Glt6d1 (glycosyltransferase 6 domain containing 1) - Rat Genome Database

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Gene: Glt6d1 (glycosyltransferase 6 domain containing 1) Mus musculus
Analyze
Symbol: Glt6d1
Name: glycosyltransferase 6 domain containing 1
RGD ID: 1616753
MGI Page MGI
Description: Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be located in membrane. Predicted to be active in Golgi apparatus and vesicle. Orthologous to human GLT6D1 (glycosyltransferase 6 domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933411C14Rik; glycosyltransferase 6 domain-containing protein 1; GT6m7; MGC130548; novel glycosyltransferase family 6 protein; RP23-225D24.8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,673,474 - 25,705,908 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,683,871 - 25,705,860 (-)EnsemblGRCm39 Ensembl
GRCm38225,783,462 - 25,815,896 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,793,859 - 25,815,848 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,649,487 - 25,671,356 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,615,976 - 25,637,845 (-)NCBIMGSCv36mm8
Celera225,520,062 - 25,521,388 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.07NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IBA)
membrane  (IEA)
vesicle  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17298992   PMID:21873635   PMID:32561905  


Genomics

Comparative Map Data
Glt6d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,673,474 - 25,705,908 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,683,871 - 25,705,860 (-)EnsemblGRCm39 Ensembl
GRCm38225,783,462 - 25,815,896 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,793,859 - 25,815,848 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,649,487 - 25,671,356 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,615,976 - 25,637,845 (-)NCBIMGSCv36mm8
Celera225,520,062 - 25,521,388 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.07NCBI
GLT6D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389135,623,648 - 135,641,216 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9135,623,648 - 135,639,540 (-)EnsemblGRCh38hg38GRCh38
GRCh379138,515,494 - 138,531,386 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369137,655,323 - 137,671,207 (-)NCBINCBI36Build 36hg18NCBI36
Build 349135,741,446 - 135,757,331NCBI
Celera9109,033,335 - 109,049,219 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9107,977,356 - 107,993,247 (-)NCBIHuRef
CHM1_19138,663,974 - 138,679,885 (-)NCBICHM1_1
T2T-CHM13v2.09147,850,032 - 147,867,609 (-)NCBIT2T-CHM13v2.0
Glt6d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,026,023 - 29,037,010 (-)NCBIGRCr8
mRatBN7.238,627,793 - 8,638,537 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,627,911 - 8,636,335 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,682,073 - 11,690,512 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,265,284 - 20,273,723 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0318,520,605 - 18,529,044 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,255,645 - 3,266,276 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,255,638 - 3,266,260 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.038,617,882 - 8,628,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,979,926 - 3,988,404 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.133,980,113 - 3,995,936 (-)NCBI
Celera33,450,888 - 3,459,345 (-)NCBICelera
Cytogenetic Map3p13NCBI
Glt6d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,792,779 - 4,814,999 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,792,103 - 4,812,302 (+)NCBIChiLan1.0ChiLan1.0
GLT6D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,741,059 - 3,744,205 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan193,744,000 - 3,746,538 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09106,714,367 - 106,717,245 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19135,705,743 - 135,708,265 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9135,705,743 - 135,708,268 (-)Ensemblpanpan1.1panPan2
GLT6D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,638,849 - 49,649,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,639,072 - 49,649,399 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,891,252 - 48,902,129 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0950,518,005 - 50,527,238 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,517,902 - 50,526,405 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,297,953 - 49,307,173 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,592,455 - 49,604,170 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,640,783 - 49,650,006 (+)NCBIUU_Cfam_GSD_1.0
Glt6d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,422,126 - 201,430,974 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,945,250 - 1,952,652 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,945,250 - 1,952,652 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLT6D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21308,679,800 - 308,690,870 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GLT6D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1122,545,555 - 2,564,090 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl122,547,780 - 2,563,731 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660582,596,518 - 2,613,140 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Glt6d1
1006 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:186
Count of miRNA genes:164
Interacting mature miRNAs:176
Transcripts:ENSMUST00000038010, ENSMUST00000130316
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000038010   ⟹   ENSMUSP00000048642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,683,871 - 25,705,860 (-)Ensembl
GRCm38.p6 Ensembl225,793,859 - 25,815,848 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,685,226 - 25,705,843 (-)Ensembl
GRCm38.p6 Ensembl225,795,214 - 25,815,831 (-)Ensembl
RefSeq Acc Id: NM_001039095   ⟹   NP_001034184
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,683,874 - 25,705,864 (-)NCBI
GRCm38225,793,967 - 25,815,836 (-)NCBI
MGSCv37225,649,487 - 25,671,356 (-)RGD
Celera225,520,062 - 25,521,388 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001418732   ⟹   NP_001405661
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,683,874 - 25,705,864 (-)NCBI
RefSeq Acc Id: NR_184806
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,673,480 - 25,705,864 (-)NCBI
RefSeq Acc Id: NR_184807
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,683,874 - 25,705,864 (-)NCBI
RefSeq Acc Id: NR_184808
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,683,874 - 25,705,864 (-)NCBI
RefSeq Acc Id: XR_003953720
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,673,474 - 25,705,908 (-)NCBI
GRCm38225,783,462 - 25,815,896 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001034184 (Get FASTA)   NCBI Sequence Viewer  
  NP_001405661 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI11824 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000048642
  ENSMUSP00000048642.5
GenBank Protein Q2NKH9 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001034184   ⟸   NM_001039095
- Peptide Label: isoform 1 precursor
- UniProtKB: Q2NKH9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000048642   ⟸   ENSMUST00000038010
RefSeq Acc Id: NP_001405661   ⟸   NM_001418732
- Peptide Label: isoform 2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2NKH9-F1-model_v2 AlphaFold Q2NKH9 1-311 view protein structure

Promoters
RGD ID:6876654
Promoter ID:EPDNEW_M1778
Type:multiple initiation site
Name:Glt6d1_1
Description:Mus musculus glycosyltransferase 6 domain containing 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38225,815,852 - 25,815,912EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918353 AgrOrtholog
Ensembl Genes ENSMUSG00000036401 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000038010 ENTREZGENE
  ENSMUST00000038010.5 UniProtKB/Swiss-Prot
InterPro Glyco_trans_6 UniProtKB/Swiss-Prot
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot
KEGG Report mmu:71103 UniProtKB/Swiss-Prot
MGD MGI:1918353 ENTREZGENE
NCBI Gene 71103 ENTREZGENE
PANTHER GLYCOSYLTRANSFERASE 6 DOMAIN-CONTAINING PROTEIN 1-RELATED UniProtKB/Swiss-Prot
  PTHR10462 UniProtKB/Swiss-Prot
Pfam Glyco_transf_6 UniProtKB/Swiss-Prot
PhenoGen Glt6d1 PhenoGen
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot
UniProt GL6D1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE