Lima1 (LIM domain and actin binding 1) - Rat Genome Database

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Gene: Lima1 (LIM domain and actin binding 1) Mus musculus
Analyze
Symbol: Lima1
Name: LIM domain and actin binding 1
RGD ID: 1616795
MGI Page MGI
Description: Exhibits actin filament binding activity. Involved in several processes, including cholesterol homeostasis; intestinal cholesterol absorption; and ruffle organization. Localizes to actin cytoskeleton; brush border membrane; and ruffle. Is expressed in several structures, including alimentary system; brain; genitourinary system; immune system; and respiratory system. Orthologous to human LIMA1 (LIM domain and actin binding 1); PARTICIPATES IN E-cadherin signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1110021C24Rik; 3526402A12Rik; D15Ertd366e; E; epithelial protein lost in neoplasm; epithelial protein lost in neoplasm-a; epithelial protein lost in neoplasm-b; Eplin; LIM domain and actin-binding protein 1; mEPLIN
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,676,349 - 99,773,371 (-)NCBIGRCm39mm39
GRCm39 Ensembl1599,676,351 - 99,773,337 (-)Ensembl
GRCm381599,778,468 - 99,875,477 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,778,470 - 99,875,456 (-)EnsemblGRCm38mm10GRCm38
MGSCv371599,608,899 - 99,705,887 (-)NCBIGRCm37mm9NCBIm37
MGSCv361599,606,542 - 99,648,106 (-)NCBImm8
Celera15101,933,926 - 102,030,215 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
acrolein  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
Aroclor 1254  (EXP)
atrazine  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bortezomib  (ISO)
butan-1-ol  (ISO)
carbon nanotube  (EXP)
chloropicrin  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP,ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
fenamidone  (EXP)
ferric oxide  (EXP)
geldanamycin  (ISO)
glycidol  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
isobutanol  (ISO)
lipopolysaccharide  (EXP)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phytoestrogen  (ISO)
pirinixic acid  (EXP)
progesterone  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sulforaphane  (EXP,ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP,ISO)
thimerosal  (ISO)
topotecan  (ISO)
torcetrapib  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11179679   PMID:11217851   PMID:11950948   PMID:12466851   PMID:12477932  
PMID:12520002   PMID:12904583   PMID:14610273   PMID:15618518   PMID:15741177   PMID:15782199   PMID:15840001   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16778019   PMID:17110338  
PMID:17875928   PMID:17967808   PMID:18093941   PMID:18799693   PMID:20236507   PMID:21565611   PMID:21677750   PMID:21844208   PMID:21873635   PMID:22114352   PMID:23431145   PMID:23746204  
PMID:24194600   PMID:24302573   PMID:24457600   PMID:24614889   PMID:25609703   PMID:26496610   PMID:27626380   PMID:28106071   PMID:28671696   PMID:29254152   PMID:29880681   PMID:30196744  
PMID:30335684   PMID:30409884   PMID:30595499  


Genomics

Comparative Map Data
Lima1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,676,349 - 99,773,371 (-)NCBIGRCm39mm39
GRCm39 Ensembl1599,676,351 - 99,773,337 (-)Ensembl
GRCm381599,778,468 - 99,875,477 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,778,470 - 99,875,456 (-)EnsemblGRCm38mm10GRCm38
MGSCv371599,608,899 - 99,705,887 (-)NCBIGRCm37mm9NCBIm37
MGSCv361599,606,542 - 99,648,106 (-)NCBImm8
Celera15101,933,926 - 102,030,215 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
LIMA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1250,175,788 - 50,283,546 (-)EnsemblGRCh38hg38GRCh38
GRCh381250,175,780 - 50,283,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371250,569,563 - 50,677,303 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,855,838 - 48,963,539 (-)NCBINCBI36hg18NCBI36
Celera1249,365,319 - 49,473,110 (-)NCBI
Cytogenetic Map12q13.12NCBI
HuRef1247,602,746 - 47,710,458 (-)NCBIHuRef
CHM1_11250,535,584 - 50,643,310 (-)NCBICHM1_1
Lima1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27130,901,717 - 131,001,573 (-)NCBI
Rnor_6.0 Ensembl7141,428,063 - 141,528,397 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07141,428,113 - 141,528,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X115,932,904 - 116,035,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,519,353 - 138,617,856 (-)NCBIRGSC3.4rn4RGSC3.4
Celera7127,383,104 - 127,448,452 (-)NCBICelera
Cytogenetic Map7q36NCBI
Lima1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547730,073 - 827,783 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955547730,152 - 827,644 (-)NCBIChiLan1.0ChiLan1.0
LIMA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11239,370,497 - 39,476,142 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,399,611 - 39,476,142 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01238,473,223 - 38,580,511 (+)NCBIMhudiblu_PPA_v0panPan3
LIMA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,473,151 - 4,561,916 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,473,179 - 4,561,574 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,696,216 - 41,784,478 (-)NCBI
ROS_Cfam_1.0274,521,775 - 4,611,296 (+)NCBI
UMICH_Zoey_3.1274,487,057 - 4,576,041 (+)NCBI
UNSW_CanFamBas_1.0274,476,006 - 4,565,713 (+)NCBI
UU_Cfam_GSD_1.02742,091,081 - 42,179,519 (-)NCBI
Lima1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,312,989 - 65,351,458 (+)NCBI
SpeTri2.0NW_0049365127,812,856 - 7,851,859 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIMA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl516,074,436 - 16,177,104 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1516,074,436 - 16,177,122 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,487,730 - 16,492,647 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LIMA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,403,808 - 46,508,278 (-)NCBI
ChlSab1.1 Ensembl1146,403,826 - 46,508,249 (-)Ensembl
Lima1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248162,052,575 - 2,146,485 (+)NCBI

Position Markers
RH126358  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381599,818,330 - 99,818,573UniSTSGRCm38
MGSCv371599,648,761 - 99,649,004UniSTSGRCm37
Celera15101,973,177 - 101,973,420UniSTS
Cytogenetic Map15F1UniSTS
cM Map1560.4UniSTS
Whitehead/MRC_RH15887.39UniSTS
RH127071  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381599,778,536 - 99,778,736UniSTSGRCm38
MGSCv371599,608,967 - 99,609,167UniSTSGRCm37
Celera15101,933,994 - 101,934,194UniSTS
Cytogenetic Map15F1UniSTS
cM Map1560.4UniSTS
cM MapUN60.4UniSTS
Whitehead/MRC_RH15881.65UniSTS
Eplin-pending  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371599,650,043 - 99,650,498UniSTSGRCm37
Celera15101,974,459 - 101,974,914UniSTS
Cytogenetic Map15F1UniSTS
cM MapUN UniSTS
cM Map1560.4UniSTS
Eplin-pending  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381599,819,612 - 99,820,067UniSTSGRCm38
MGSCv371599,650,043 - 99,650,498UniSTSGRCm37
Celera15101,974,459 - 101,974,914UniSTS
Cytogenetic Map15F1UniSTS
cM MapUN UniSTS
Eplin-pending  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15F1UniSTS
cM MapUN UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800000102100000Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548500000101800000Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567386497101386646Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577629711104043685Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78716903102993272Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578716903102993272Mouse
14928306Manh79_mmandible shape 79 (mouse)1578949676104043685Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1579000000104043685Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579265530104043685Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined80011059104043685Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580415753104043685Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580987052104043685Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580987052104043685Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82717593104043685Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585988005104043685Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585988005104043685Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585988005104043685Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585993114104043685Mouse
1301764Chab4_mcholesterol absorption 4 (mouse)Not determined1586751919104043685Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92890759103517472Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597800000103100000Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597987052102988123Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1411
Count of miRNA genes:516
Interacting mature miRNAs:618
Transcripts:ENSMUST00000073691, ENSMUST00000109024, ENSMUST00000171450, ENSMUST00000172119
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001113545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC138177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF307844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF307845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW557567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB687891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY732313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ073082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ705508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000073691   ⟹   ENSMUSP00000073371
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1599,778,470 - 99,875,456 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109024   ⟹   ENSMUSP00000104652
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1599,778,470 - 99,820,143 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171450
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1599,841,228 - 99,875,416 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172119
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1599,781,239 - 99,783,973 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230033
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1599,796,418 - 99,802,133 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231121   ⟹   ENSMUSP00000155772
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1599,819,795 - 99,874,671 (-)Ensembl
RefSeq Acc Id: NM_001113545   ⟹   NP_001107017
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,676,349 - 99,773,337 (-)NCBI
GRCm381599,778,468 - 99,875,456 (-)ENTREZGENE
MGSCv371599,608,899 - 99,705,887 (-)RGD
Celera15101,933,926 - 102,030,215 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_023063   ⟹   NP_075550
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,676,349 - 99,718,030 (-)NCBI
GRCm381599,778,468 - 99,820,149 (-)NCBI
MGSCv371599,608,899 - 99,705,887 (-)RGD
Celera15101,933,926 - 102,030,215 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006521245   ⟹   XP_006521308
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,676,351 - 99,700,540 (-)NCBI
GRCm381599,778,470 - 99,806,486 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001781560
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,676,351 - 99,773,371 (-)NCBI
GRCm381599,778,470 - 99,875,477 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_075550   ⟸   NM_023063
- Peptide Label: isoform b
- UniProtKB: Q8C3R7 (UniProtKB/TrEMBL),   Q8CD09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001107017   ⟸   NM_001113545
- Peptide Label: isoform a
- UniProtKB: Q9ERG0 (UniProtKB/Swiss-Prot),   Q8CD09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006521308   ⟸   XM_006521245
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000155772   ⟸   ENSMUST00000231121
RefSeq Acc Id: ENSMUSP00000073371   ⟸   ENSMUST00000073691
RefSeq Acc Id: ENSMUSP00000104652   ⟸   ENSMUST00000109024
Protein Domains
LIM zinc-binding

Promoters
RGD ID:6826146
Promoter ID:MM_KWN:19706
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_023063
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361599,650,056 - 99,650,556 (-)MPROMDB
RGD ID:8685016
Promoter ID:EPDNEW_M20539
Type:initiation region
Name:Lima1_1
Description:Mus musculus LIM domain and actin binding 1 , transcript varianta, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20540  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381599,820,119 - 99,820,179EPDNEW
RGD ID:8685018
Promoter ID:EPDNEW_M20540
Type:initiation region
Name:Lima1_2
Description:Mus musculus LIM domain and actin binding 1 , transcript varianta, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20539  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381599,875,411 - 99,875,471EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920992 AgrOrtholog
Ensembl Genes ENSMUSG00000023022 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000073371 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104652 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000155772 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073691 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000109024 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000231121 UniProtKB/TrEMBL
InterPro EPLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:65970 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1920992 ENTREZGENE
NCBI Gene 65970 ENTREZGENE
PANTHER PTHR24206:SF57 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lima1 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8VI67_MOUSE UniProtKB/TrEMBL
  LIMA1_MOUSE UniProtKB/Swiss-Prot
  Q8BT15_MOUSE UniProtKB/TrEMBL
  Q8C3R7 ENTREZGENE, UniProtKB/TrEMBL
  Q8C7S2_MOUSE UniProtKB/TrEMBL
  Q8CD09 ENTREZGENE, UniProtKB/TrEMBL
  Q9ERG0 ENTREZGENE
UniProt Secondary Q8K2H0 UniProtKB/Swiss-Prot
  Q9ERG1 UniProtKB/Swiss-Prot