Commd1 (COMM domain containing 1) - Rat Genome Database

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Gene: Commd1 (COMM domain containing 1) Mus musculus
Analyze
Symbol: Commd1
Name: COMM domain containing 1
RGD ID: 1616845
MGI Page MGI
Description: Predicted to enable several functions, including low-density lipoprotein particle receptor binding activity; phosphatidylinositol-3,4-bisphosphate binding activity; and phospholipid binding activity. Acts upstream of or within several processes, including cholesterol homeostasis; low-density lipoprotein particle clearance; and positive regulation of cellular protein localization. Located in endosome. Is expressed in several structures, including central nervous system; extraembryonic component; future brain; limb bud; and otocyst. Orthologous to human COMMD1 (copper metabolism domain containing 1); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI256843; COMM domain-containing protein 1; copper metabolism domain containing 1; Mur; Murr1; U2/Mu; U2af1-rs1 region 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391122,849,728 - 22,934,539 (-)NCBIGRCm39mm39
GRCm39 Ensembl1122,846,136 - 22,932,382 (-)Ensembl
GRCm381122,899,728 - 22,984,539 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1122,896,136 - 22,982,382 (-)EnsemblGRCm38mm10GRCm38
MGSCv371122,799,728 - 22,882,284 (-)NCBIGRCm37mm9NCBIm37
MGSCv361122,799,728 - 22,882,284 (-)NCBImm8
Celera1125,035,441 - 25,117,915 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:8889548   PMID:9001233   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11809725   PMID:11821379   PMID:12174196   PMID:12441649   PMID:12466851  
PMID:12477932   PMID:14610273   PMID:14673161   PMID:15489334   PMID:15741512   PMID:16141072   PMID:16141073   PMID:16305817   PMID:16573520   PMID:17371845   PMID:17786049   PMID:17910951  
PMID:18799693   PMID:19270718   PMID:19762339   PMID:20433422   PMID:20595380   PMID:21267068   PMID:21873635   PMID:22130675   PMID:22216203   PMID:24727021   PMID:25007851   PMID:25072958  
PMID:26965651   PMID:28723554   PMID:29545368   PMID:29763364   PMID:29875017   PMID:30157428   PMID:32015347   PMID:32200079   PMID:33262129  


Genomics

Comparative Map Data
Commd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391122,849,728 - 22,934,539 (-)NCBIGRCm39mm39
GRCm39 Ensembl1122,846,136 - 22,932,382 (-)Ensembl
GRCm381122,899,728 - 22,984,539 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1122,896,136 - 22,982,382 (-)EnsemblGRCm38mm10GRCm38
MGSCv371122,799,728 - 22,882,284 (-)NCBIGRCm37mm9NCBIm37
MGSCv361122,799,728 - 22,882,284 (-)NCBImm8
Celera1125,035,441 - 25,117,915 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.22NCBI
COMMD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl261,888,724 - 62,147,247 (+)EnsemblGRCh38hg38GRCh38
GRCh38261,888,391 - 62,136,066 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37262,115,526 - 62,368,321 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,986,307 - 62,216,709 (+)NCBINCBI36hg18NCBI36
Build 34262,044,453 - 62,274,855NCBI
Celera261,977,700 - 62,207,946 (+)NCBI
Cytogenetic Map2p15NCBI
HuRef261,871,871 - 62,101,672 (+)NCBIHuRef
CHM1_1262,062,726 - 62,293,462 (+)NCBICHM1_1
Commd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21496,880,463 - 96,984,494 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1496,880,463 - 96,984,501 (-)Ensembl
Rnor_6.014107,664,321 - 107,759,974 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14107,664,255 - 107,760,191 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014107,724,470 - 107,726,728 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.014107,804,733 - 107,835,993 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414103,571,472 - 103,667,692 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1495,868,544 - 95,965,715 (-)NCBICelera
Cytogenetic Map14q22NCBI
Commd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542421,927,079 - 22,050,371 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542421,962,837 - 22,067,745 (-)NCBIChiLan1.0ChiLan1.0
COMMD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A63,121,490 - 63,349,256 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A63,121,521 - 63,349,131 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A61,970,830 - 62,216,677 (+)NCBIMhudiblu_PPA_v0panPan3
COMMD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,886,281 - 62,059,610 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,886,281 - 62,059,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1061,775,492 - 61,947,762 (+)NCBI
ROS_Cfam_1.01062,894,268 - 63,067,243 (+)NCBI
UMICH_Zoey_3.11062,578,128 - 62,750,820 (+)NCBI
UNSW_CanFamBas_1.01062,882,129 - 63,053,837 (+)NCBI
UU_Cfam_GSD_1.01063,177,646 - 63,350,655 (+)NCBI
Dog Cytomap10q26NCBI
Commd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629221,150,249 - 21,324,134 (-)NCBI
SpeTri2.0NW_0049364917,247,160 - 7,421,039 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COMMD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl379,770,565 - 79,913,975 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1379,770,315 - 79,913,969 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2383,605,344 - 83,748,646 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COMMD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11444,839,460 - 45,068,764 (-)NCBI
ChlSab1.1 Ensembl1444,839,542 - 45,068,586 (-)Ensembl
Vero_WHO_p1.0NW_02366604566,766,475 - 66,997,250 (+)NCBI
Commd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476211,302,730 - 11,407,074 (-)NCBI

Position Markers
RH136105  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,956,441 - 22,956,641UniSTSGRCm38
MGSCv371122,856,441 - 22,856,641UniSTSGRCm37
Celera1125,092,132 - 25,092,332UniSTS
Cytogenetic Map11A3.2UniSTS
Zrsr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,973,357 - 22,974,040UniSTSGRCm38
MGSCv371122,872,328 - 22,872,563UniSTSGRCm37
MGSCv371122,872,517 - 22,873,176UniSTSGRCm37
Celera1125,108,989 - 25,109,672UniSTS
Cytogenetic Map11A3.2UniSTS
RH137461  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,973,276 - 22,973,468UniSTSGRCm38
MGSCv371122,873,276 - 22,873,468UniSTSGRCm37
Celera1125,108,908 - 25,109,100UniSTS
Cytogenetic Map11A3.2UniSTS
PMC303337P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,972,328 - 22,972,563UniSTSGRCm38
MGSCv371122,872,328 - 22,872,563UniSTSGRCm37
Celera1125,107,965 - 25,108,200UniSTS
Cytogenetic Map11A3.2UniSTS
PMC303337P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,973,892 - 22,974,115UniSTSGRCm38
MGSCv371122,873,892 - 22,874,115UniSTSGRCm37
Celera1125,109,524 - 25,109,747UniSTS
Cytogenetic Map11A3.2UniSTS
PMC303337P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,973,766 - 22,974,478UniSTSGRCm38
MGSCv371122,873,766 - 22,874,478UniSTSGRCm37
Celera1125,109,398 - 25,110,110UniSTS
Cytogenetic Map11A3.2UniSTS
PMC87265P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,972,036 - 22,972,328UniSTSGRCm38
MGSCv371122,872,036 - 22,872,328UniSTSGRCm37
Celera1125,107,673 - 25,107,965UniSTS
Cytogenetic Map11A3.2UniSTS
PMC87265P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,974,690 - 22,974,852UniSTSGRCm38
MGSCv371122,874,690 - 22,874,852UniSTSGRCm37
Celera1125,110,322 - 25,110,484UniSTS
Cytogenetic Map11A3.2UniSTS
Murr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.2UniSTS
cM Map1112.0UniSTS
Murr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.2UniSTS
cM Map1112.0UniSTS
U2af1-rs1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,972,040 - 22,972,328UniSTSGRCm38
MGSCv371122,872,040 - 22,872,328UniSTSGRCm37
Celera1125,107,677 - 25,107,965UniSTS
Cytogenetic Map11A3.2UniSTS
cM Map1112.0UniSTS
Zrsr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,972,328 - 22,972,563UniSTSGRCm38
MGSCv371122,872,328 - 22,872,563UniSTSGRCm37
Celera1125,107,965 - 25,108,200UniSTS
Cytogenetic Map11A3.2UniSTS
Zrsr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381122,972,517 - 22,973,176UniSTSGRCm38
MGSCv371122,872,517 - 22,873,176UniSTSGRCm37
Celera1125,108,154 - 25,108,813UniSTS
Cytogenetic Map11A3.2UniSTS
Commd1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123930487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11126026374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11126026374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11126026374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1127705234277232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11272035536721472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11330000034600000Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11330000044200000Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11470000046400000Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11530000035200000Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11693027733966219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11842212142422260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11895609742956218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11906178043061942Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111100123245001464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111100123245001464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111231863740060013Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111868778952687889Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111868778952687889Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111868778952687889Mouse
12801460Intim2_mintima modifier 2 (mouse)111868778952687889Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111939175053391888Mouse
14746971Manh70_mmandible shape 70 (mouse)112001506354015063Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2127257955272579Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2351
Count of miRNA genes:845
Interacting mature miRNAs:1125
Transcripts:ENSMUST00000057843, ENSMUST00000071068, ENSMUST00000093270, ENSMUST00000159081, ENSMUST00000160826, ENSMUST00000161944, ENSMUST00000162924
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB076722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB089806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB104816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB053099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU582903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX001008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY337798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX567872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D85430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D85431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D85432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000057843   ⟹   ENSMUSP00000053606
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1122,849,764 - 22,928,996 (-)Ensembl
GRCm38.p6 Ensembl1122,899,764 - 22,978,996 (-)Ensembl
RefSeq Acc Id: ENSMUST00000071068   ⟹   ENSMUSP00000065079
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1122,849,759 - 22,932,252 (-)Ensembl
GRCm38.p6 Ensembl1122,899,759 - 22,982,252 (-)Ensembl
RefSeq Acc Id: ENSMUST00000093270   ⟹   ENSMUSP00000090958
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1122,906,152 - 22,932,184 (-)Ensembl
GRCm38.p6 Ensembl1122,956,152 - 22,982,184 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159081   ⟹   ENSMUSP00000124719
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1122,846,136 - 22,932,382 (-)Ensembl
GRCm38.p6 Ensembl1122,896,136 - 22,982,382 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161944
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1122,849,835 - 22,906,947 (-)Ensembl
GRCm38.p6 Ensembl1122,899,835 - 22,956,947 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162924
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1122,850,023 - 22,922,859 (-)Ensembl
GRCm38.p6 Ensembl1122,900,023 - 22,972,859 (-)Ensembl
RefSeq Acc Id: NM_001361661   ⟹   NP_001348590
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391122,849,728 - 22,922,866 (-)NCBI
GRCm381122,899,728 - 22,972,866 (-)NCBI
Sequence:
RefSeq Acc Id: NM_144514   ⟹   NP_653097
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391122,849,728 - 22,932,284 (-)NCBI
GRCm381122,899,728 - 22,982,284 (-)NCBI
MGSCv371122,799,728 - 22,882,284 (-)RGD
Celera1125,035,441 - 25,117,915 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514563   ⟹   XP_006514626
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391122,849,741 - 22,934,539 (-)NCBI
GRCm381122,899,741 - 22,984,539 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314316   ⟹   XP_017169805
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391122,849,741 - 22,931,739 (-)NCBI
GRCm381122,899,732 - 22,981,754 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_653097   ⟸   NM_144514
- Peptide Label: isoform 1
- UniProtKB: Q8K4M5 (UniProtKB/Swiss-Prot),   A2RSF1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514626   ⟸   XM_006514563
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017169805   ⟸   XM_017314316
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001348590   ⟸   NM_001361661
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000124719   ⟸   ENSMUST00000159081
RefSeq Acc Id: ENSMUSP00000065079   ⟸   ENSMUST00000071068
RefSeq Acc Id: ENSMUSP00000090958   ⟸   ENSMUST00000093270
RefSeq Acc Id: ENSMUSP00000053606   ⟸   ENSMUST00000057843
Protein Domains
COMM   COMMD1_N

Promoters
RGD ID:6820653
Promoter ID:MM_KWN:6650
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000011742
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361122,878,176 - 22,878,676 (-)MPROMDB
RGD ID:6820654
Promoter ID:MM_KWN:6651
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_144514,   OTTMUST00000011743
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361122,881,999 - 22,882,499 (-)MPROMDB
RGD ID:8674092
Promoter ID:EPDNEW_M15077
Type:initiation region
Name:Commd1_1
Description:Mus musculus COMM domain containing 1 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381122,982,259 - 22,982,319EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109474 AgrOrtholog
Ensembl Genes ENSMUSG00000051355 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000053606 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000065079 UniProtKB/TrEMBL
  ENSMUSP00000090958 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000124719 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000057843 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000071068 UniProtKB/TrEMBL
  ENSMUST00000093270 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000159081 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro COMM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COMMD1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Murr1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17846 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109474 ENTREZGENE
NCBI Gene 17846 ENTREZGENE
PANTHER PTHR21199 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam COMM_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COMMD1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Commd1 PhenoGen
PROSITE COMM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2RSF1 ENTREZGENE, UniProtKB/TrEMBL
  COMD1_MOUSE UniProtKB/Swiss-Prot
  F7BZY0_MOUSE UniProtKB/TrEMBL
  G8JL54_MOUSE UniProtKB/TrEMBL
  Q3UGT3_MOUSE UniProtKB/TrEMBL
  Q8K4M5 ENTREZGENE
  Q8VI86_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3V012 UniProtKB/Swiss-Prot
  Q80WG2 UniProtKB/Swiss-Prot
  Q80Z41 UniProtKB/Swiss-Prot
  Q8BNL9 UniProtKB/Swiss-Prot
  Q8K2S9 UniProtKB/Swiss-Prot