Ankrd34a (ankyrin repeat domain 34A) - Rat Genome Database

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Gene: Ankrd34a (ankyrin repeat domain 34A) Mus musculus
Analyze
Symbol: Ankrd34a
Name: ankyrin repeat domain 34A
RGD ID: 1617128
MGI Page MGI
Description: Is expressed in cerebral cortex subventricular zone; cerebral cortex ventricular layer; and cortical plate. Orthologous to human ANKRD34A (ankyrin repeat domain 34A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ankr; Ankrd34; ankyrin repeat domain 34; ankyrin repeat domain-containing protein 34A; AW060394; expressed sequence AW060394
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,503,599 - 96,507,442 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,503,952 - 96,507,091 (+)EnsemblGRCm39 Ensembl
GRCm38396,595,928 - 96,600,126 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,596,636 - 96,599,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv37396,400,559 - 96,403,701 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,682,062 - 96,685,180 (+)NCBIMGSCv36mm8
Celera398,004,592 - 98,006,805 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12466851   PMID:12477932   PMID:21267068   PMID:21677750   PMID:34321999  


Genomics

Comparative Map Data
Ankrd34a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,503,599 - 96,507,442 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,503,952 - 96,507,091 (+)EnsemblGRCm39 Ensembl
GRCm38396,595,928 - 96,600,126 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,596,636 - 96,599,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv37396,400,559 - 96,403,701 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,682,062 - 96,685,180 (+)NCBIMGSCv36mm8
Celera398,004,592 - 98,006,805 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.93NCBI
ANKRD34A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,959,441 - 145,964,575 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,959,441 - 145,964,575 (-)EnsemblGRCh38hg38GRCh38
GRCh371145,470,515 - 145,475,647 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,181,865 - 144,187,004 (+)NCBINCBI36Build 36hg18NCBI36
Build 341142,959,551 - 142,964,691NCBI
Celera1119,673,860 - 119,679,002 (+)NCBICelera
Cytogenetic Map1q21.1NCBI
HuRef1119,434,352 - 119,439,409 (+)NCBIHuRef
CHM1_11147,327,567 - 147,332,708 (-)NCBICHM1_1
T2T-CHM13v2.01145,076,256 - 145,081,392 (-)NCBIT2T-CHM13v2.0
Ankrd34a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,818,496 - 186,823,921 (+)NCBIGRCr8
mRatBN7.22184,129,830 - 184,135,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,129,238 - 184,135,116 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,803,275 - 191,806,702 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,596,043 - 189,599,472 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,435,832 - 184,439,259 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,720,277 - 198,725,155 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,721,724 - 198,725,154 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02218,208,084 - 218,212,089 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,395,509 - 191,398,939 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,362,655 - 191,389,254 (+)NCBI
Celera2176,656,866 - 176,660,296 (+)NCBICelera
Cytogenetic Map2q34NCBI
Ankrd34a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955568131,259 - 134,841 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955568130,062 - 134,841 (+)NCBIChiLan1.0ChiLan1.0
ANKRD34A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21103,353,755 - 103,356,875 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,942,134 - 102,947,311 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01121,793,315 - 121,798,456 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,871,395 - 113,874,584 (-)NCBIpanpan1.1PanPan1.1panPan2
ANKRD34A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11758,749,788 - 58,771,464 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1758,750,678 - 58,752,234 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,217,749 - 58,239,566 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01759,746,459 - 59,768,263 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1759,746,459 - 59,750,249 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11758,619,295 - 58,641,094 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01758,680,421 - 58,702,235 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01759,406,863 - 59,428,688 (-)NCBIUU_Cfam_GSD_1.0
Ankrd34a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505820,817,680 - 20,822,654 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936867693,800 - 696,826 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936867693,797 - 696,820 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD34A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,378,714 - 99,382,810 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,377,555 - 99,382,322 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24109,021,481 - 109,025,124 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD34A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,786,058 - 12,789,260 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2012,786,933 - 12,788,423 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603815,464,564 - 15,468,144 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd34a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,314,813 - 17,320,009 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477217,315,076 - 17,330,487 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ankrd34a
88 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:358
Count of miRNA genes:257
Interacting mature miRNAs:293
Transcripts:ENSMUST00000058943
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse

Markers in Region
AW060394  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,599,521 - 96,599,601UniSTSGRCm38
MGSCv37396,403,444 - 96,403,524UniSTSGRCm37
Celera398,006,548 - 98,006,628UniSTS
Cytogenetic Map3F2.1UniSTS
Whitehead/MRC_RH31099.76UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000058943   ⟹   ENSMUSP00000102707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,503,952 - 96,507,091 (+)Ensembl
GRCm38.p6 Ensembl396,596,636 - 96,599,775 (+)Ensembl
RefSeq Acc Id: NM_001024851   ⟹   NP_001020022
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,503,918 - 96,507,442 (+)NCBI
GRCm38396,596,636 - 96,599,778 (+)NCBI
MGSCv37396,400,559 - 96,403,701 (+)RGD
Celera398,004,592 - 98,006,805 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001411495   ⟹   NP_001398424
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,503,599 - 96,507,442 (+)NCBI
RefSeq Acc Id: XM_006501711   ⟹   XP_006501774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,504,211 - 96,507,442 (+)NCBI
GRCm38396,596,895 - 96,600,126 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001020022   ⟸   NM_001024851
- UniProtKB: B2RW11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501774   ⟸   XM_006501711
- Peptide Label: isoform X1
- UniProtKB: B2RW11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000102707   ⟸   ENSMUST00000058943
RefSeq Acc Id: NP_001398424   ⟸   NM_001411495
- UniProtKB: B2RW11 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RW11-F1-model_v2 AlphaFold B2RW11 1-495 view protein structure

Promoters
RGD ID:6833431
Promoter ID:MM_KWN:35401
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_001024851
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36396,400,146 - 96,400,646 (+)MPROMDB
RGD ID:6848765
Promoter ID:MM_TRO:6344
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B4
Transcripts:MTR062775.3.1573.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36396,401,446 - 96,402,087 (+)MPROMDB
RGD ID:6881688
Promoter ID:EPDNEW_M4295
Type:initiation region
Name:Ankrd34a_1
Description:Mus musculus ankyrin repeat domain 34A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38396,596,602 - 96,596,662EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3617846 AgrOrtholog
Ensembl Genes ENSMUSG00000049097 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000058943 ENTREZGENE
  ENSMUST00000058943.8 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro AN34A/B/C UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
KEGG Report mmu:545554 UniProtKB/TrEMBL
MGD MGI:3617846 ENTREZGENE
NCBI Gene 545554 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN 34A UniProtKB/TrEMBL
  PTHR24156 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
PhenoGen Ankrd34a PhenoGen
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
UniProt B2RW11 ENTREZGENE, UniProtKB/TrEMBL
  Q7TST1_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Ankrd34a  ankyrin repeat domain 34A  AW060394  expressed sequence AW060394  Data merged from RGD:1608529 737654 PROVISIONAL