrq19_mpost-weaning growth rate QTL 19 (mouse)108282870092169056Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1357831Igf1sl2_mIGF-1 serum levels 2 (mouse)Not determined108769412799936278Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
4141382Ssrq4_mstress response QTL 4 (mouse)Not determined8249093890856102Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
13524528Bodwtq9_mbody wweight QTL 9 (mouse)108764311793193117Mouse

Markers in Region
D3S1687  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381088,379,414 - 88,379,545UniSTSGRCm38
MGSCv371087,842,159 - 87,842,290UniSTSGRCm37
Celera1090,357,136 - 90,357,267UniSTS
Cytogenetic Map10C1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC005501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ174150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L36434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000020251   ⟹   ENSMUSP00000020251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1088,215,088 - 88,283,191 (+)Ensembl
GRCm38.p6 Ensembl1088,379,226 - 88,447,329 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127615   ⟹   ENSMUSP00000116915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1088,214,994 - 88,250,460 (+)Ensembl
GRCm38.p6 Ensembl1088,379,132 - 88,414,598 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130301   ⟹   ENSMUSP00000120643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1088,215,086 - 88,250,417 (+)Ensembl
GRCm38.p6 Ensembl1088,379,224 - 88,414,555 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132738
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1088,265,428 - 88,269,150 (+)Ensembl
GRCm38.p6 Ensembl1088,429,566 - 88,433,288 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141343
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1088,269,223 - 88,276,724 (+)Ensembl
GRCm38.p6 Ensembl1088,433,361 - 88,440,862 (+)Ensembl
Ensembl Acc Id: ENSMUST00000151273   ⟹   ENSMUSP00000118025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1088,215,086 - 88,283,182 (+)Ensembl
GRCm38.p6 Ensembl1088,379,224 - 88,447,320 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1088,271,906 - 88,272,591 (+)Ensembl
GRCm38.p6 Ensembl1088,436,044 - 88,436,729 (+)Ensembl
RefSeq Acc Id: NM_001004164   ⟹   NP_001004164
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391088,215,130 - 88,283,186 (+)NCBI
GRCm381088,379,268 - 88,447,324 (+)NCBI
MGSCv371087,842,157 - 87,910,074 (+)RGD
Celera1090,357,134 - 90,427,086 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001364707   ⟹   NP_001351636
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391088,215,130 - 88,283,186 (+)NCBI
GRCm381088,379,268 - 88,447,324 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001421317   ⟹   NP_001408246
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391088,215,130 - 88,283,186 (+)NCBI
RefSeq Acc Id: NM_001421318   ⟹   NP_001408247
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391088,215,130 - 88,283,186 (+)NCBI
RefSeq Acc Id: NM_001421319   ⟹   NP_001408248
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391088,215,130 - 88,283,186 (+)NCBI
RefSeq Acc Id: XM_006513849   ⟹   XP_006513912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391088,250,255 - 88,283,186 (+)NCBI
GRCm381088,414,393 - 88,447,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314026   ⟹   XP_017169515
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391088,250,255 - 88,283,186 (+)NCBI
GRCm381088,414,393 - 88,447,324 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001004164   ⟸   NM_001004164
- Peptide Label: isoform 1
- UniProtKB: Q3U3K6 (UniProtKB/Swiss-Prot),   Q3US34 (UniProtKB/Swiss-Prot),   Q69ZN6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513912   ⟸   XM_006513849
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169515   ⟸   XM_017314026
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001351636   ⟸   NM_001364707
- Peptide Label: isoform 2
Ensembl Acc Id: ENSMUSP00000120643   ⟸   ENSMUST00000130301
Ensembl Acc Id: ENSMUSP00000116915   ⟸   ENSMUST00000127615
Ensembl Acc Id: ENSMUSP00000020251   ⟸   ENSMUST00000020251
Ensembl Acc Id: ENSMUSP00000118025   ⟸   ENSMUST00000151273
RefSeq Acc Id: NP_001408247   ⟸   NM_001421318
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001408248   ⟸   NM_001421319
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001408246   ⟸   NM_001421317
- Peptide Label: isoform 3
Protein Domains
DMAP1-binding   EF-hand   LNR   Stealth protein CR1 conserved region

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q69ZN6-F1-model_v2 AlphaFold Q69ZN6 1-1235 view protein structure

Promoters
RGD ID:6819436
Promoter ID:MM_KWN:5278
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000092244,   OTTMUST00000079166,   OTTMUST00000079167,   OTTMUST00000079204,   OTTMUST00000079206,   OTTMUST00000079207,   OTTMUST00000079212,   UC007GRK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361087,841,896 - 87,842,396 (+)MPROMDB
RGD ID:6819392
Promoter ID:MM_KWN:5280
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000079209
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361087,892,136 - 87,892,636 (+)MPROMDB
RGD ID:8672986
Promoter ID:EPDNEW_M14523
Type:multiple initiation site
Name:Gnptab_1
Description:Mus musculus N-acetylglucosamine-1-phosphate transferase, alphaand beta subunits , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381088,379,364 - 88,379,424EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3643902 AgrOrtholog
Ensembl Genes ENSMUSG00000035311 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020251 ENTREZGENE
  ENSMUST00000020251.10 UniProtKB/Swiss-Prot
  ENSMUST00000127615.8 UniProtKB/TrEMBL
  ENSMUST00000130301.8 UniProtKB/TrEMBL
  ENSMUST00000151273.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.300.320 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DMAP1-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GNPTAB_reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Notch-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Notch_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stealth UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stealth_CR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stealth_CR2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stealth_CR3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stealth_CR4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:432486 UniProtKB/Swiss-Prot
MGD MGI:3643902 ENTREZGENE
NCBI Gene 432486 ENTREZGENE
PANTHER N-ACETYLGLUCOSAMINE-1-PHOSPHOTRANSFERASE SUBUNITS ALPHA/BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24045 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DMAP_binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GlcNAc-1_reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Notch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stealth_CR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stealth_CR2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stealth_CR3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Stealth_CR4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gnptab PhenoGen
PROSITE DMAP1_BIND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LNR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DMAP_binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF90193 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YXC6_MOUSE UniProtKB/TrEMBL
  D3Z1C3_MOUSE UniProtKB/TrEMBL
  D6RJ30_MOUSE UniProtKB/TrEMBL
  GNPTA_MOUSE UniProtKB/Swiss-Prot
  Q3U3K6 ENTREZGENE
  Q3US34 ENTREZGENE
  Q61340_MOUSE UniProtKB/TrEMBL
  Q69ZN6 ENTREZGENE
  Q6P9R5_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3U3K6 UniProtKB/Swiss-Prot
  Q3US34 UniProtKB/Swiss-Prot