Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | acute myeloid leukemia | | ISO | GAS2L1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:17330099 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | acute myeloid leukemia | | ISO | GAS2L1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:17330099 | |
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# | Reference Title | Reference Citation |
1. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:1602141 | PMID:8889548 | PMID:10349636 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12466851 | PMID:12477932 | PMID:12584248 | PMID:15489334 | PMID:15782199 |
PMID:16141072 | PMID:16141073 | PMID:18799693 | PMID:19375645 | PMID:21267068 | PMID:21677750 | PMID:21873635 | PMID:24194600 | PMID:26564797 | PMID:27626380 |
Gas2l1 (Mus musculus - house mouse) |
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GAS2L1 (Homo sapiens - human) |
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Gas2l1 (Rattus norvegicus - Norway rat) |
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Gas2l1 (Chinchilla lanigera - long-tailed chinchilla) |
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GAS2L1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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GAS2L1 (Canis lupus familiaris - dog) |
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Gas2l1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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GAS2L1 (Sus scrofa - pig) |
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GAS2L1 (Chlorocebus sabaeus - green monkey) |
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Gas2l1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Gas2l1
325 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
AI852688 |
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RH17231 |
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RefSeq Transcripts | NM_001190406 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001190408 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_030228 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_144560 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017314850 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030246437 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC005528 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AF508323 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF508324 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK019661 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK052229 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK082864 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK178862 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK180368 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK186517 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK201552 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK208067 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK210874 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK214395 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK218035 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL645522 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AW061138 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC031785 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC098192 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY231632 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466574 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CJ170523 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
M89786 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000037146 ⟹ ENSMUSP00000043709 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000056649 ⟹ ENSMUSP00000050275 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000109895 ⟹ ENSMUSP00000105521 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000122886 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000151936 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000152257 ⟹ ENSMUSP00000121993 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000156196 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001190406 ⟹ NP_001177335 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001190408 ⟹ NP_001177337 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_030228 ⟹ NP_084504 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_144560 ⟹ NP_653146 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017314850 ⟹ XP_017170339 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030246437 ⟹ XP_030102297 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001177335 | (Get FASTA) | NCBI Sequence Viewer |
NP_001177337 | (Get FASTA) | NCBI Sequence Viewer | |
NP_084504 | (Get FASTA) | NCBI Sequence Viewer | |
NP_653146 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017170339 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030102297 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH31785 | (Get FASTA) | NCBI Sequence Viewer |
AAM34262 | (Get FASTA) | NCBI Sequence Viewer | |
AAM34263 | (Get FASTA) | NCBI Sequence Viewer | |
BAB31826 | (Get FASTA) | NCBI Sequence Viewer | |
EDL40511 | (Get FASTA) | NCBI Sequence Viewer | |
EDL40512 | (Get FASTA) | NCBI Sequence Viewer | |
EDL40513 | (Get FASTA) | NCBI Sequence Viewer | |
EDL40514 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000043709 | ||
ENSMUSP00000043709.4 | |||
ENSMUSP00000050275 | |||
ENSMUSP00000050275.7 | |||
ENSMUSP00000105521 | |||
ENSMUSP00000105521.2 | |||
ENSMUSP00000121993.2 | |||
GenBank Protein | Q8JZP9 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_653146 ⟸ NM_144560 |
- Peptide Label: | isoform beta |
- UniProtKB: | Q5SVG0 (UniProtKB/Swiss-Prot), Q8K573 (UniProtKB/Swiss-Prot), Q8JZP9 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_084504 ⟸ NM_030228 |
- Peptide Label: | isoform alpha |
- UniProtKB: | Q9D2H3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001177335 ⟸ NM_001190406 |
- Peptide Label: | isoform gamma |
- UniProtKB: | Q9D2H3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001177337 ⟸ NM_001190408 |
- Peptide Label: | isoform beta |
- UniProtKB: | Q5SVG0 (UniProtKB/Swiss-Prot), Q8K573 (UniProtKB/Swiss-Prot), Q8JZP9 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_017170339 ⟸ XM_017314850 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | XP_030102297 ⟸ XM_030246437 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | ENSMUSP00000121993 ⟸ ENSMUST00000152257 |
RefSeq Acc Id: | ENSMUSP00000043709 ⟸ ENSMUST00000037146 |
RefSeq Acc Id: | ENSMUSP00000050275 ⟸ ENSMUST00000056649 |
RefSeq Acc Id: | ENSMUSP00000105521 ⟸ ENSMUST00000109895 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q8JZP9-F1-model_v2 | AlphaFold | Q8JZP9 | 1-678 | view protein structure |
RGD ID: | 6820919 | ||||||||
Promoter ID: | MM_KWN:6271 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Lung, MEF_B4 | ||||||||
Transcripts: | OTTMUST00000011313, OTTMUST00000011316, OTTMUST00000011319, UC007HVQ.1, UC007HVR.1, UC007HVT.1, UC007HVV.1 | ||||||||
Position: |
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RGD ID: | 8673824 | ||||||||
Promoter ID: | EPDNEW_M14943 | ||||||||
Type: | initiation region | ||||||||
Name: | Gas2l1_1 | ||||||||
Description: | Mus musculus growth arrest-specific 2 like 1 , transcript variantdelta, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1926176 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000034201 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000037146 | ENTREZGENE |
ENSMUST00000037146.10 | UniProtKB/TrEMBL | |
ENSMUST00000056649 | ENTREZGENE | |
ENSMUST00000056649.13 | UniProtKB/Swiss-Prot | |
ENSMUST00000109895 | ENTREZGENE | |
ENSMUST00000109895.2 | UniProtKB/Swiss-Prot | |
ENSMUST00000122886 | ENTREZGENE | |
ENSMUST00000152257.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.418.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.30.920.20 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | CH-domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
CH_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GAR_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GAR_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:78926 | UniProtKB/Swiss-Prot |
MGD | MGI:1926176 | ENTREZGENE |
NCBI Gene | 78926 | ENTREZGENE |
PANTHER | PTHR46756:SF16 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
TRANSGELIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | GAS2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PF00307 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Gas2l1 | PhenoGen |
PROSITE | GAR | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PS50021 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | GAS2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SM00033 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF143575 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF47576 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | GA2L1_MOUSE | UniProtKB/Swiss-Prot |
Q5SVG0 | ENTREZGENE | |
Q8JZP9 | ENTREZGENE | |
Q8K573 | ENTREZGENE | |
Q9D2H3 | ENTREZGENE, UniProtKB/TrEMBL | |
Z4YN41_MOUSE | UniProtKB/TrEMBL | |
UniProt Secondary | Q5SVG0 | UniProtKB/Swiss-Prot |
Q8K573 | UniProtKB/Swiss-Prot |