Lmbr1 (limb region 1) - Rat Genome Database

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Gene: Lmbr1 (limb region 1) Mus musculus
Analyze
Symbol: Lmbr1
Name: limb region 1
RGD ID: 1616805
MGI Page MGI
Description: Predicted to enable transmembrane signaling receptor activity. Acts upstream of or within embryonic digit morphogenesis. Predicted to be located in membrane. Is expressed in several structures, including alimentary system; brain; genitourinary system; immune system; and liver and biliary system. Used to study acheiropody. Human ortholog(s) of this gene implicated in Laurin-Sandrow syndrome; acheiropody; and syndactyly type 4. Orthologous to human LMBR1 (limb development membrane protein 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 1110048D14Rik; AU017641; C79130; expressed sequence C79130; hypothetical protein LOC97236; limb region 1 protein; uncharacterized protein LOC97236
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39529,434,800 - 29,583,414 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl529,481,000 - 29,485,295 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl529,434,800 - 29,583,388 (-)EnsemblGRCm39 Ensembl
GRCm38529,229,802 - 29,378,421 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl529,229,802 - 29,378,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv37529,556,342 - 29,704,930 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36529,563,850 - 29,708,979 (-)NCBIMGSCv36mm8
Celera526,746,188 - 26,894,229 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map514.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:10945466   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11606546   PMID:12032320   PMID:12466851   PMID:12477932  
PMID:12491086   PMID:12520002   PMID:12837695   PMID:14610273   PMID:14727139   PMID:15489334   PMID:15677727   PMID:15782199   PMID:15841179   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:19097946   PMID:21267068   PMID:21873635   PMID:25252942   PMID:27867070   PMID:31511252   PMID:33863876  


Genomics

Comparative Map Data
Lmbr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39529,434,800 - 29,583,414 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl529,481,000 - 29,485,295 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl529,434,800 - 29,583,388 (-)EnsemblGRCm39 Ensembl
GRCm38529,229,802 - 29,378,421 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl529,229,802 - 29,378,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv37529,556,342 - 29,704,930 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36529,563,850 - 29,708,979 (-)NCBIMGSCv36mm8
Celera526,746,188 - 26,894,229 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map514.81NCBI
LMBR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387156,669,012 - 156,893,183 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7156,668,946 - 156,893,216 (-)EnsemblGRCh38hg38GRCh38
GRCh377156,461,706 - 156,685,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367156,166,331 - 156,378,663 (-)NCBINCBI36Build 36hg18NCBI36
Build 347155,975,109 - 156,185,317NCBI
Celera7150,900,771 - 151,113,109 (-)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7150,206,410 - 150,418,614 (-)NCBIHuRef
CHM1_17156,482,285 - 156,694,637 (-)NCBICHM1_1
T2T-CHM13v2.07157,856,727 - 158,080,951 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27155,702,965 - 155,915,305 (-)NCBI
Lmbr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr846,649,824 - 6,820,525 (+)NCBIGRCr8
mRatBN7.245,974,687 - 6,146,348 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl45,974,750 - 6,146,368 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx410,964,561 - 11,104,689 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.046,778,789 - 6,918,931 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.045,124,942 - 5,265,085 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.042,116,094 - 2,274,111 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl42,116,094 - 2,201,749 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.042,172,459 - 2,330,391 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.441,177,941 - 1,344,583 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera44,186,584 - 4,352,183 (-)NCBICelera
Cytogenetic Map4q11NCBI
Lmbr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554919,171,462 - 9,217,996 (-)NCBIChiLan1.0ChiLan1.0
LMBR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26193,126,963 - 193,338,373 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1745,138,039 - 45,348,637 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07148,301,263 - 148,512,407 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17159,995,236 - 160,151,025 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7159,999,389 - 160,152,858 (-)Ensemblpanpan1.1panPan2
LMBR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11619,295,235 - 19,442,390 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1619,296,149 - 19,442,369 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1619,926,402 - 20,073,017 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01621,024,102 - 21,171,034 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1621,025,016 - 21,171,045 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11619,393,417 - 19,539,921 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01619,975,284 - 20,122,102 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01620,027,644 - 20,174,745 (-)NCBIUU_Cfam_GSD_1.0
Lmbr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051181,986,679 - 2,145,004 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936797745,845 - 868,632 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936797745,851 - 873,388 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMBR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl181,795,497 - 1,934,947 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1181,795,462 - 1,934,951 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2181,941,562 - 1,997,710 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMBR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121124,819,580 - 125,032,058 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21124,819,887 - 124,981,008 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607221,034,422 - 21,261,773 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmbr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248001,494,192 - 1,648,978 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248001,494,183 - 1,648,978 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lmbr1
4373 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1792
Count of miRNA genes:543
Interacting mature miRNAs:640
Transcripts:ENSMUST00000055195, ENSMUST00000179191
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse

Markers in Region
AU017641  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38529,231,455 - 29,231,595UniSTSGRCm38
MGSCv37529,557,995 - 29,558,135UniSTSGRCm37
Celera526,747,841 - 26,747,981UniSTS
Cytogenetic Map5B1UniSTS
cM Map515.8UniSTS
Whitehead/MRC_RH5360.85UniSTS
BE197084  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38529,230,058 - 29,230,194UniSTSGRCm38
MGSCv37529,556,598 - 29,556,734UniSTSGRCm37
Celera526,746,444 - 26,746,580UniSTS
Cytogenetic Map5B1UniSTS
cM Map515.8UniSTS
Whitehead/MRC_RH5362.75UniSTS
D5Jcs62  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38529,366,546 - 29,366,696UniSTSGRCm38
MGSCv37529,693,086 - 29,693,236UniSTSGRCm37
Celera526,882,375 - 26,882,535UniSTS
Cytogenetic Map5B1UniSTS
cM Map5 UniSTS
Lmbr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5B1UniSTS
cM Map515.8UniSTS
RH126500  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38529,277,987 - 29,278,225UniSTSGRCm38
MGSCv37529,604,527 - 29,604,765UniSTSGRCm37
Celera526,794,416 - 26,794,654UniSTS
Cytogenetic Map5B1UniSTS
cM Map515.8UniSTS
Whitehead/MRC_RH5361.15UniSTS
UniSTS:225237  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38529,321,597 - 29,321,748UniSTSGRCm38
MGSCv37529,648,137 - 29,648,288UniSTSGRCm37
Celera526,837,880 - 26,838,031UniSTS
Cytogenetic Map5B1UniSTS
cM Map515.8UniSTS
UniSTS:225317  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38529,230,156 - 29,230,269UniSTSGRCm38
MGSCv37529,556,696 - 29,556,809UniSTSGRCm37
Celera526,746,542 - 26,746,655UniSTS
Cytogenetic Map5B1UniSTS
cM Map515.8UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_020295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB114903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC171500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC175116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF190665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF190666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB614787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG079619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM898643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  C79130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000055195   ⟹   ENSMUSP00000058405
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,434,800 - 29,583,382 (-)Ensembl
GRCm38.p6 Ensembl529,229,802 - 29,378,384 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179191   ⟹   ENSMUSP00000136160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,434,812 - 29,583,388 (-)Ensembl
GRCm38.p6 Ensembl529,229,814 - 29,378,390 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196321   ⟹   ENSMUSP00000143348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,437,117 - 29,583,300 (-)Ensembl
GRCm38.p6 Ensembl529,232,119 - 29,378,302 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198105   ⟹   ENSMUSP00000142755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,437,371 - 29,583,382 (-)Ensembl
GRCm38.p6 Ensembl529,232,373 - 29,378,384 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,463,075 - 29,566,088 (-)Ensembl
GRCm38.p6 Ensembl529,258,077 - 29,361,090 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,481,000 - 29,485,295 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200149   ⟹   ENSMUSP00000142987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,440,016 - 29,497,212 (-)Ensembl
GRCm38.p6 Ensembl529,235,018 - 29,292,214 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200564   ⟹   ENSMUSP00000143316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,437,839 - 29,583,328 (-)Ensembl
GRCm38.p6 Ensembl529,232,841 - 29,378,330 (-)Ensembl
RefSeq Acc Id: NM_020295   ⟹   NP_064691
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,434,800 - 29,583,388 (-)NCBI
GRCm38529,229,802 - 29,378,390 (-)NCBI
MGSCv37529,556,342 - 29,704,930 (-)RGD
Celera526,746,188 - 26,894,229 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006535764   ⟹   XP_006535827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,436,970 - 29,583,413 (-)NCBI
GRCm38529,229,802 - 29,378,421 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535765   ⟹   XP_006535828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,436,970 - 29,583,413 (-)NCBI
GRCm38529,229,802 - 29,378,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535767   ⟹   XP_006535830
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,436,970 - 29,583,413 (-)NCBI
GRCm38529,229,802 - 29,378,421 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535768   ⟹   XP_006535831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,436,970 - 29,583,413 (-)NCBI
GRCm38529,229,802 - 29,378,421 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535770   ⟹   XP_006535833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,436,970 - 29,583,387 (-)NCBI
GRCm38529,229,802 - 29,378,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535771   ⟹   XP_006535834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,480,997 - 29,583,412 (-)NCBI
GRCm38529,275,999 - 29,378,418 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535772   ⟹   XP_006535835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,486,966 - 29,583,412 (-)NCBI
GRCm38529,281,968 - 29,378,418 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249782   ⟹   XP_011248084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,436,970 - 29,583,413 (-)NCBI
GRCm38529,229,802 - 29,378,421 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254722   ⟹   XP_030110582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,436,970 - 29,583,387 (-)NCBI
GRCm38529,229,802 - 29,378,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165361   ⟹   XP_036021254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,455,338 - 29,583,411 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942544
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,437,371 - 29,583,411 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942545
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,476,760 - 29,583,414 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_064691 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535827 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535828 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535830 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535831 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535833 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535834 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535835 (Get FASTA)   NCBI Sequence Viewer  
  XP_011248084 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110582 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021254 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF91092 (Get FASTA)   NCBI Sequence Viewer  
  AAF91093 (Get FASTA)   NCBI Sequence Viewer  
  AAH16110 (Get FASTA)   NCBI Sequence Viewer  
  BAC25070 (Get FASTA)   NCBI Sequence Viewer  
  BAD07410 (Get FASTA)   NCBI Sequence Viewer  
  BAE28115 (Get FASTA)   NCBI Sequence Viewer  
  EDL37236 (Get FASTA)   NCBI Sequence Viewer  
  EDL37237 (Get FASTA)   NCBI Sequence Viewer  
  EDL37238 (Get FASTA)   NCBI Sequence Viewer  
  EDL37239 (Get FASTA)   NCBI Sequence Viewer  
  EDL37240 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000058405
  ENSMUSP00000058405.5
  ENSMUSP00000136160.2
  ENSMUSP00000142755
  ENSMUSP00000142755.2
  ENSMUSP00000142987.2
  ENSMUSP00000143316.2
  ENSMUSP00000143348
  ENSMUSP00000143348.2
GenBank Protein Q9JIT0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_064691   ⟸   NM_020295
- UniProtKB: Q91WC6 (UniProtKB/Swiss-Prot),   Q766D0 (UniProtKB/Swiss-Prot),   Q9JIS9 (UniProtKB/Swiss-Prot),   Q9JIT0 (UniProtKB/Swiss-Prot),   J3QM78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535833   ⟸   XM_006535770
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JFU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535830   ⟸   XM_006535767
- Peptide Label: isoform X4
- UniProtKB: J3QM78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535831   ⟸   XM_006535768
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JFX9 (UniProtKB/TrEMBL),   A0A0G2JFU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535828   ⟸   XM_006535765
- Peptide Label: isoform X2
- UniProtKB: J3QM78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535827   ⟸   XM_006535764
- Peptide Label: isoform X1
- UniProtKB: J3QM78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535834   ⟸   XM_006535771
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006535835   ⟸   XM_006535772
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_011248084   ⟸   XM_011249782
- Peptide Label: isoform X2
- UniProtKB: J3QM78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030110582   ⟸   XM_030254722
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JFU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000142755   ⟸   ENSMUST00000198105
RefSeq Acc Id: ENSMUSP00000136160   ⟸   ENSMUST00000179191
RefSeq Acc Id: ENSMUSP00000058405   ⟸   ENSMUST00000055195
RefSeq Acc Id: ENSMUSP00000143348   ⟸   ENSMUST00000196321
RefSeq Acc Id: ENSMUSP00000143316   ⟸   ENSMUST00000200564
RefSeq Acc Id: ENSMUSP00000142987   ⟸   ENSMUST00000200149
RefSeq Acc Id: XP_036021254   ⟸   XM_036165361
- Peptide Label: isoform X3
- UniProtKB: J3QM78 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JIT0-F1-model_v2 AlphaFold Q9JIT0 1-490 view protein structure

Promoters
RGD ID:6886254
Promoter ID:EPDNEW_M6578
Type:initiation region
Name:Lmbr1_1
Description:Mus musculus limb region 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38529,378,374 - 29,378,434EPDNEW
RGD ID:6836780
Promoter ID:MM_KWN:41715
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK019492_4632411P08RIK,   NM_020295,   UC008WUH.1,   UC008WUI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36529,704,691 - 29,705,197 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1861746 AgrOrtholog
Ensembl Genes ENSMUSG00000010721 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUSG00000105741 Ensembl
Ensembl Transcript ENSMUST00000055195 ENTREZGENE
  ENSMUST00000055195.11 UniProtKB/Swiss-Prot
  ENSMUST00000179191.6 UniProtKB/TrEMBL
  ENSMUST00000196321 ENTREZGENE
  ENSMUST00000196321.5 UniProtKB/TrEMBL
  ENSMUST00000198105 ENTREZGENE
  ENSMUST00000198105.5 UniProtKB/Swiss-Prot
  ENSMUST00000200149.2 UniProtKB/TrEMBL
  ENSMUST00000200564.5 UniProtKB/TrEMBL
InterPro LIMR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LMBR1-like_membr_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56873 UniProtKB/Swiss-Prot
MGD MGI:1861746 ENTREZGENE
NCBI Gene 56873 ENTREZGENE
PANTHER LIMB REGION 1 PROTEIN HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12625 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LMBR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lmbr1 PhenoGen
PRINTS LIPOCALINIMR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JF18_MOUSE UniProtKB/TrEMBL
  A0A0G2JFU9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JFX9 ENTREZGENE, UniProtKB/TrEMBL
  J3QM78 ENTREZGENE, UniProtKB/TrEMBL
  LMBR1_MOUSE UniProtKB/Swiss-Prot
  Q3UGU2_MOUSE UniProtKB/TrEMBL
  Q766D0 ENTREZGENE
  Q8BMZ2_MOUSE UniProtKB/TrEMBL
  Q91WC6 ENTREZGENE
  Q9JIS9 ENTREZGENE
  Q9JIT0 ENTREZGENE
UniProt Secondary Q766D0 UniProtKB/Swiss-Prot
  Q91WC6 UniProtKB/Swiss-Prot
  Q9JIS9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-19 Lmbr1  limb region 1  C79130  expressed sequence C79130  Data merged from RGD:1615783 737654 PROVISIONAL