Gm6195 (predicted pseudogene 6195) - Rat Genome Database

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Gene: Gm6195 (predicted pseudogene 6195) Mus musculus
Analyze
Symbol: Gm6195
Name: predicted pseudogene 6195
RGD ID: 1617105
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG620986; replication protein A 14 kDa subunit pseudogene; replication protein A 14 kDa subunit-like
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3919,872,333 - 9,872,778 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl19,872,422 - 9,872,778 (-)EnsemblGRCm39 Ensembl
GRCm3819,802,188 - 9,802,553 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl19,802,197 - 9,802,553 (-)EnsemblGRCm38mm10GRCm38
MGSCv3719,792,184 - 9,792,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3619,787,317 - 9,787,767 (-)NCBIMGSCv36mm8
Celera19,774,152 - 9,775,667 (-)NCBICelera
Cytogenetic Map1A2NCBI
cM Map12.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm6195
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENSMUST00000063059
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse

Markers in Region
RH126502  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3819,801,976 - 9,802,280UniSTSGRCm38
MGSCv3719,792,057 - 9,792,361UniSTSGRCm37
Celera19,774,062 - 9,774,336UniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map6A1UniSTS
cM Map17.5UniSTS
RH135990  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3819,802,199 - 9,802,395UniSTSGRCm38
GRCm3868,256,170 - 8,257,701UniSTSGRCm38
MGSCv3768,206,170 - 8,207,701UniSTSGRCm37
MGSCv3719,792,280 - 9,792,476UniSTSGRCm37
Celera68,397,871 - 8,399,395UniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map6A1UniSTS
cM Map17.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036155238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000063059
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl19,872,422 - 9,872,778 (-)Ensembl
GRCm38.p6 Ensembl19,802,197 - 9,802,553 (-)Ensembl
RefSeq Acc Id: XM_036155238   ⟹   XP_036011131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3919,872,333 - 9,872,778 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036011131 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_036011131   ⟸   XM_036155238


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000046334 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000063059 ENTREZGENE
MGD MGI:3647661 ENTREZGENE
NCBI Gene Gm6195 ENTREZGENE
PhenoGen Gm6195 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm6195  predicted pseudogene 6195  Gm6195  predicted gene 6195  Symbol and/or name change 5135510 APPROVED