Ss18l2 (SS18, nBAF chromatin remodeling complex subunit like 2) - Rat Genome Database
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Gene: Ss18l2 (SS18, nBAF chromatin remodeling complex subunit like 2) Mus musculus
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Symbol: Ss18l2
Name: SS18, nBAF chromatin remodeling complex subunit like 2
RGD ID: 1616819
MGI Page MGI
Description: Predicted to have transcription coactivator activity. Predicted to be involved in positive regulation of dendrite morphogenesis and positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Is expressed in bone; cartilage; rib; sensory organ; and submandibular gland primordium. Orthologous to human SS18L2 (SS18 like 2); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 1110020I04Rik; AI463209; Band 47B; Deb1; differentially expressed in B16F10 1; SS18-like protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,539,455 - 121,541,987 (+)NCBIGRCm39mm39
GRCm389121,710,389 - 121,712,921 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,710,329 - 121,713,388 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,619,507 - 121,622,039 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,559,087 - 121,561,619 (+)NCBImm8
Celera9122,183,606 - 122,186,086 (+)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2563351   PMID:8617797   PMID:8752144   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Ss18l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,539,455 - 121,541,987 (+)NCBIGRCm39mm39
GRCm389121,710,389 - 121,712,921 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,710,329 - 121,713,388 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,619,507 - 121,622,039 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,559,087 - 121,561,619 (+)NCBImm8
Celera9122,183,606 - 122,186,086 (+)NCBICelera
Cytogenetic Map9F4NCBI
SS18L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl342,581,840 - 42,596,934 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl342,581,840 - 42,595,114 (+)EnsemblGRCh38hg38GRCh38
GRCh38342,581,840 - 42,596,934 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37342,623,332 - 42,636,490 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,607,302 - 42,611,494 (+)NCBINCBI36hg18NCBI36
Build 34342,607,307 - 42,611,486NCBI
Celera342,572,703 - 42,576,900 (+)NCBI
Cytogenetic Map3p22.1NCBI
HuRef342,676,411 - 42,680,610 (+)NCBIHuRef
CHM1_1342,574,522 - 42,587,681 (+)NCBICHM1_1
Ss18l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08130,350,504 - 130,353,126 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,350,510 - 130,353,140 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,530,974 - 129,533,603 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8120,509,704 - 120,512,326 (+)NCBICelera
Cytogenetic Map8q32NCBI
Ss18l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,203,226 - 28,205,284 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,203,226 - 28,205,284 (-)NCBIChiLan1.0ChiLan1.0
SS18L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1343,552,858 - 43,565,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl343,552,858 - 43,565,681 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0342,487,389 - 42,500,908 (+)NCBIMhudiblu_PPA_v0panPan3
SS18L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2311,713,906 - 11,716,896 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12311,713,801 - 11,717,025 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ss18l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366952,517,840 - 2,521,504 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SS18L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,040,380 - 26,111,980 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,108,287 - 26,112,625 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,775,531 - 28,779,380 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SS18L2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,038,276 - 4,046,447 (+)NCBI
Ss18l2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473077,095,297 - 77,097,711 (-)NCBI

Position Markers
AI463209  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389121,712,716 - 121,712,828UniSTSGRCm38
MGSCv379121,621,834 - 121,621,946UniSTSGRCm37
Celera9122,185,881 - 122,185,993UniSTS
Cytogenetic Map9F4UniSTS
Whitehead/MRC_RH91220.95UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:60
Interacting mature miRNAs:61
Transcripts:ENSMUST00000035113
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000035113   ⟹   ENSMUSP00000035113
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,710,329 - 121,712,921 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213768
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,710,385 - 121,712,714 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214535
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,710,365 - 121,713,388 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215104   ⟹   ENSMUSP00000148939
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,710,400 - 121,712,754 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215833   ⟹   ENSMUSP00000149190
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,710,372 - 121,712,904 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215966   ⟹   ENSMUSP00000151078
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,710,346 - 121,712,828 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217579
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,710,467 - 121,712,820 (+)Ensembl
RefSeq Acc Id: NM_026794   ⟹   NP_081070
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,539,455 - 121,541,987 (+)NCBI
GRCm389121,710,389 - 121,712,921 (+)ENTREZGENE
MGSCv379121,619,507 - 121,622,039 (+)RGD
Celera9122,183,606 - 122,186,086 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_081070   ⟸   NM_026794
- UniProtKB: Q9D174 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000035113   ⟸   ENSMUST00000035113
RefSeq Acc Id: ENSMUSP00000151078   ⟸   ENSMUST00000215966
RefSeq Acc Id: ENSMUSP00000149190   ⟸   ENSMUST00000215833
RefSeq Acc Id: ENSMUSP00000148939   ⟸   ENSMUST00000215104

Promoters
RGD ID:6844404
Promoter ID:MM_KWN:59205
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:ENSMUST00000068330,   NM_026794
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369121,619,191 - 121,619,692 (+)MPROMDB
RGD ID:8671270
Promoter ID:EPDNEW_M13660
Type:initiation region
Name:Ss18l2_1
Description:Mus musculus SS18, nBAF chromatin remodeling complex subunitlike 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,710,399 - 121,710,459EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1349474 AgrOrtholog
Ensembl Genes ENSMUSG00000032526 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000035113 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148939 UniProtKB/TrEMBL
  ENSMUSP00000149190 UniProtKB/TrEMBL
  ENSMUSP00000151078 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035113 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000215104 UniProtKB/TrEMBL
  ENSMUST00000215833 UniProtKB/TrEMBL
  ENSMUST00000215966 UniProtKB/TrEMBL
InterPro SS18_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26901 UniProtKB/Swiss-Prot
MGD MGI:1349474 ENTREZGENE
NCBI Gene 26901 ENTREZGENE
Pfam SSXT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ss18l2 PhenoGen
UniGene Mm.24848 ENTREZGENE
UniProt A0A1L1SQ78_MOUSE UniProtKB/TrEMBL
  A0A1L1SQU5_MOUSE UniProtKB/TrEMBL
  A0A1L1SVA4_MOUSE UniProtKB/TrEMBL
  Q9D174 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-08 Ss18l2  SS18, nBAF chromatin remodeling complex subunit like 2  Deb1  differentially expressed in B16F10 1  Symbol and/or name change 5135510 APPROVED