Chl1 (cell adhesion molecule L1-like) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Chl1 (cell adhesion molecule L1-like) Mus musculus
Analyze
Symbol: Chl1
Name: cell adhesion molecule L1-like
RGD ID: 1616869
MGI Page MGI
Description: Exhibits protease binding activity. Involved in several processes, including exploration behavior; generation of neurons; and negative regulation of neuron apoptotic process. Localizes to apical part of cell and dendrite. Is expressed in nervous system and retina. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CHL1 (cell adhesion molecule L1 like); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: A530023M13Rik; AI465420; C; CALL; cell adhesion molecule with homology to L1CAM; chl1-like protein; close homolog of L1; expressed sequence AI465420; LIC; LICAM2; neural cell adhesion molecule L1-like protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396103,487,372 - 103,709,999 (+)NCBIGRCm39mm39
GRCm386103,510,584 - 103,733,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6103,510,586 - 103,750,211 (+)EnsemblGRCm38mm10GRCm38
MGSCv376103,460,870 - 103,683,029 (+)NCBIGRCm37mm9NCBIm37
MGSCv366103,476,776 - 103,695,601 (+)NCBImm8
Celera6105,381,168 - 105,594,453 (+)NCBICelera
Cytogenetic Map6E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8921253   PMID:10022583   PMID:10103075   PMID:10349636   PMID:10662501   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12391163   PMID:12466851   PMID:12477932   PMID:12605410  
PMID:12721290   PMID:12812975   PMID:12973829   PMID:14659567   PMID:14761956   PMID:15504324   PMID:15533325   PMID:15880726   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16623841  
PMID:16701205   PMID:17126027   PMID:17178404   PMID:17611275   PMID:17995939   PMID:18046458   PMID:18077678   PMID:18447583   PMID:18588951   PMID:19074023   PMID:19226508   PMID:19262122  
PMID:19303029   PMID:19672967   PMID:19819308   PMID:19877281   PMID:20151419   PMID:20576928   PMID:20711454   PMID:20933598   PMID:21677750   PMID:21873635   PMID:22008794   PMID:22097715  
PMID:22473292   PMID:22579729   PMID:22692213   PMID:22696295   PMID:22789544   PMID:22988240   PMID:23144456   PMID:23949217   PMID:24027281   PMID:24411736   PMID:24457600   PMID:24559674  
PMID:24952961   PMID:25007825   PMID:25355214   PMID:25775569   PMID:25826454   PMID:26285062   PMID:26299962   PMID:26527397   PMID:27178982   PMID:27346367   PMID:28583411   PMID:28630165  
PMID:28647594   PMID:28839197   PMID:29127326   PMID:29325091   PMID:29775614   PMID:29881335   PMID:31073041   PMID:31152445   PMID:31182634   PMID:31300520   PMID:32052901   PMID:32184019  
PMID:32640308  


Genomics

Comparative Map Data
Chl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396103,487,372 - 103,709,999 (+)NCBIGRCm39mm39
GRCm386103,510,584 - 103,733,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6103,510,586 - 103,750,211 (+)EnsemblGRCm38mm10GRCm38
MGSCv376103,460,870 - 103,683,029 (+)NCBIGRCm37mm9NCBIm37
MGSCv366103,476,776 - 103,695,601 (+)NCBImm8
Celera6105,381,168 - 105,594,453 (+)NCBICelera
Cytogenetic Map6E1NCBI
CHL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3196,763 - 409,417 (+)EnsemblGRCh38hg38GRCh38
GRCh383196,588 - 409,417 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373238,446 - 451,100 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh373238,279 - 451,100 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363213,650 - 426,098 (+)NCBINCBI36hg18NCBI36
Build 343213,649 - 426,098NCBI
Celera3184,048 - 396,327 (+)NCBI
Cytogenetic Map3p26.3NCBI
HuRef3183,830 - 396,668 (+)NCBIHuRef
CHM1_13181,916 - 401,107 (+)NCBICHM1_1
Chl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24136,291,504 - 136,505,830 (+)NCBI
Rnor_6.0 Ensembl470,252,366 - 70,330,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0470,269,414 - 70,331,313 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04134,915,211 - 135,121,060 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4125,052,335 - 125,267,922 (+)NCBICelera
Cytogenetic Map4q23NCBI
Chl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542112,763,287 - 12,958,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542112,763,432 - 12,957,852 (-)NCBIChiLan1.0ChiLan1.0
CHL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13262,725 - 469,720 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3262,717 - 469,715 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03146,514 - 354,334 (+)NCBIMhudiblu_PPA_v0panPan3
CHL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2016,792,960 - 16,984,613 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12016,789,697 - 17,065,861 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Chl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936577471,766 - 547,769 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1356,804,555 - 57,034,188 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11356,804,309 - 57,034,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21362,802,031 - 62,985,993 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHL1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12236,299,841 - 36,512,292 (+)NCBI
ChlSab1.1 Ensembl2236,300,474 - 36,512,417 (+)Ensembl
Chl1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477310,142,515 - 10,342,280 (+)NCBI

Position Markers
AI465420  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386103,732,716 - 103,732,858UniSTSGRCm38
MGSCv376103,682,710 - 103,682,852UniSTSGRCm37
Celera6105,594,134 - 105,594,276UniSTS
Cytogenetic Map6E1UniSTS
Whitehead/MRC_RH61054.69UniSTS
Chl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6E1UniSTS
Cytogenetic Map17E1.1UniSTS
cM Map647.97UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir10ammu-miR-10a-5pOncomiRDBexternal_infoNANA22634495

Predicted Target Of
Summary Value
Count of predictions:1148
Count of miRNA genes:578
Interacting mature miRNAs:734
Transcripts:ENSMUST00000066905
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ319655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ319656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ319657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X94310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000066905   ⟹   ENSMUSP00000063933
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6103,511,068 - 103,733,038 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203489
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6103,510,962 - 103,645,065 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203830   ⟹   ENSMUSP00000144758
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6103,511,174 - 103,729,469 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203912   ⟹   ENSMUSP00000145026
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6103,510,586 - 103,750,211 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204321   ⟹   ENSMUSP00000144725
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6103,511,330 - 103,664,748 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205098   ⟹   ENSMUSP00000144739
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6103,697,750 - 103,729,826 (+)Ensembl
RefSeq Acc Id: NM_007697   ⟹   NP_031723
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,837 - 103,709,996 (+)NCBI
GRCm386103,510,876 - 103,733,035 (+)NCBI
MGSCv376103,460,870 - 103,683,029 (+)RGD
Celera6105,381,168 - 105,594,453 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505467   ⟹   XP_006505530
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,372 - 103,709,999 (+)NCBI
GRCm386103,510,585 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505469   ⟹   XP_006505532
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,488,473 - 103,709,999 (+)NCBI
GRCm386103,511,585 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505470   ⟹   XP_006505533
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,520 - 103,709,999 (+)NCBI
GRCm386103,510,585 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505471   ⟹   XP_006505534
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,520 - 103,709,999 (+)NCBI
GRCm386103,511,409 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505472   ⟹   XP_006505535
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,520 - 103,709,999 (+)NCBI
GRCm386103,511,409 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505473   ⟹   XP_006505536
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,372 - 103,709,999 (+)NCBI
GRCm386103,510,584 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241198   ⟹   XP_011239500
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,520 - 103,709,999 (+)NCBI
GRCm386103,510,584 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321376   ⟹   XP_017176865
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,488,621 - 103,709,999 (+)NCBI
GRCm386103,511,587 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321377   ⟹   XP_017176866
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,372 - 103,709,999 (+)NCBI
GRCm386103,510,585 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255131   ⟹   XP_030110991
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,488,620 - 103,709,999 (+)NCBI
GRCm386103,511,585 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255132   ⟹   XP_030110992
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,520 - 103,709,999 (+)NCBI
GRCm386103,510,586 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255133   ⟹   XP_030110993
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,488,622 - 103,709,999 (+)NCBI
GRCm386103,511,587 - 103,733,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165791   ⟹   XP_036021684
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,520 - 103,709,999 (+)NCBI
RefSeq Acc Id: XM_036165792   ⟹   XP_036021685
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,489,312 - 103,709,999 (+)NCBI
RefSeq Acc Id: XM_036165793   ⟹   XP_036021686
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,487,520 - 103,709,999 (+)NCBI
RefSeq Acc Id: XM_036165794   ⟹   XP_036021687
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,489,312 - 103,709,999 (+)NCBI
RefSeq Acc Id: XM_036165795   ⟹   XP_036021688
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396103,488,619 - 103,709,999 (+)NCBI
Protein Sequences
Protein RefSeqs NP_031723 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505530 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505532 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505533 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505534 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505535 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505536 (Get FASTA)   NCBI Sequence Viewer  
  XP_011239500 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176865 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176866 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110991 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110992 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110993 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021684 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021685 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021686 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021687 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021688 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI31671 (Get FASTA)   NCBI Sequence Viewer  
  AAI31672 (Get FASTA)   NCBI Sequence Viewer  
  BAC30699 (Get FASTA)   NCBI Sequence Viewer  
  BAC33405 (Get FASTA)   NCBI Sequence Viewer  
  BAC35247 (Get FASTA)   NCBI Sequence Viewer  
  CAA63972 (Get FASTA)   NCBI Sequence Viewer  
  CAC88131 (Get FASTA)   NCBI Sequence Viewer  
  EDK99388 (Get FASTA)   NCBI Sequence Viewer  
  EDK99389 (Get FASTA)   NCBI Sequence Viewer  
  EDK99390 (Get FASTA)   NCBI Sequence Viewer  
  P70232 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_031723   ⟸   NM_007697
- Peptide Label: precursor
- UniProtKB: P70232 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505536   ⟸   XM_006505473
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006505530   ⟸   XM_006505467
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505533   ⟸   XM_006505470
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505534   ⟸   XM_006505471
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505535   ⟸   XM_006505472
- Peptide Label: isoform X2
- UniProtKB: P70232 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505532   ⟸   XM_006505469
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011239500   ⟸   XM_011241198
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017176866   ⟸   XM_017321377
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017176865   ⟸   XM_017321376
- Peptide Label: isoform X2
- UniProtKB: P70232 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030110992   ⟸   XM_030255132
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030110991   ⟸   XM_030255131
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030110993   ⟸   XM_030255133
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000063933   ⟸   ENSMUST00000066905
RefSeq Acc Id: ENSMUSP00000144725   ⟸   ENSMUST00000204321
RefSeq Acc Id: ENSMUSP00000145026   ⟸   ENSMUST00000203912
RefSeq Acc Id: ENSMUSP00000144758   ⟸   ENSMUST00000203830
RefSeq Acc Id: ENSMUSP00000144739   ⟸   ENSMUST00000205098
RefSeq Acc Id: XP_036021684   ⟸   XM_036165791
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036021686   ⟸   XM_036165793
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036021688   ⟸   XM_036165795
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036021685   ⟸   XM_036165792
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036021687   ⟸   XM_036165794
- Peptide Label: isoform X3
Promoters
RGD ID:6890556
Promoter ID:EPDNEW_M8729
Type:multiple initiation site
Name:Chl1_1
Description:Mus musculus cell adhesion molecule L1-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8730  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386103,511,368 - 103,511,428EPDNEW
RGD ID:6890558
Promoter ID:EPDNEW_M8730
Type:single initiation site
Name:Chl1_2
Description:Mus musculus cell adhesion molecule L1-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8729  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386103,522,661 - 103,522,721EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098266 AgrOrtholog
Ensembl Genes ENSMUSG00000030077 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000063933 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000144725 UniProtKB/TrEMBL
  ENSMUSP00000144739 UniProtKB/TrEMBL
  ENSMUSP00000144758 UniProtKB/Swiss-Prot
  ENSMUSP00000145026 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000066905 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000203830 UniProtKB/Swiss-Prot
  ENSMUST00000203912 UniProtKB/Swiss-Prot
  ENSMUST00000204321 UniProtKB/TrEMBL
  ENSMUST00000205098 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Basigin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Neurofascin/L1/NrCAM_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12661 UniProtKB/Swiss-Prot
MGD MGI:1098266 ENTREZGENE
NCBI Gene 12661 ENTREZGENE
PANTHER PTHR10075 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Bravo_FIGEY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-set UniProtKB/Swiss-Prot
  Ig_2 UniProtKB/Swiss-Prot
PhenoGen Chl1 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SUL1_MOUSE UniProtKB/TrEMBL
  A0A0N4SUM4_MOUSE UniProtKB/TrEMBL
  NCHL1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A2RRK1 UniProtKB/Swiss-Prot
  Q8BS24 UniProtKB/Swiss-Prot
  Q8C6W0 UniProtKB/Swiss-Prot
  Q8C823 UniProtKB/Swiss-Prot
  Q8VBY7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-28 Chl1  cell adhesion molecule L1-like  AI465420  expressed sequence AI465420  Data Merged 737654 PROVISIONAL
2016-02-02 Chl1  cell adhesion molecule L1-like    cell adhesion molecule with homology to L1CAM  Symbol and/or name change 5135510 APPROVED