Vmn2r18 (vomeronasal 2, receptor 18) - Rat Genome Database

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Gene: Vmn2r18 (vomeronasal 2, receptor 18) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn2r18
Name: vomeronasal 2, receptor 18
RGD ID: 1617045
MGI Page MGI
Description: Predicted to enable G protein-coupled receptor activity.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG632671; Vn2r18; vomeronasal receptor Vmn2r18
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395151,485,126 - 151,529,232 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5151,484,655 - 151,529,486 (-)EnsemblGRCm39 Ensembl
GRCm385151,561,661 - 151,586,924 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5151,561,190 - 151,606,021 (-)EnsemblGRCm38mm10GRCm38
MGSCv375152,364,236 - 152,389,499 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365151,830,040 - 151,874,086 (-)NCBIMGSCv36mm8
Celera5149,556,338 - 149,581,589 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map590.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:17382427   PMID:21873635  


Genomics

Variants

.
Variants in Vmn2r18
947 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:33
Interacting mature miRNAs:34
Transcripts:ENSMUST00000165928
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse
13504735Ifvrq7_minfluenza virus resistance QTL 7 (mouse)5139509801151658149Mouse
13504737Ifvrq5_minfluenza virus resistance QTL 5 (mouse)5139509801151658149Mouse
13504734Ifvrq4_minfluenza virus resistance QTL 4 (mouse)5139985755151658149Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001385214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000165928   ⟹   ENSMUSP00000127506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5151,485,126 - 151,510,389 (-)Ensembl
GRCm38.p6 Ensembl5151,561,661 - 151,586,924 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232853   ⟹   ENSMUSP00000156972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5151,484,655 - 151,529,486 (-)Ensembl
GRCm38.p6 Ensembl5151,561,190 - 151,606,021 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232905   ⟹   ENSMUSP00000156470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5151,484,655 - 151,529,486 (-)Ensembl
GRCm38.p6 Ensembl5151,561,190 - 151,606,021 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233599   ⟹   ENSMUSP00000156703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5151,484,655 - 151,529,486 (-)Ensembl
GRCm38.p6 Ensembl5151,561,190 - 151,606,021 (-)Ensembl
RefSeq Acc Id: ENSMUST00000233687   ⟹   ENSMUSP00000156670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5151,484,655 - 151,529,486 (-)Ensembl
GRCm38.p6 Ensembl5151,561,190 - 151,606,021 (-)Ensembl
RefSeq Acc Id: ENSMUST00000240714   ⟹   ENSMUSP00000159507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5151,484,655 - 151,529,486 (-)Ensembl
RefSeq Acc Id: NM_001385214   ⟹   NP_001372143
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395151,485,126 - 151,529,232 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001372143 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000156470.2
  ENSMUSP00000156670.2
  ENSMUSP00000156703.2
  ENSMUSP00000156972.2
  ENSMUSP00000159507
  ENSMUSP00000159507.1
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000127506   ⟸   ENSMUST00000165928
RefSeq Acc Id: ENSMUSP00000156703   ⟸   ENSMUST00000233599
RefSeq Acc Id: ENSMUSP00000156670   ⟸   ENSMUST00000233687
RefSeq Acc Id: ENSMUSP00000156470   ⟸   ENSMUST00000232905
RefSeq Acc Id: ENSMUSP00000156972   ⟸   ENSMUST00000232853
RefSeq Acc Id: NP_001372143   ⟸   NM_001385214
- Peptide Label: precursor
- UniProtKB: A0A8V5KY92 (UniProtKB/TrEMBL),   A0A3B2WB67 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000159507   ⟸   ENSMUST00000240714
Protein Domains
G-protein coupled receptors family 3 profile   Receptor ligand binding region

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A3B2WB67-F1-model_v2 AlphaFold A0A3B2WB67 1-871 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3645314 AgrOrtholog
Ensembl Genes ENSMUSG00000091794 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000232853.2 UniProtKB/TrEMBL
  ENSMUST00000232905.2 UniProtKB/TrEMBL
  ENSMUST00000233599.2 UniProtKB/TrEMBL
  ENSMUST00000233687.2 UniProtKB/TrEMBL
  ENSMUST00000240714 ENTREZGENE
  ENSMUST00000240714.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_vmron_rcpt_2 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
MGD MGI:3645314 ENTREZGENE
NCBI Gene 632671 ENTREZGENE
PANTHER PTHR24061 UniProtKB/TrEMBL
  VOMERONASAL 2, RECEPTOR 118-RELATED UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen Vmn2r18 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
  VOMERONASL2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt A0A3B2W3Z9_MOUSE UniProtKB/TrEMBL
  A0A3B2WB67 ENTREZGENE, UniProtKB/TrEMBL
  A0A3B2WCD9_MOUSE UniProtKB/TrEMBL
  A0A3B2WDC6_MOUSE UniProtKB/TrEMBL
  A0A8V5KY92 ENTREZGENE, UniProtKB/TrEMBL